Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00185 * 2 1 4 4 H 1.48505 * 109.47364 * 270.00181 * 3 2 1 5 5 H 1.48500 * 109.46878 * 29.99940 * 3 2 1 6 6 H 1.48496 * 109.47233 * 150.00044 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00286 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47355 * 60.00063 * 9 7 2 11 11 N 1.46903 * 109.47122 * 300.00001 * 9 7 2 12 12 C 1.50700 * 109.47066 * 180.02562 * 9 7 2 13 13 N 1.30279 * 126.28506 * 74.97683 * 12 9 7 14 14 N 1.28666 * 109.37866 * 180.02562 * 13 12 9 15 15 C 1.30267 * 109.38454 * 359.97438 * 14 13 12 16 16 C 1.50700 * 126.28247 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47130 * 90.03000 * 16 15 14 18 18 C 1.38264 * 119.99067 * 89.99614 * 17 16 15 19 19 C 1.38224 * 120.02445 * 180.02562 * 18 17 16 20 20 C 1.38237 * 120.01313 * 0.26351 * 19 18 17 21 21 C 1.38338 * 119.98297 * 359.50743 * 20 19 18 22 22 Cl 1.73597 * 120.00852 * 180.25600 * 21 20 19 23 23 C 1.38189 * 119.99237 * 270.02509 * 17 16 15 24 24 O 1.34366 * 126.27943 * 255.25788 * 12 9 7 25 25 H 0.97003 * 119.99991 * 359.97438 * 1 2 3 26 26 H 1.00895 * 110.99808 * 176.04441 * 11 9 7 27 27 H 1.00894 * 111.00184 * 300.00258 * 11 9 7 28 28 H 1.08995 * 109.47261 * 330.03377 * 16 15 14 29 29 H 1.08997 * 109.47352 * 210.02921 * 16 15 14 30 30 H 1.07997 * 119.98741 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.99032 * 179.97438 * 19 18 17 32 32 H 1.07995 * 120.00242 * 179.74655 * 20 19 18 33 33 H 1.08000 * 120.00840 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2303 -3.6446 -0.0005 13 7 2.9382 -4.0537 1.0137 14 7 3.6649 -5.0521 0.6522 15 6 3.4449 -5.3142 -0.6047 16 6 4.0942 -6.4066 -1.4148 17 6 3.2682 -7.6633 -1.3168 18 6 2.2601 -7.9009 -2.2329 19 6 1.5017 -9.0530 -2.1434 20 6 1.7471 -9.9657 -1.1346 21 6 2.7586 -9.7308 -0.2207 22 17 3.0717 -10.8797 1.0424 23 6 3.5179 -8.5775 -0.3112 24 8 2.5375 -4.4280 -1.0481 25 1 -0.4850 0.8401 0.0004 26 1 -0.1571 -3.4138 1.1907 27 1 0.9651 -2.5260 2.0381 28 1 5.0953 -6.5990 -1.0289 29 1 4.1602 -6.0956 -2.4573 30 1 2.0648 -7.1856 -3.0181 31 1 0.7142 -9.2378 -2.8590 32 1 1.1517 -10.8638 -1.0624 33 1 4.3053 -8.3918 0.4043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217717600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = 50.484698 kcal Electronic energy + Delta-G solvation = -20036.019094 eV Core-core repulsion = 16703.243468 eV Total energy + Delta-G solvation = -3332.775626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.50021 -39.66160 -36.74696 -35.46091 -35.09511 -33.81017 -31.73850 -31.01257 -29.93986 -27.34617 -26.22833 -23.72116 -22.92329 -22.70568 -21.25876 -20.82829 -17.41656 -17.04651 -16.52355 -16.20063 -15.84267 -15.62253 -14.92693 -14.89205 -14.26426 -14.07732 -13.82281 -13.64749 -13.44948 -12.71456 -12.55596 -11.90366 -11.74840 -11.68519 -11.64785 -11.59323 -11.22968 -11.10578 -10.96123 -10.89261 -10.39033 -10.13722 -9.59187 -9.23005 -8.96832 -8.73300 -8.61133 -7.61880 -6.09517 -4.26234 0.83216 0.96336 1.82161 1.90874 2.89454 3.07348 3.26576 3.33681 3.37584 3.41561 4.33330 4.36978 4.41487 4.55363 4.77523 4.88883 4.96377 5.12855 5.15271 5.32542 5.35047 5.53000 5.58352 5.89258 5.94716 6.02979 6.04146 6.08879 6.22491 6.41793 6.50319 6.99333 7.68335 7.80435 8.27808 8.69411 8.82109 9.02035 9.42985 10.95485 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003233 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.522221 B = 8659.662150 C = 8706.408125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.088 3.912 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.311 3.689 10 H 0.070 0.930 11 N -0.785 5.785 12 C 0.185 3.815 13 N -0.314 5.314 14 N -0.283 5.283 15 C 0.118 3.882 16 C 0.026 3.974 17 C -0.076 4.076 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.109 4.109 21 C -0.036 4.036 22 Cl -0.071 7.071 23 C -0.091 4.091 24 O -0.230 6.230 25 H 0.262 0.738 26 H 0.304 0.696 27 H 0.336 0.664 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -19.147 -5.490 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.120 4.120 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.198 3.802 10 H 0.087 0.913 11 N -0.312 5.312 12 C -0.028 4.028 13 N -0.160 5.160 14 N -0.131 5.131 15 C -0.094 4.094 16 C -0.013 4.013 17 C -0.077 4.077 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.062 4.062 22 Cl -0.042 7.042 23 C -0.110 4.110 24 O -0.108 6.108 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.099 -18.514 -4.419 19.471 hybrid contribution 0.560 -0.047 -0.733 0.924 sum 4.660 -18.561 -5.152 19.819 Atomic orbital electron populations 1.70082 1.05737 1.26558 1.45230 1.24887 0.94808 0.98823 0.93532 0.86520 0.79985 0.82851 0.78183 1.20494 1.20882 1.19729 1.20609 0.92485 0.88201 1.56256 0.92305 1.18289 0.85077 0.83931 0.92934 0.91286 1.59383 1.26008 1.41273 1.04491 1.31780 0.97887 0.93943 0.79195 1.74303 1.07879 1.07683 1.26113 1.74212 1.19142 1.10218 1.09516 1.27295 0.94072 0.95245 0.92768 1.18860 0.97306 0.85420 0.99690 1.19562 0.97457 0.94971 0.95703 1.21263 0.94368 0.97329 0.98917 1.21119 0.99641 0.93768 0.98048 1.21104 0.96805 1.00510 0.94345 1.20891 0.99193 0.92937 0.93186 1.98375 1.95230 1.59328 1.51270 1.21014 0.99861 0.92085 0.98020 1.84850 1.47829 1.36444 1.41700 0.92850 0.88528 0.85061 0.86606 0.87582 0.84889 0.84758 0.84893 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.30 12.77 55.43 0.71 -22.60 16 2 C 0.09 2.36 5.39 -17.82 -0.10 2.27 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.46 8.71 -34.44 -0.30 -14.76 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.31 7.62 3.16 -70.02 -0.22 7.40 16 10 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 11 N -0.79 -18.21 8.53 -6.65 -0.06 -18.26 16 12 C 0.18 4.19 7.23 -12.94 -0.09 4.10 16 13 N -0.31 -7.20 12.09 32.55 0.39 -6.81 16 14 N -0.28 -5.80 12.22 32.55 0.40 -5.40 16 15 C 0.12 2.08 7.71 -12.94 -0.10 1.98 16 16 C 0.03 0.30 5.97 -29.03 -0.17 0.12 16 17 C -0.08 -0.85 5.11 -104.63 -0.54 -1.39 16 18 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 19 C -0.11 -0.98 10.05 -39.59 -0.40 -1.38 16 20 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 21 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 22 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 23 C -0.09 -1.04 9.49 -39.55 -0.38 -1.41 16 24 O -0.23 -4.66 10.87 5.37 0.06 -4.60 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 26 H 0.30 6.27 9.06 -39.29 -0.36 5.91 16 27 H 0.34 7.78 8.87 -39.30 -0.35 7.44 16 28 H 0.12 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -30.56 315.50 -6.78 -37.34 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.20 Total: 8.61 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.31 Total: -6.55 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 1.44 Total: -53.07 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: 0.06 Total: -4.60 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.56 -6.78 -37.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217717600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.823 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds