Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36933 * 120.00373 * 2 1 4 4 H 1.08004 * 120.00380 * 202.35826 * 3 2 1 5 5 C 1.38814 * 119.99595 * 22.36561 * 3 2 1 6 6 N 1.31623 * 120.00149 * 11.77620 * 5 3 2 7 7 Si 1.86803 * 119.99761 * 191.77550 * 5 3 2 8 8 H 1.48502 * 109.46936 * 90.00314 * 7 5 3 9 9 H 1.48508 * 109.47103 * 209.99726 * 7 5 3 10 10 H 1.48493 * 109.47528 * 329.99895 * 7 5 3 11 11 C 1.46502 * 119.99857 * 180.02562 * 2 1 3 12 12 C 1.50708 * 109.46815 * 269.99499 * 11 2 1 13 13 C 1.38228 * 120.00678 * 260.23720 * 12 11 2 14 14 C 1.38220 * 120.01196 * 180.25283 * 13 12 11 15 15 C 1.38265 * 120.02581 * 359.76871 * 14 13 12 16 16 C 1.38187 * 120.01540 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.01107 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.46741 * 359.97438 * 17 16 15 19 19 F 1.39895 * 109.47204 * 119.97488 * 17 16 15 20 20 F 1.39897 * 109.46922 * 239.98219 * 17 16 15 21 21 C 1.38329 * 120.00434 * 79.99609 * 12 11 2 22 22 Cl 1.73604 * 120.01673 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.47288 * 272.76897 * 1 2 3 24 24 H 1.09001 * 109.47282 * 32.76249 * 1 2 3 25 25 H 1.09000 * 109.47670 * 152.76359 * 1 2 3 26 26 H 0.97001 * 119.99499 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47494 * 149.99795 * 11 2 1 28 28 H 1.09003 * 109.47363 * 29.99196 * 11 2 1 29 29 H 1.08003 * 119.99747 * 359.97438 * 13 12 11 30 30 H 1.08008 * 119.98657 * 179.74239 * 14 13 12 31 31 H 1.08009 * 119.99245 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3558 5 6 1.5339 2.3428 0.4575 6 7 0.3886 2.2681 1.1018 7 14 2.3308 4.0057 0.1586 8 1 1.8521 4.5589 -1.1337 9 1 1.9671 4.9338 1.2594 10 1 3.8064 3.8464 0.1127 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7043 1.4202 13 6 3.6812 -1.4800 2.0043 14 6 3.9134 -1.8841 3.3055 15 6 2.9116 -2.5087 4.0252 16 6 1.6773 -2.7287 3.4442 17 6 0.5852 -3.4088 4.2289 18 9 1.0560 -3.7211 5.5088 19 9 -0.5164 -2.5529 4.3332 20 9 0.2025 -4.5839 3.5733 21 6 1.4442 -2.3242 2.1415 22 17 -0.1059 -2.6012 1.4105 23 1 -0.3634 0.0496 1.0264 24 1 -0.3634 0.8642 -0.5561 25 1 -0.3634 -0.9137 -0.4703 26 1 -0.0418 3.0766 1.4211 27 1 3.1498 -1.1383 -0.5143 28 1 1.6083 -2.0283 -0.5146 29 1 4.4644 -0.9929 1.4423 30 1 4.8780 -1.7124 3.7601 31 1 3.0938 -2.8246 5.0419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205050279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = -103.998325 kcal Electronic energy + Delta-G solvation = -21911.039205 eV Core-core repulsion = 17997.415201 eV Total energy + Delta-G solvation = -3913.624004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93175 -47.48777 -47.33983 -39.25752 -36.11430 -35.63709 -32.43858 -31.30874 -30.18643 -26.28898 -25.79647 -25.66153 -22.31461 -21.86687 -20.47896 -18.25020 -18.20015 -17.87192 -16.79155 -16.22475 -15.27455 -14.94190 -14.44410 -14.28764 -14.23848 -13.90724 -13.81578 -13.67069 -13.53680 -13.44711 -13.18809 -12.63170 -12.45386 -12.03278 -11.70124 -11.39648 -11.15520 -10.98297 -10.90031 -10.78167 -10.44384 -10.18994 -10.01069 -9.82027 -8.84183 -8.62375 -8.34566 -6.87879 -5.82166 -3.26093 1.14911 1.46412 2.40961 2.89709 3.32548 3.38447 3.40394 3.71336 3.92613 4.23125 4.42711 4.64987 5.00737 5.15419 5.36644 5.45919 5.54598 5.64242 5.65613 6.02746 6.10551 6.26477 6.45157 6.54182 6.80315 6.83345 6.97449 7.37462 7.68772 7.79127 8.28792 9.12532 9.74093 10.23450 11.21444 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.005930 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.284494 B = 4720.396996 C = 5005.824045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.583 5.583 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.006 3.994 6 N -0.896 5.896 7 Si 0.907 3.093 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.176 3.824 12 C -0.074 4.074 13 C -0.068 4.068 14 C -0.120 4.120 15 C -0.088 4.088 16 C -0.184 4.184 17 C 0.510 3.490 18 F -0.182 7.182 19 F -0.170 7.170 20 F -0.176 7.176 21 C 0.018 3.982 22 Cl -0.050 7.050 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.002 0.998 26 H 0.255 0.745 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -11.329 4.210 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.302 5.302 3 C -0.388 4.388 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.539 5.539 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.048 3.952 12 C -0.080 4.080 13 C -0.088 4.088 14 C -0.138 4.138 15 C -0.107 4.107 16 C -0.186 4.186 17 C 0.456 3.544 18 F -0.163 7.163 19 F -0.151 7.151 20 F -0.157 7.157 21 C -0.010 4.010 22 Cl -0.021 7.021 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.521 -11.176 4.171 12.438 hybrid contribution -0.015 0.984 0.343 1.042 sum 3.506 -10.192 4.514 11.685 Atomic orbital electron populations 1.20990 0.81752 0.95931 0.99544 1.44191 1.02256 0.99974 1.83766 1.19267 0.98511 0.84954 1.36105 0.91045 1.25114 0.97664 0.98749 0.97875 1.70093 1.17733 1.27389 1.38728 0.86225 0.78820 0.83841 0.77451 1.21311 1.21673 1.20389 1.20119 0.97351 0.89334 0.88368 1.21240 0.91253 0.93199 1.02265 1.21200 0.96418 0.96421 0.94728 1.21129 0.99085 0.98935 0.94682 1.20735 0.91145 0.98754 1.00050 1.19737 0.95620 1.08583 0.94676 1.18209 0.81965 0.76962 0.77291 1.93129 1.88401 1.93356 1.41421 1.93251 1.55718 1.70099 1.96018 1.93203 1.92109 1.49502 1.80898 1.20406 0.88620 1.00106 0.91908 1.98379 1.26495 1.94482 1.82703 0.94898 0.93608 0.97957 0.93482 0.92051 0.92446 0.84777 0.85116 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 7.34 59.84 0.44 4.40 16 2 N -0.58 -14.10 2.91 -182.50 -0.53 -14.63 16 3 C -0.26 -6.78 9.67 -15.06 -0.15 -6.92 16 4 H 0.07 1.80 7.85 -52.48 -0.41 1.38 16 5 C 0.01 0.16 5.11 -17.43 -0.09 0.07 16 6 N -0.90 -25.69 10.62 55.49 0.59 -25.10 16 7 Si 0.91 21.25 29.57 -169.99 -5.03 16.22 16 8 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.18 3.46 5.40 -5.19 -0.03 3.43 16 12 C -0.07 -1.39 5.47 -104.59 -0.57 -1.96 16 13 C -0.07 -1.11 9.67 -39.59 -0.38 -1.49 16 14 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 15 C -0.09 -1.29 9.43 -39.59 -0.37 -1.66 16 16 C -0.18 -3.12 5.37 -104.59 -0.56 -3.68 16 17 C 0.51 8.27 2.86 36.01 0.10 8.37 16 18 F -0.18 -2.66 15.97 2.25 0.04 -2.62 16 19 F -0.17 -3.03 16.40 2.25 0.04 -2.99 16 20 F -0.18 -2.78 16.39 2.25 0.04 -2.75 16 21 C 0.02 0.33 6.25 -39.50 -0.25 0.08 16 22 Cl -0.05 -0.93 21.75 -51.86 -1.13 -2.06 16 23 H 0.03 0.87 6.98 -51.93 -0.36 0.51 16 24 H 0.05 1.21 7.10 -51.93 -0.37 0.84 16 25 H 0.00 0.04 6.75 -51.93 -0.35 -0.31 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 28 H 0.06 1.06 7.09 -51.93 -0.37 0.69 16 29 H 0.13 1.96 8.04 -52.48 -0.42 1.53 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.14 1.64 7.16 -52.48 -0.38 1.26 16 LS Contribution 286.76 15.07 4.32 4.32 Total: -1.00 -28.90 286.76 -6.55 -35.44 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -2.63 Total: -4.39 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.25 Total: -1.45 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.06 Total: -39.73 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.11 Total: -8.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.13 Total: -2.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.90 -6.55 -35.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205050279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.557 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds