Wall clock time and date at job start Tue Mar 31 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48503 * 109.46975 * 269.99396 * 3 2 1 5 5 H 1.48497 * 109.47309 * 29.99612 * 3 2 1 6 6 H 1.48507 * 109.46759 * 149.99640 * 3 2 1 7 7 C 1.37877 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99812 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99721 * 180.02562 * 7 2 1 10 10 N 1.46908 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99876 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46895 * 179.97438 * 11 10 9 13 13 N 1.30972 * 126.43217 * 90.28247 * 12 11 10 14 14 C 1.35225 * 105.57707 * 180.09666 * 13 12 11 15 15 C 1.48396 * 126.41455 * 179.90278 * 14 13 12 16 16 C 1.39348 * 120.12700 * 179.71741 * 15 14 13 17 17 C 1.37983 * 119.89370 * 179.97438 * 16 15 14 18 18 C 1.38365 * 120.15044 * 0.02562 * 17 16 15 19 19 C 1.38268 * 120.25616 * 359.97438 * 18 17 16 20 20 C 1.38179 * 120.10412 * 0.02562 * 19 18 17 21 21 Cl 1.73606 * 120.07350 * 179.97438 * 20 19 18 22 22 N 1.30776 * 107.17093 * 359.64236 * 14 13 12 23 23 O 1.21298 * 110.09154 * 0.22688 * 22 14 13 24 24 H 0.97003 * 119.99923 * 0.02562 * 1 2 3 25 25 H 1.08989 * 109.47270 * 60.00688 * 9 7 2 26 26 H 1.08998 * 109.47026 * 299.99872 * 9 7 2 27 27 H 1.00899 * 110.99900 * 303.95812 * 10 9 7 28 28 H 1.09002 * 109.46984 * 60.00370 * 11 10 9 29 29 H 1.08993 * 109.47462 * 300.00253 * 11 10 9 30 30 H 1.07999 * 120.05000 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.92940 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.87248 * 179.70565 * 18 17 16 33 33 H 1.07991 * 119.94179 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 6 5.9338 -4.0520 0.0015 13 7 6.1783 -4.7908 -1.0520 14 6 6.5632 -5.9943 -0.5702 15 6 6.9487 -7.1819 -1.3721 16 6 7.3314 -8.3611 -0.7360 17 6 7.6884 -9.4627 -1.4864 18 6 7.6676 -9.3985 -2.8684 19 6 7.2889 -8.2316 -3.5060 20 6 6.9293 -7.1221 -2.7649 21 17 6.4546 -5.6571 -3.5664 22 7 6.5376 -5.9138 0.7348 23 8 6.1788 -4.8068 1.0771 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8751 -0.6804 -0.8888 27 1 3.6253 -3.0955 0.7821 28 1 5.8465 -2.1144 0.8910 29 1 5.8465 -2.1143 -0.8889 30 1 7.3485 -8.4128 0.3426 31 1 7.9847 -10.3771 -0.9940 32 1 7.9524 -10.2619 -3.4513 33 1 7.2749 -8.1870 -4.5849 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211452470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:54 Heat of formation + Delta-G solvation = 75.805735 kcal Electronic energy + Delta-G solvation = -19732.288960 eV Core-core repulsion = 16400.611337 eV Total energy + Delta-G solvation = -3331.677624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.62888 -40.34906 -37.70200 -37.35556 -36.81951 -34.86788 -33.78392 -31.90995 -31.70111 -30.08746 -26.89253 -25.89344 -24.40001 -23.27369 -23.18385 -22.04041 -19.31715 -19.21904 -18.75027 -17.84890 -17.24171 -16.81725 -16.30917 -16.13833 -15.57676 -15.35023 -14.94483 -14.82560 -14.75347 -14.53855 -14.15825 -13.52198 -13.26165 -12.97510 -12.82737 -12.63386 -12.51455 -12.47215 -12.42392 -12.38417 -11.84928 -11.55413 -11.41177 -11.34225 -10.78952 -9.99066 -9.70569 -9.31875 -8.27906 -6.33929 -0.52754 0.12055 0.21851 1.16354 1.33503 1.40873 1.42622 1.52910 1.67428 2.37340 2.37867 2.60223 2.79823 3.06914 3.47364 3.65089 3.85076 3.97496 4.21257 4.24427 4.27481 4.39382 4.46056 4.60517 4.75735 4.79274 4.90203 5.05170 5.12598 5.21564 5.32192 5.49794 5.70397 5.81174 6.39710 6.50905 6.74084 7.00159 7.30450 8.89045 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003254 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.901166 B = 8603.420945 C = 9056.338079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.237 1.237 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.178 3.822 10 N -0.688 5.688 11 C 0.151 3.849 12 C 0.200 3.800 13 N -0.462 5.462 14 C 0.197 3.803 15 C -0.046 4.046 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.023 4.023 21 Cl -0.050 7.050 22 N -0.389 5.389 23 O 0.077 5.923 24 H 0.268 0.732 25 H 0.009 0.991 26 H 0.037 0.963 27 H 0.342 0.658 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.357 -17.460 -4.155 27.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.160 1.160 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.050 3.950 10 N -0.321 5.321 11 C 0.021 3.979 12 C -0.021 4.021 13 N -0.195 5.195 14 C -0.073 4.073 15 C -0.048 4.048 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.136 4.136 20 C -0.052 4.052 21 Cl -0.020 7.020 22 N -0.096 5.096 23 O 0.018 5.982 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.055 0.945 27 H 0.160 0.840 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.189 0.811 32 H 0.195 0.805 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 21.370 -17.996 -4.794 28.347 hybrid contribution -0.486 1.445 0.962 1.803 sum 20.884 -16.551 -3.832 26.921 Atomic orbital electron populations 1.70069 1.08482 1.28330 1.52201 1.25938 0.95649 1.03598 0.93972 0.85613 0.79689 0.77732 0.79270 1.19228 1.21118 1.16006 1.21296 0.91501 0.93352 1.50857 0.94938 1.19813 0.93577 0.85331 0.96280 1.60344 1.04515 1.16603 1.50675 1.20564 0.89748 0.81756 1.05836 1.29143 0.94594 0.98452 0.79932 1.72438 1.17428 1.01508 1.28135 1.24230 1.00764 0.94465 0.87820 1.17502 1.06099 0.90796 0.90447 1.21368 0.96634 0.90999 1.01256 1.21609 0.98286 0.98632 0.94306 1.21803 0.95094 0.97719 0.94820 1.21420 0.99468 0.91065 1.01675 1.21300 1.01893 0.90605 0.91386 1.98433 1.89866 1.34786 1.78942 1.74796 1.19861 0.99979 1.14984 1.85234 1.60453 1.16416 1.36137 0.92359 0.97363 0.94510 0.84023 0.88737 0.85868 0.84370 0.81132 0.80491 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 42.26 27.47 68.60 1.88 44.14 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.53 -30.19 9.87 25.60 0.25 -29.93 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 9 C 0.18 7.87 4.51 85.55 0.39 8.25 16 10 N -0.69 -26.70 6.48 -522.00 -3.38 -30.08 16 11 C 0.15 4.42 6.31 85.56 0.54 4.96 16 12 C 0.20 6.23 8.01 88.36 0.71 6.94 16 13 N -0.46 -15.53 8.90 -302.48 -2.69 -18.22 16 14 C 0.20 6.23 7.72 137.28 1.06 7.29 16 15 C -0.05 -1.21 5.88 -20.02 -0.12 -1.32 16 16 C -0.08 -1.61 9.69 22.48 0.22 -1.40 16 17 C -0.11 -1.32 10.03 22.24 0.22 -1.10 16 18 C -0.08 -0.79 10.04 22.31 0.22 -0.57 16 19 C -0.12 -1.88 9.82 22.26 0.22 -1.66 16 20 C -0.02 -0.56 6.34 22.54 0.14 -0.41 16 21 Cl -0.05 -1.40 26.16 -2.72 -0.07 -1.47 16 22 N -0.39 -12.25 11.86 -59.10 -0.70 -12.95 16 23 O 0.08 2.37 11.29 74.65 0.84 3.22 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 26 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 27 H 0.34 13.21 8.72 -89.70 -0.78 12.43 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.14 2.60 7.87 -2.91 -0.02 2.58 16 31 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.16 1.84 8.06 -2.92 -0.02 1.82 16 Total: -1.00 -72.25 308.74 0.82 -71.42 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.32 Total: 11.05 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.32 Total: -8.16 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.47 Total: -120.20 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.84 Total: 3.22 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -72.25 0.82 -71.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211452470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.230 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds