Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36933 * 120.00373 * 2 1 4 4 H 1.08004 * 120.00380 * 202.35826 * 3 2 1 5 5 C 1.38814 * 119.99595 * 22.36561 * 3 2 1 6 6 N 1.31623 * 120.00149 * 11.77620 * 5 3 2 7 7 Si 1.86803 * 119.99761 * 191.77550 * 5 3 2 8 8 H 1.48502 * 109.46936 * 90.00314 * 7 5 3 9 9 H 1.48508 * 109.47103 * 209.99726 * 7 5 3 10 10 H 1.48493 * 109.47528 * 329.99895 * 7 5 3 11 11 C 1.46502 * 119.99857 * 180.02562 * 2 1 3 12 12 C 1.50708 * 109.46815 * 269.99499 * 11 2 1 13 13 C 1.38228 * 120.00678 * 260.23720 * 12 11 2 14 14 C 1.38220 * 120.01196 * 180.25283 * 13 12 11 15 15 C 1.38265 * 120.02581 * 359.76871 * 14 13 12 16 16 C 1.38187 * 120.01540 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.01107 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.46741 * 359.97438 * 17 16 15 19 19 F 1.39895 * 109.47204 * 119.97488 * 17 16 15 20 20 F 1.39897 * 109.46922 * 239.98219 * 17 16 15 21 21 C 1.38329 * 120.00434 * 79.99609 * 12 11 2 22 22 Cl 1.73604 * 120.01673 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.47288 * 272.76897 * 1 2 3 24 24 H 1.09001 * 109.47282 * 32.76249 * 1 2 3 25 25 H 1.09000 * 109.47670 * 152.76359 * 1 2 3 26 26 H 0.97001 * 119.99499 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47494 * 149.99795 * 11 2 1 28 28 H 1.09003 * 109.47363 * 29.99196 * 11 2 1 29 29 H 1.08003 * 119.99747 * 359.97438 * 13 12 11 30 30 H 1.08008 * 119.98657 * 179.74239 * 14 13 12 31 31 H 1.08009 * 119.99245 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2210 -0.3558 5 6 1.5339 2.3428 0.4575 6 7 0.3886 2.2681 1.1018 7 14 2.3308 4.0057 0.1586 8 1 1.8521 4.5589 -1.1337 9 1 1.9671 4.9338 1.2594 10 1 3.8064 3.8464 0.1127 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7043 1.4202 13 6 3.6812 -1.4800 2.0043 14 6 3.9134 -1.8841 3.3055 15 6 2.9116 -2.5087 4.0252 16 6 1.6773 -2.7287 3.4442 17 6 0.5852 -3.4088 4.2289 18 9 1.0560 -3.7211 5.5088 19 9 -0.5164 -2.5529 4.3332 20 9 0.2025 -4.5839 3.5733 21 6 1.4442 -2.3242 2.1415 22 17 -0.1059 -2.6012 1.4105 23 1 -0.3634 0.0496 1.0264 24 1 -0.3634 0.8642 -0.5561 25 1 -0.3634 -0.9137 -0.4703 26 1 -0.0418 3.0766 1.4211 27 1 3.1498 -1.1383 -0.5143 28 1 1.6083 -2.0283 -0.5146 29 1 4.4644 -0.9929 1.4423 30 1 4.8780 -1.7124 3.7601 31 1 3.0938 -2.8246 5.0419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205050279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -118.766325 kcal Electronic energy + Delta-G solvation = -21911.679594 eV Core-core repulsion = 17997.415201 eV Total energy + Delta-G solvation = -3914.264393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.20879 -48.73228 -48.65896 -40.57059 -37.53584 -37.36786 -34.06225 -32.73065 -31.76684 -28.08052 -27.48485 -27.03243 -23.88698 -23.23727 -22.00127 -19.53716 -19.48338 -19.18972 -18.68180 -17.50098 -16.91013 -16.53002 -15.82271 -15.60231 -15.52986 -15.46919 -15.15120 -15.10291 -14.97976 -14.83343 -14.72359 -14.10003 -13.90029 -13.54711 -13.24813 -13.00741 -12.75875 -12.66090 -12.45585 -12.29669 -12.15807 -11.96010 -11.85607 -11.46067 -10.61093 -10.13517 -9.69531 -8.80958 -7.80951 -5.28832 -0.13476 0.19197 1.03703 1.48422 1.50197 1.58004 1.61674 2.41295 2.55573 2.65199 2.96655 3.34002 3.36657 3.78763 3.84435 3.98428 4.24302 4.26452 4.40225 4.65014 4.80688 4.90391 4.94564 5.05605 5.26644 5.36161 5.48477 5.66168 5.74467 5.78765 6.32269 7.14711 7.84863 8.30821 9.22419 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.005930 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.284494 B = 4720.396996 C = 5005.824045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.601 5.601 3 C -0.258 4.258 4 H 0.082 0.918 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.289 1.289 9 H -0.301 1.301 10 H -0.262 1.262 11 C 0.177 3.823 12 C -0.096 4.096 13 C -0.071 4.071 14 C -0.109 4.109 15 C -0.076 4.076 16 C -0.200 4.200 17 C 0.513 3.487 18 F -0.170 7.170 19 F -0.183 7.183 20 F -0.175 7.175 21 C -0.003 4.003 22 Cl -0.062 7.062 23 H 0.005 0.995 24 H 0.013 0.987 25 H 0.023 0.977 26 H 0.246 0.754 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -12.125 5.066 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.322 5.322 3 C -0.388 4.388 4 H 0.100 0.900 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.216 1.216 9 H -0.228 1.228 10 H -0.186 1.186 11 C 0.050 3.950 12 C -0.101 4.101 13 C -0.090 4.090 14 C -0.127 4.127 15 C -0.095 4.095 16 C -0.202 4.202 17 C 0.458 3.542 18 F -0.151 7.151 19 F -0.164 7.164 20 F -0.156 7.156 21 C -0.031 4.031 22 Cl -0.033 7.033 23 H 0.023 0.977 24 H 0.032 0.968 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.093 -12.028 5.029 14.390 hybrid contribution -0.692 1.018 0.126 1.238 sum 5.400 -11.010 5.155 13.302 Atomic orbital electron populations 1.20610 0.82664 0.95323 0.97444 1.44232 1.02022 1.01144 1.84801 1.19611 0.98620 0.85866 1.34690 0.90020 1.25817 0.98400 1.01884 0.98589 1.70274 1.19535 1.27314 1.41091 0.85265 0.78787 0.79907 0.76466 1.21623 1.22827 1.18608 1.20156 0.97624 0.87603 0.89580 1.21133 0.92713 0.95026 1.01189 1.21548 0.95828 0.95729 0.95884 1.21607 1.00596 0.96876 0.93596 1.21237 0.90036 0.96945 1.01259 1.19962 0.96811 1.09121 0.94327 1.18148 0.81521 0.76800 0.77690 1.93147 1.88166 1.93237 1.40578 1.93228 1.56466 1.70613 1.96111 1.93203 1.92102 1.49366 1.80973 1.20628 0.88228 1.01291 0.92918 1.98365 1.27377 1.94583 1.82981 0.97663 0.96775 0.95901 0.94510 0.90400 0.91788 0.83050 0.80790 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.25 7.34 127.77 0.94 10.19 16 2 N -0.60 -29.04 2.91 -731.31 -2.13 -31.17 16 3 C -0.26 -13.39 9.67 84.03 0.81 -12.57 16 4 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 5 C -0.05 -2.81 5.11 84.86 0.43 -2.38 16 6 N -0.94 -55.21 10.62 21.65 0.23 -54.98 16 7 Si 0.97 43.90 29.57 68.60 2.03 45.93 16 8 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 C 0.18 6.75 5.40 85.64 0.46 7.21 16 12 C -0.10 -3.44 5.47 -19.84 -0.11 -3.55 16 13 C -0.07 -2.07 9.67 22.26 0.22 -1.85 16 14 C -0.11 -2.57 10.05 22.27 0.22 -2.35 16 15 C -0.08 -1.95 9.43 22.26 0.21 -1.74 16 16 C -0.20 -6.40 5.37 -19.84 -0.11 -6.50 16 17 C 0.51 15.88 2.86 71.24 0.20 16.09 16 18 F -0.17 -4.56 15.97 44.97 0.72 -3.84 16 19 F -0.18 -6.46 16.40 44.97 0.74 -5.72 16 20 F -0.18 -5.37 16.39 44.97 0.74 -4.63 16 21 C 0.00 -0.10 6.25 22.32 0.14 0.03 16 22 Cl -0.06 -2.32 21.75 -2.72 -0.06 -2.38 16 23 H 0.01 0.28 6.98 -2.39 -0.02 0.26 16 24 H 0.01 0.75 7.10 -2.39 -0.02 0.74 16 25 H 0.02 1.01 6.75 -2.39 -0.02 0.99 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 27 H 0.08 2.67 7.90 -2.39 -0.02 2.65 16 28 H 0.06 2.31 7.09 -2.39 -0.02 2.30 16 29 H 0.15 3.84 8.04 -2.91 -0.02 3.82 16 30 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.17 3.20 7.16 -2.91 -0.02 3.17 16 Total: -1.00 -63.14 286.76 6.86 -56.28 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: 1.17 Total: -2.07 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 3.42 Total: 2.58 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.90 Total: -86.15 kcal Atomic # 9 Polarization: -16.38 SS G_CDS: 2.19 Total: -14.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.06 Total: -2.38 kcal Total: -63.14 6.86 -56.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205050279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.487 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds