Wall clock time and date at job start Tue Mar 31 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48500 * 109.47520 * 94.86849 * 3 2 1 5 5 H 1.48502 * 109.47296 * 214.87128 * 3 2 1 6 6 H 1.48508 * 109.47004 * 334.87176 * 3 2 1 7 7 C 1.37871 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 6.79683 * 7 2 1 9 9 C 1.50708 * 120.00183 * 186.78907 * 7 2 1 10 10 H 1.08998 * 109.46572 * 2.44515 * 9 7 2 11 11 O 1.42904 * 109.46916 * 122.43701 * 9 7 2 12 12 C 1.35706 * 117.00260 * 270.00821 * 11 9 7 13 13 C 1.41927 * 126.88003 * 179.71479 * 12 11 9 14 14 C 1.35272 * 103.95993 * 179.90383 * 13 12 11 15 15 C 1.50707 * 126.70637 * 180.10666 * 14 13 12 16 16 Cl 1.80290 * 109.47173 * 90.30825 * 15 14 13 17 17 O 1.34078 * 106.58192 * 0.34474 * 14 13 12 18 18 N 1.20911 * 111.71863 * 359.76456 * 17 14 13 19 19 C 1.50694 * 109.47322 * 242.43974 * 9 7 2 20 20 C 1.38237 * 120.00120 * 277.84248 * 19 9 7 21 21 C 1.38233 * 119.99689 * 179.81098 * 20 19 9 22 22 C 1.38235 * 120.00410 * 0.39654 * 21 20 19 23 23 C 1.38233 * 119.99774 * 359.86291 * 22 21 20 24 24 C 1.38240 * 119.99652 * 98.11895 * 19 9 7 25 25 H 0.96989 * 120.00282 * 359.97438 * 1 2 3 26 26 H 1.08002 * 128.02062 * 0.02562 * 13 12 11 27 27 H 1.08993 * 109.46751 * 210.31084 * 15 14 13 28 28 H 1.09003 * 109.46994 * 330.30879 * 15 14 13 29 29 H 1.07991 * 119.99738 * 0.02562 * 20 19 9 30 30 H 1.08006 * 119.99605 * 180.23138 * 21 20 19 31 31 H 1.07993 * 120.00232 * 179.83142 * 22 21 20 32 32 H 1.08005 * 120.00340 * 179.97438 * 23 22 21 33 33 H 1.07993 * 120.00165 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5995 1.9872 1.3950 5 1 3.4914 1.4722 -0.8005 6 1 1.3987 2.6803 -0.5946 7 6 2.0046 -1.1939 -0.0005 8 1 1.4704 -2.1260 -0.1116 9 6 3.5038 -1.1985 0.1538 10 1 3.8574 -0.1773 0.2956 11 8 3.8634 -1.9891 1.2886 12 6 3.9487 -1.3499 2.4827 13 6 4.2811 -1.9272 3.7359 14 6 4.2322 -0.8860 4.5981 15 6 4.5042 -0.9297 6.0797 16 17 6.2548 -0.6190 6.3788 17 8 3.8893 0.1916 3.8776 18 7 3.7361 -0.0813 2.7097 19 6 4.1344 -1.7812 -1.0846 20 6 4.2226 -3.1525 -1.2356 21 6 4.7976 -3.6869 -2.3734 22 6 5.2919 -2.8502 -3.3565 23 6 5.2086 -1.4789 -3.2030 24 6 4.6300 -0.9444 -2.0670 25 1 -0.4850 0.8399 0.0004 26 1 4.5198 -2.9583 3.9510 27 1 3.9089 -0.1667 6.5810 28 1 4.2379 -1.9124 6.4691 29 1 3.8391 -3.8061 -0.4663 30 1 4.8632 -4.7583 -2.4930 31 1 5.7436 -3.2677 -4.2441 32 1 5.5951 -0.8251 -3.9709 33 1 4.5647 0.1269 -1.9472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222997861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:29 Heat of formation + Delta-G solvation = 45.181011 kcal Electronic energy + Delta-G solvation = -20683.249220 eV Core-core repulsion = 17317.950858 eV Total energy + Delta-G solvation = -3365.298362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.39900 -38.96245 -37.49975 -36.33045 -33.53228 -32.92762 -31.99232 -30.97878 -30.30796 -27.66579 -27.14376 -23.47737 -22.90971 -22.07489 -21.23561 -19.69151 -17.70766 -17.34950 -17.09581 -16.47409 -16.00647 -14.95772 -14.70414 -14.37731 -14.25627 -14.11090 -13.84167 -13.52779 -13.10402 -12.88983 -12.84020 -12.76160 -12.18765 -11.85753 -11.32122 -11.04549 -10.91115 -10.70840 -10.61709 -10.28820 -10.21152 -9.88432 -9.60947 -9.27922 -8.83060 -8.40906 -8.34747 -7.95860 -6.38189 -4.45149 1.27508 1.94333 1.97853 2.44183 2.94078 3.20255 3.20943 3.30951 3.37637 3.65175 4.23559 4.40244 4.55036 4.80246 4.97211 5.03861 5.22206 5.37892 5.42405 5.45950 5.61684 5.74071 5.88653 6.04594 6.08778 6.22613 6.31511 6.56051 6.64170 7.00710 7.05148 7.21076 7.29637 7.57911 7.96263 8.23099 8.70373 8.83023 9.22195 10.71837 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014732 B = 0.005411 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.162908 B = 5173.807604 C = 6311.791435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.093 3.907 3 Si 0.864 3.136 4 H -0.245 1.245 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.529 4.529 8 H 0.084 0.916 9 C 0.209 3.791 10 H 0.055 0.945 11 O -0.295 6.295 12 C 0.241 3.759 13 C -0.211 4.211 14 C -0.061 4.061 15 C 0.055 3.945 16 Cl -0.165 7.165 17 O 0.104 5.896 18 N -0.394 5.394 19 C -0.037 4.037 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.121 4.121 24 C -0.124 4.124 25 H 0.271 0.729 26 H 0.174 0.826 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.185 -2.975 7.408 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.114 4.114 3 Si 0.690 3.310 4 H -0.169 1.169 5 H -0.191 1.191 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.156 3.844 10 H 0.072 0.928 11 O -0.201 6.201 12 C 0.043 3.957 13 C -0.233 4.233 14 C -0.126 4.126 15 C -0.008 4.008 16 Cl -0.139 7.139 17 O 0.042 5.958 18 N -0.121 5.121 19 C -0.038 4.038 20 C -0.121 4.121 21 C -0.142 4.142 22 C -0.161 4.161 23 C -0.139 4.139 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.191 0.809 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.832 -2.125 6.548 12.002 hybrid contribution 0.314 0.222 -0.017 0.385 sum 10.145 -1.902 6.531 12.215 Atomic orbital electron populations 1.69889 1.06478 1.27941 1.46186 1.25053 0.94798 0.99290 0.92298 0.87030 0.79864 0.83147 0.80933 1.16897 1.19126 1.21199 1.21079 0.87989 0.95726 1.51720 0.89826 1.19452 0.95734 0.90416 0.78788 0.92760 1.86264 1.83507 1.37965 1.12368 1.21914 0.96536 0.87820 0.89439 1.21798 1.10364 1.01384 0.89750 1.23728 1.05074 0.88010 0.95741 1.22435 0.83603 1.06638 0.88154 1.98754 1.21881 1.97067 1.96151 1.84860 1.65203 1.32493 1.13256 1.74261 1.25862 1.16685 0.95316 1.19983 0.93613 0.93816 0.96346 1.20946 0.98860 0.94865 0.97474 1.21053 0.99630 0.99109 0.94421 1.20934 1.02325 0.93667 0.99142 1.20950 1.00432 0.95147 0.97395 1.20975 0.99062 0.99708 0.94461 0.91882 0.80877 0.86449 0.85613 0.86014 0.86768 0.86943 0.86730 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.09 2.66 5.47 -17.82 -0.10 2.56 16 3 Si 0.86 21.57 26.26 -169.99 -4.46 17.10 16 4 H -0.25 -6.09 6.92 56.52 0.39 -5.69 16 5 H -0.27 -6.32 5.56 56.52 0.31 -6.00 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.53 -14.93 9.17 -34.44 -0.32 -15.25 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.21 5.17 2.18 -29.03 -0.06 5.11 16 10 H 0.05 1.38 3.88 -51.93 -0.20 1.18 16 11 O -0.29 -6.89 9.08 -18.82 -0.17 -7.07 16 12 C 0.24 5.15 7.95 -16.66 -0.13 5.02 16 13 C -0.21 -3.41 11.10 -39.23 -0.44 -3.84 16 14 C -0.06 -0.89 6.86 -35.36 -0.24 -1.13 16 15 C 0.06 0.51 7.22 36.01 0.26 0.77 16 16 Cl -0.16 -1.78 29.13 -51.86 -1.51 -3.29 16 17 O 0.10 1.93 11.19 17.08 0.19 2.12 16 18 N -0.39 -8.76 10.22 30.38 0.31 -8.45 16 19 C -0.04 -0.83 4.97 -104.62 -0.52 -1.35 16 20 C -0.10 -2.07 9.36 -39.58 -0.37 -2.44 16 21 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 22 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 23 C -0.12 -2.08 10.05 -39.58 -0.40 -2.48 16 24 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 26 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.12 2.40 7.71 -52.49 -0.40 2.00 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.12 2.39 6.80 -52.49 -0.36 2.03 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -32.13 306.78 -6.90 -39.03 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.16 Total: 2.26 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.49 Total: -21.12 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 1.08 Total: -33.66 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.02 Total: -4.94 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.46 Total: 17.10 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.51 Total: -3.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.13 -6.90 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222997861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.207 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds