Wall clock time and date at job start Tue Mar 31 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48503 * 109.46975 * 269.99396 * 3 2 1 5 5 H 1.48497 * 109.47309 * 29.99612 * 3 2 1 6 6 H 1.48507 * 109.46759 * 149.99640 * 3 2 1 7 7 C 1.37877 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99812 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99721 * 180.02562 * 7 2 1 10 10 N 1.46908 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99876 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46895 * 179.97438 * 11 10 9 13 13 N 1.30972 * 126.43217 * 90.28247 * 12 11 10 14 14 C 1.35225 * 105.57707 * 180.09666 * 13 12 11 15 15 C 1.48396 * 126.41455 * 179.90278 * 14 13 12 16 16 C 1.39348 * 120.12700 * 179.71741 * 15 14 13 17 17 C 1.37983 * 119.89370 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.15044 * 0.02562 * 17 16 15 19 19 C 1.38268 * 120.25616 * 359.97438 * 18 17 16 20 20 C 1.38179 * 120.10412 * 0.02562 * 19 18 17 21 21 Cl 1.73606 * 120.07350 * 179.97438 * 20 19 18 22 22 N 1.30776 * 107.17093 * 359.64236 * 14 13 12 23 23 O 1.21298 * 110.09154 * 0.22688 * 22 14 13 24 24 H 0.97003 * 119.99923 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47270 * 60.00688 * 9 7 2 26 26 H 1.08998 * 109.47026 * 299.99872 * 9 7 2 27 27 H 1.00899 * 110.99900 * 303.95812 * 10 9 7 28 28 H 1.09002 * 109.46984 * 60.00370 * 11 10 9 29 29 H 1.08993 * 109.47462 * 300.00253 * 11 10 9 30 30 H 1.07999 * 120.05000 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.92940 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.87248 * 179.70565 * 18 17 16 33 33 H 1.07991 * 119.94179 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 6 5.9338 -4.0520 0.0015 13 7 6.1783 -4.7908 -1.0520 14 6 6.5632 -5.9943 -0.5702 15 6 6.9487 -7.1819 -1.3721 16 6 7.3314 -8.3611 -0.7360 17 6 7.6884 -9.4627 -1.4864 18 6 7.6676 -9.3985 -2.8684 19 6 7.2889 -8.2316 -3.5060 20 6 6.9293 -7.1221 -2.7649 21 17 6.4546 -5.6571 -3.5664 22 7 6.5376 -5.9138 0.7348 23 8 6.1788 -4.8068 1.0771 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6253 -3.0955 0.7821 28 1 5.8465 -2.1144 0.8910 29 1 5.8465 -2.1143 -0.8889 30 1 7.3485 -8.4128 0.3426 31 1 7.9847 -10.3771 -0.9940 32 1 7.9524 -10.2619 -3.4513 33 1 7.2749 -8.1870 -4.5849 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211452470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:54 Heat of formation + Delta-G solvation = 98.121518 kcal Electronic energy + Delta-G solvation = -19731.321275 eV Core-core repulsion = 16400.611337 eV Total energy + Delta-G solvation = -3330.709939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.44437 -39.58724 -36.44059 -36.23880 -35.59718 -33.19952 -32.20954 -31.10303 -30.78952 -28.40039 -25.30907 -24.89212 -23.38641 -22.42418 -21.33366 -21.00535 -18.08895 -18.00524 -17.06350 -16.80086 -15.99550 -15.78739 -15.30566 -14.53337 -14.29222 -14.06290 -13.98746 -13.91934 -13.62453 -12.97025 -12.54063 -12.14563 -11.92795 -11.82366 -11.73764 -11.66664 -11.60602 -11.32745 -10.82932 -10.72220 -10.29790 -10.27337 -9.93141 -9.40640 -9.21054 -8.84193 -8.65475 -7.78254 -6.11482 -4.11177 0.37676 0.84734 1.35135 2.05716 2.40246 2.87240 3.25467 3.32682 3.33049 3.36067 3.41038 3.89782 4.36095 4.45316 4.58874 4.74222 4.92532 4.96966 5.06857 5.15603 5.21147 5.39452 5.48645 5.55025 5.74671 5.82450 5.92751 5.98046 6.09267 6.34973 6.56115 6.83891 7.39120 7.65961 8.01908 8.18589 8.52687 8.96053 9.48237 11.01561 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003254 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.901166 B = 8603.420945 C = 9056.338079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.167 3.833 10 N -0.671 5.671 11 C 0.146 3.854 12 C 0.202 3.798 13 N -0.443 5.443 14 C 0.200 3.800 15 C -0.009 4.009 16 C -0.075 4.075 17 C -0.121 4.121 18 C -0.093 4.093 19 C -0.117 4.117 20 C -0.004 4.004 21 Cl -0.022 7.022 22 N -0.378 5.378 23 O 0.079 5.921 24 H 0.265 0.735 25 H -0.008 1.008 26 H 0.029 0.971 27 H 0.343 0.657 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.609 -16.514 -3.791 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.098 0.902 9 C 0.040 3.960 10 N -0.304 5.304 11 C 0.015 3.985 12 C -0.019 4.019 13 N -0.176 5.176 14 C -0.070 4.070 15 C -0.012 4.012 16 C -0.095 4.095 17 C -0.139 4.139 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.033 4.033 21 Cl 0.007 6.993 22 N -0.084 5.084 23 O 0.018 5.982 24 H 0.075 0.925 25 H 0.010 0.990 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.595 -17.031 -4.443 25.604 hybrid contribution 0.362 1.411 0.882 1.703 sum 18.957 -15.620 -3.561 24.820 Atomic orbital electron populations 1.69893 1.06205 1.27041 1.50395 1.24891 0.94771 0.98967 0.94561 0.86822 0.80236 0.83755 0.78690 1.20025 1.21137 1.19112 1.20970 0.88533 0.95018 1.51318 0.90156 1.20067 0.97085 0.83406 0.95455 1.60545 1.01506 1.18213 1.50182 1.20514 0.92558 0.81621 1.03842 1.29111 0.94584 0.98362 0.79889 1.72431 1.16863 1.00771 1.27539 1.23715 1.01628 0.93975 0.87674 1.17236 1.03449 0.90482 0.90016 1.21192 0.96478 0.90968 1.00880 1.21160 1.00272 0.98519 0.93979 1.21291 0.97688 0.97469 0.94710 1.21075 1.00319 0.91507 1.00663 1.21087 1.00220 0.90518 0.91472 1.98453 1.89382 1.32813 1.78616 1.74828 1.18935 0.99901 1.14759 1.85261 1.60297 1.16385 1.36254 0.92492 0.98993 0.95303 0.83942 0.91955 0.86843 0.84377 0.84694 0.84632 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.44 9.87 -34.44 -0.34 -14.78 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.17 3.79 4.51 -4.97 -0.02 3.77 16 10 N -0.67 -13.13 6.48 -116.34 -0.75 -13.88 16 11 C 0.15 2.23 6.31 -4.98 -0.03 2.20 16 12 C 0.20 3.16 8.01 -12.99 -0.10 3.06 16 13 N -0.44 -7.37 8.90 -9.88 -0.09 -7.45 16 14 C 0.20 3.12 7.72 -156.11 -1.21 1.92 16 15 C -0.01 -0.12 5.88 -104.86 -0.62 -0.74 16 16 C -0.08 -0.79 9.69 -39.26 -0.38 -1.17 16 17 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 18 C -0.09 -0.68 10.04 -39.52 -0.40 -1.07 16 19 C -0.12 -1.07 9.82 -39.59 -0.39 -1.46 16 20 C 0.00 -0.05 6.34 -39.16 -0.25 -0.30 16 21 Cl -0.02 -0.31 26.16 -51.86 -1.36 -1.67 16 22 N -0.38 -5.90 11.86 30.97 0.37 -5.54 16 23 O 0.08 1.22 11.29 18.05 0.20 1.42 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H -0.01 -0.17 7.20 -51.94 -0.37 -0.54 16 26 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 27 H 0.34 6.53 8.72 -39.29 -0.34 6.19 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 30 H 0.14 1.36 7.87 -52.49 -0.41 0.95 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -31.72 308.74 -8.33 -40.05 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.23 Total: 0.69 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.23 Total: -8.02 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.30 Total: -53.23 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.42 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.36 Total: -1.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.72 -8.33 -40.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211452470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.169 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds