Wall clock time and date at job start Tue Mar 31 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00356 * 2 1 4 4 H 1.48502 * 109.47229 * 270.00327 * 3 2 1 5 5 H 1.48505 * 109.46662 * 30.00022 * 3 2 1 6 6 H 1.48494 * 109.47204 * 150.00003 * 3 2 1 7 7 C 1.37877 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00424 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00100 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.47259 * 60.00308 * 9 7 2 11 11 N 1.46898 * 109.47236 * 300.00482 * 9 7 2 12 12 C 1.50703 * 109.47603 * 179.97438 * 9 7 2 13 13 N 1.30275 * 126.27966 * 75.00003 * 12 9 7 14 14 N 1.28667 * 109.38088 * 179.73786 * 13 12 9 15 15 C 1.30274 * 109.37816 * 0.43876 * 14 13 12 16 16 C 1.50700 * 126.28248 * 179.82856 * 15 14 13 17 17 C 1.50700 * 109.46999 * 89.69162 * 16 15 14 18 18 C 1.38245 * 119.98447 * 90.00332 * 17 16 15 19 19 C 1.38217 * 120.01048 * 179.97438 * 18 17 16 20 20 C 1.38351 * 119.98541 * 0.30201 * 19 18 17 21 21 Cl 1.73604 * 120.00786 * 179.69323 * 20 19 18 22 22 C 1.38349 * 119.97465 * 359.42086 * 20 19 18 23 23 C 1.38212 * 119.98580 * 0.55464 * 22 20 19 24 24 O 1.34358 * 126.28257 * 255.00433 * 12 9 7 25 25 H 0.96999 * 119.99532 * 359.97438 * 1 2 3 26 26 H 1.00906 * 110.99986 * 176.04489 * 11 9 7 27 27 H 1.00900 * 111.00047 * 299.99322 * 11 9 7 28 28 H 1.09006 * 109.46863 * 329.69536 * 16 15 14 29 29 H 1.08993 * 109.47520 * 209.69750 * 16 15 14 30 30 H 1.07999 * 119.99366 * 0.02562 * 18 17 16 31 31 H 1.08002 * 120.00169 * 180.02562 * 19 18 17 32 32 H 1.08008 * 120.00633 * 180.29755 * 22 20 19 33 33 H 1.08001 * 119.99227 * 179.72130 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1295 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 1 3.8752 -0.6806 0.8889 11 7 4.0008 -0.5014 -1.2005 12 6 4.0139 -2.6150 -0.0010 13 7 4.0142 -3.4326 -1.0152 14 7 4.5210 -4.5592 -0.6553 15 6 4.8527 -4.5016 0.6031 16 6 5.4750 -5.6097 1.4130 17 6 6.9762 -5.5218 1.3146 18 6 7.6856 -4.7674 2.2305 19 6 9.0625 -4.6868 2.1411 20 6 9.7302 -5.3562 1.1310 21 17 11.4589 -5.2488 1.0134 22 6 9.0202 -6.1156 0.2182 23 6 7.6434 -6.1959 0.3089 24 8 4.5435 -3.2710 1.0451 25 1 -0.4849 0.8401 0.0004 26 1 5.0074 -0.4313 -1.1923 27 1 3.6770 -0.9587 -2.0396 28 1 5.1414 -6.5731 1.0271 29 1 5.1728 -5.5117 2.4556 30 1 7.1639 -4.2416 3.0165 31 1 9.6166 -4.0977 2.8569 32 1 9.5414 -6.6423 -0.5676 33 1 7.0887 -6.7851 -0.4063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217716942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:56 Heat of formation + Delta-G solvation = 24.865635 kcal Electronic energy + Delta-G solvation = -20038.196665 eV Core-core repulsion = 16704.310113 eV Total energy + Delta-G solvation = -3333.886552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.17294 -40.45502 -37.61400 -37.23642 -37.05390 -34.80202 -34.01572 -32.11047 -31.29541 -28.92279 -28.00002 -25.50901 -23.98370 -23.84217 -22.51971 -22.25726 -19.30869 -18.37956 -18.31617 -17.84480 -17.02308 -16.66633 -16.48940 -16.23746 -16.00125 -15.76582 -14.74714 -14.53959 -14.51286 -14.35243 -14.07306 -13.53514 -13.41776 -13.07169 -12.85331 -12.71869 -12.68579 -12.46744 -12.43762 -12.09783 -11.82441 -11.74761 -11.66284 -10.84018 -10.48718 -10.07741 -9.89343 -9.69564 -8.34114 -6.54305 -0.08986 0.25817 0.26396 1.08346 1.36506 1.40701 1.53370 1.60963 1.72790 2.47025 2.50121 2.97083 3.04340 3.49548 3.59590 3.73458 3.87830 3.89594 3.99089 4.27007 4.29760 4.41395 4.49551 4.58800 4.62373 4.81294 4.81689 4.95101 5.12190 5.18385 5.21356 5.43607 5.73165 5.92970 6.13792 6.53816 6.67652 7.21594 7.33479 8.78998 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.003397 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.407647 B = 8239.537814 C = 8766.902596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.039 3.961 3 Si 1.002 2.998 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.026 0.974 9 C 0.286 3.714 10 H 0.084 0.916 11 N -0.816 5.816 12 C 0.169 3.831 13 N -0.324 5.324 14 N -0.312 5.312 15 C 0.154 3.846 16 C 0.024 3.976 17 C -0.096 4.096 18 C -0.097 4.097 19 C -0.117 4.117 20 C -0.041 4.041 21 Cl -0.071 7.071 22 C -0.117 4.117 23 C -0.092 4.092 24 O -0.231 6.231 25 H 0.272 0.728 26 H 0.339 0.661 27 H 0.351 0.649 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.631 -11.425 5.889 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.162 4.162 3 Si 0.829 3.171 4 H -0.197 1.197 5 H -0.245 1.245 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.045 0.955 9 C 0.173 3.827 10 H 0.101 0.899 11 N -0.348 5.348 12 C -0.045 4.045 13 N -0.169 5.169 14 N -0.158 5.158 15 C -0.058 4.058 16 C -0.014 4.014 17 C -0.097 4.097 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.067 4.067 21 Cl -0.042 7.042 22 C -0.136 4.136 23 C -0.110 4.110 24 O -0.110 6.110 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 21.051 -11.175 4.914 24.335 hybrid contribution 0.450 0.119 0.633 0.785 sum 21.501 -11.056 5.547 24.805 Atomic orbital electron populations 1.70041 1.08690 1.28999 1.49640 1.25822 0.95322 1.03649 0.91455 0.84846 0.77789 0.75697 0.78764 1.19701 1.24454 1.17313 1.20582 0.88262 0.93486 1.54665 0.95533 1.18233 0.94148 0.76833 0.93515 0.89884 1.59318 1.15394 1.54768 1.05296 1.30300 0.93322 1.00475 0.80366 1.74239 1.18205 0.97680 1.26824 1.74192 1.14509 1.15984 1.11133 1.28573 0.99047 0.85934 0.92231 1.19335 0.89849 0.91717 1.00469 1.19719 0.93873 0.99169 0.96905 1.21335 0.93519 0.97345 0.99288 1.21269 0.94524 0.99695 0.98045 1.21181 0.84989 1.01607 0.98934 1.98375 1.10665 1.97303 1.97840 1.21267 0.94145 0.99091 0.99086 1.21300 0.93739 0.98771 0.97209 1.84814 1.60750 1.24468 1.40949 0.91875 0.84706 0.83430 0.84125 0.84873 0.83263 0.83253 0.83353 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.73 16 2 C 0.04 2.19 5.47 84.65 0.46 2.65 16 3 Si 1.00 45.55 26.03 68.60 1.79 47.33 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.32 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.53 -29.67 9.29 25.60 0.24 -29.43 16 8 H 0.03 1.70 7.98 -2.91 -0.02 1.68 16 9 C 0.29 12.79 2.65 43.42 0.11 12.90 16 10 H 0.08 3.54 7.20 -2.39 -0.02 3.53 16 11 N -0.82 -32.20 6.75 -174.95 -1.18 -33.38 16 12 C 0.17 7.24 7.23 88.34 0.64 7.88 16 13 N -0.32 -14.21 12.10 -165.50 -2.00 -16.21 16 14 N -0.31 -11.94 12.22 -165.50 -2.02 -13.97 16 15 C 0.15 4.87 7.71 88.34 0.68 5.55 16 16 C 0.02 0.45 5.97 29.10 0.17 0.63 16 17 C -0.10 -1.73 5.12 -19.86 -0.10 -1.83 16 18 C -0.10 -1.64 9.70 22.27 0.22 -1.42 16 19 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 20 C -0.04 -0.72 6.32 22.32 0.14 -0.58 16 21 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.26 16 22 C -0.12 -1.99 9.83 22.29 0.22 -1.77 16 23 C -0.09 -1.61 9.70 22.26 0.22 -1.39 16 24 O -0.23 -8.61 10.87 -3.63 -0.04 -8.64 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.34 11.01 9.06 -89.69 -0.81 10.20 16 27 H 0.35 14.26 8.87 -89.69 -0.80 13.46 16 28 H 0.14 2.02 8.09 -2.38 -0.02 2.00 16 29 H 0.13 1.81 8.08 -2.39 -0.02 1.79 16 30 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -70.17 310.30 -0.51 -70.68 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.49 Total: 20.73 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 3.22 Total: -8.54 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -4.91 Total: -120.30 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.04 Total: -8.64 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.79 Total: 47.33 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -70.17 -0.51 -70.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217716942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.545 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds