Wall clock time and date at job start Tue Mar 31 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48502 * 109.47229 * 270.00327 * 3 2 1 5 5 H 1.48505 * 109.46662 * 30.00022 * 3 2 1 6 6 H 1.48494 * 109.47204 * 150.00003 * 3 2 1 7 7 C 1.37877 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00424 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00100 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.47259 * 60.00308 * 9 7 2 11 11 N 1.46898 * 109.47236 * 300.00482 * 9 7 2 12 12 C 1.50703 * 109.47603 * 179.97438 * 9 7 2 13 13 N 1.30275 * 126.27966 * 75.00003 * 12 9 7 14 14 N 1.28667 * 109.38088 * 179.73786 * 13 12 9 15 15 C 1.30274 * 109.37816 * 0.43876 * 14 13 12 16 16 C 1.50700 * 126.28248 * 179.82856 * 15 14 13 17 17 C 1.50700 * 109.46999 * 89.69162 * 16 15 14 18 18 C 1.38245 * 119.98447 * 90.00332 * 17 16 15 19 19 C 1.38217 * 120.01048 * 179.97438 * 18 17 16 20 20 C 1.38351 * 119.98541 * 0.30201 * 19 18 17 21 21 Cl 1.73604 * 120.00786 * 179.69323 * 20 19 18 22 22 C 1.38349 * 119.97465 * 359.42086 * 20 19 18 23 23 C 1.38212 * 119.98580 * 0.55464 * 22 20 19 24 24 O 1.34358 * 126.28257 * 255.00433 * 12 9 7 25 25 H 0.96999 * 119.99532 * 359.97438 * 1 2 3 26 26 H 1.00906 * 110.99986 * 176.04489 * 11 9 7 27 27 H 1.00900 * 111.00047 * 299.99322 * 11 9 7 28 28 H 1.09006 * 109.46863 * 329.69536 * 16 15 14 29 29 H 1.08993 * 109.47520 * 209.69750 * 16 15 14 30 30 H 1.07999 * 119.99366 * 0.02562 * 18 17 16 31 31 H 1.08002 * 120.00169 * 180.02562 * 19 18 17 32 32 H 1.08008 * 120.00633 * 180.29755 * 22 20 19 33 33 H 1.08001 * 119.99227 * 179.72130 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 1 3.8752 -0.6806 0.8889 11 7 4.0008 -0.5014 -1.2005 12 6 4.0139 -2.6150 -0.0010 13 7 4.0142 -3.4326 -1.0152 14 7 4.5210 -4.5592 -0.6553 15 6 4.8527 -4.5016 0.6031 16 6 5.4750 -5.6097 1.4130 17 6 6.9762 -5.5218 1.3146 18 6 7.6856 -4.7674 2.2305 19 6 9.0625 -4.6868 2.1411 20 6 9.7302 -5.3562 1.1310 21 17 11.4589 -5.2488 1.0134 22 6 9.0202 -6.1156 0.2182 23 6 7.6434 -6.1959 0.3089 24 8 4.5435 -3.2710 1.0451 25 1 -0.4849 0.8401 0.0004 26 1 5.0074 -0.4313 -1.1923 27 1 3.6770 -0.9587 -2.0396 28 1 5.1414 -6.5731 1.0271 29 1 5.1728 -5.5117 2.4556 30 1 7.1639 -4.2416 3.0165 31 1 9.6166 -4.0977 2.8569 32 1 9.5414 -6.6423 -0.5676 33 1 7.0887 -6.7851 -0.4063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217716942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:56 Heat of formation + Delta-G solvation = 50.445718 kcal Electronic energy + Delta-G solvation = -20037.087429 eV Core-core repulsion = 16704.310113 eV Total energy + Delta-G solvation = -3332.777316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.65261 -39.72019 -36.86679 -35.62782 -35.39210 -33.75716 -32.01858 -31.40215 -30.02591 -27.42862 -26.51112 -23.77474 -23.14856 -22.72755 -21.31516 -20.76369 -17.56974 -17.33652 -16.79014 -16.43582 -15.90989 -15.49568 -15.16406 -14.94661 -14.52228 -14.05155 -13.96047 -13.85361 -13.58975 -12.79259 -12.57765 -12.14470 -12.01032 -11.84709 -11.72918 -11.69818 -11.35467 -11.12459 -10.95936 -10.81597 -10.54140 -10.01697 -9.58562 -9.36545 -9.01645 -8.85524 -8.72619 -8.19741 -6.20266 -4.35618 0.71354 0.97229 1.69964 1.81244 2.75301 2.94252 3.32561 3.44762 3.49987 3.60321 4.27141 4.40743 4.43171 4.46901 4.56642 4.77693 4.95730 4.98177 5.13204 5.25583 5.30340 5.40781 5.60773 5.62411 5.80462 5.84052 5.89482 5.96945 6.18152 6.19308 6.44938 6.54493 7.16861 7.77856 8.03083 8.36732 8.74889 8.87082 9.36283 10.88400 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.003397 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.407647 B = 8239.537814 C = 8766.902596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.090 3.910 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.312 1.312 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.076 0.924 9 C 0.277 3.723 10 H 0.073 0.927 11 N -0.819 5.819 12 C 0.189 3.811 13 N -0.305 5.305 14 N -0.282 5.282 15 C 0.127 3.873 16 C 0.024 3.976 17 C -0.084 4.084 18 C -0.093 4.093 19 C -0.111 4.111 20 C -0.032 4.032 21 Cl -0.073 7.073 22 C -0.111 4.111 23 C -0.087 4.087 24 O -0.228 6.228 25 H 0.269 0.731 26 H 0.316 0.684 27 H 0.352 0.648 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.275 -11.437 5.122 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.241 1.241 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.094 0.906 9 C 0.164 3.836 10 H 0.090 0.910 11 N -0.350 5.350 12 C -0.023 4.023 13 N -0.150 5.150 14 N -0.130 5.130 15 C -0.086 4.086 16 C -0.015 4.015 17 C -0.085 4.085 18 C -0.111 4.111 19 C -0.130 4.130 20 C -0.059 4.059 21 Cl -0.044 7.044 22 C -0.130 4.130 23 C -0.105 4.105 24 O -0.106 6.106 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.167 0.833 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.661 -11.153 4.153 22.133 hybrid contribution 1.116 0.322 0.841 1.434 sum 19.777 -10.831 4.995 23.095 Atomic orbital electron populations 1.69916 1.06746 1.27923 1.47524 1.24924 0.94728 0.99965 0.92002 0.85885 0.78371 0.80529 0.78541 1.20039 1.24142 1.19808 1.20489 0.85526 0.95460 1.55088 0.90569 1.18629 0.97038 0.75486 0.92423 0.90950 1.59568 1.13663 1.55472 1.06273 1.30720 0.91540 1.00478 0.79605 1.74308 1.17998 0.96777 1.25955 1.74240 1.12631 1.16632 1.09472 1.27354 1.02291 0.86233 0.92675 1.18907 0.89725 0.93125 0.99724 1.19728 0.94388 0.98230 0.96183 1.21116 0.93279 0.97615 0.99096 1.21049 0.94399 0.99696 0.97854 1.20997 0.84709 1.01489 0.98680 1.98374 1.10885 1.97318 1.97844 1.21064 0.94096 0.99085 0.98760 1.21112 0.93432 0.98751 0.97188 1.84817 1.60740 1.23511 1.41551 0.92105 0.87186 0.83280 0.86415 0.87563 0.84595 0.84695 0.84688 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.94 22.42 26.03 -169.99 -4.42 18.00 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.31 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.53 -14.43 9.29 -34.44 -0.32 -14.75 16 8 H 0.08 2.33 7.98 -52.48 -0.42 1.92 16 9 C 0.28 6.30 2.65 -70.02 -0.19 6.12 16 10 H 0.07 1.62 7.20 -51.93 -0.37 1.25 16 11 N -0.82 -16.87 6.75 -6.65 -0.04 -16.91 16 12 C 0.19 4.09 7.23 -12.94 -0.09 4.00 16 13 N -0.30 -6.71 12.10 32.55 0.39 -6.31 16 14 N -0.28 -5.52 12.22 32.55 0.40 -5.12 16 15 C 0.13 2.11 7.71 -12.94 -0.10 2.01 16 16 C 0.02 0.25 5.97 -29.03 -0.17 0.08 16 17 C -0.08 -0.87 5.12 -104.62 -0.54 -1.41 16 18 C -0.09 -0.91 9.70 -39.59 -0.38 -1.29 16 19 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 20 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 21 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 22 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 23 C -0.09 -0.85 9.70 -39.59 -0.38 -1.24 16 24 O -0.23 -4.40 10.87 5.39 0.06 -4.34 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.32 5.55 9.06 -39.29 -0.36 5.19 16 27 H 0.35 7.30 8.87 -39.29 -0.35 6.95 16 28 H 0.12 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -31.95 310.30 -6.17 -38.11 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.20 Total: 7.11 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.30 Total: -7.51 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 1.52 Total: -53.87 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.06 Total: -4.34 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.42 Total: 18.00 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.95 -6.17 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217716942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.559 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds