Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48500 * 109.47520 * 94.86849 * 3 2 1 5 5 H 1.48502 * 109.47296 * 214.87128 * 3 2 1 6 6 H 1.48508 * 109.47004 * 334.87176 * 3 2 1 7 7 C 1.37871 * 120.00430 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00254 * 6.79683 * 7 2 1 9 9 C 1.50708 * 120.00183 * 186.78907 * 7 2 1 10 10 H 1.08998 * 109.46572 * 2.44515 * 9 7 2 11 11 O 1.42904 * 109.46916 * 122.43701 * 9 7 2 12 12 C 1.35706 * 117.00260 * 270.00821 * 11 9 7 13 13 C 1.41927 * 126.88003 * 179.71479 * 12 11 9 14 14 C 1.35272 * 103.95993 * 179.90383 * 13 12 11 15 15 C 1.50707 * 126.70637 * 180.10666 * 14 13 12 16 16 Cl 1.80290 * 109.47173 * 90.30825 * 15 14 13 17 17 O 1.34078 * 106.58192 * 0.34474 * 14 13 12 18 18 N 1.20911 * 111.71863 * 359.76456 * 17 14 13 19 19 C 1.50694 * 109.47322 * 242.43974 * 9 7 2 20 20 C 1.38237 * 120.00120 * 277.84248 * 19 9 7 21 21 C 1.38233 * 119.99689 * 179.81098 * 20 19 9 22 22 C 1.38235 * 120.00410 * 0.39654 * 21 20 19 23 23 C 1.38233 * 119.99774 * 359.86291 * 22 21 20 24 24 C 1.38240 * 119.99652 * 98.11895 * 19 9 7 25 25 H 0.96989 * 120.00282 * 359.97438 * 1 2 3 26 26 H 1.08002 * 128.02062 * 0.02562 * 13 12 11 27 27 H 1.08993 * 109.46751 * 210.31084 * 15 14 13 28 28 H 1.09003 * 109.46994 * 330.30879 * 15 14 13 29 29 H 1.07991 * 119.99738 * 0.02562 * 20 19 9 30 30 H 1.08006 * 119.99605 * 180.23138 * 21 20 19 31 31 H 1.07993 * 120.00232 * 179.83142 * 22 21 20 32 32 H 1.08005 * 120.00340 * 179.97438 * 23 22 21 33 33 H 1.07993 * 120.00165 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5995 1.9872 1.3950 5 1 3.4914 1.4722 -0.8005 6 1 1.3987 2.6803 -0.5946 7 6 2.0046 -1.1939 -0.0005 8 1 1.4704 -2.1260 -0.1116 9 6 3.5038 -1.1985 0.1538 10 1 3.8574 -0.1773 0.2956 11 8 3.8634 -1.9891 1.2886 12 6 3.9487 -1.3499 2.4827 13 6 4.2811 -1.9272 3.7359 14 6 4.2322 -0.8860 4.5981 15 6 4.5042 -0.9297 6.0797 16 17 6.2548 -0.6190 6.3788 17 8 3.8893 0.1916 3.8776 18 7 3.7361 -0.0813 2.7097 19 6 4.1344 -1.7812 -1.0846 20 6 4.2226 -3.1525 -1.2356 21 6 4.7976 -3.6869 -2.3734 22 6 5.2919 -2.8502 -3.3565 23 6 5.2086 -1.4789 -3.2030 24 6 4.6300 -0.9444 -2.0670 25 1 -0.4850 0.8399 0.0004 26 1 4.5198 -2.9583 3.9510 27 1 3.9089 -0.1667 6.5810 28 1 4.2379 -1.9124 6.4691 29 1 3.8391 -3.8061 -0.4663 30 1 4.8632 -4.7583 -2.4930 31 1 5.7436 -3.2677 -4.2441 32 1 5.5951 -0.8251 -3.9709 33 1 4.5647 0.1269 -1.9472 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222997861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = 24.038108 kcal Electronic energy + Delta-G solvation = -20684.166045 eV Core-core repulsion = 17317.950858 eV Total energy + Delta-G solvation = -3366.215188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.90521 -40.55760 -39.10639 -37.17851 -35.30926 -34.46372 -33.56596 -32.58186 -31.73737 -29.34143 -28.40487 -25.30869 -24.43130 -23.52232 -22.68360 -21.28153 -19.56602 -18.87082 -18.76374 -17.96495 -17.56447 -16.67045 -16.22156 -15.64088 -15.44142 -15.36209 -15.09986 -14.98101 -14.89061 -14.67590 -14.27009 -14.06683 -13.79927 -13.51811 -13.10339 -12.78364 -12.23277 -12.07816 -11.94238 -11.79739 -11.71468 -11.50228 -11.37429 -10.95194 -10.59874 -10.02207 -9.78781 -9.54770 -8.57344 -6.67973 0.15172 0.48302 0.54011 1.16588 1.25079 1.29072 1.33619 1.60410 1.95130 2.15369 2.23939 2.85457 2.98493 3.34274 3.64760 3.89074 3.98251 4.10115 4.17005 4.24478 4.29774 4.36146 4.43640 4.61425 4.74007 4.75305 4.88798 5.08021 5.18286 5.20194 5.59872 5.62636 5.76497 5.90004 6.16158 6.31709 6.47094 7.03721 7.39604 8.57365 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014732 B = 0.005411 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.162908 B = 5173.807604 C = 6311.791435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.916 3.084 4 H -0.246 1.246 5 H -0.252 1.252 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.039 0.961 9 C 0.221 3.779 10 H 0.044 0.956 11 O -0.304 6.304 12 C 0.199 3.801 13 C -0.212 4.212 14 C -0.038 4.038 15 C 0.059 3.941 16 Cl -0.172 7.172 17 O 0.098 5.902 18 N -0.434 5.434 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.146 4.146 25 H 0.274 0.726 26 H 0.207 0.793 27 H 0.144 0.856 28 H 0.165 0.835 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.580 -3.619 7.452 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.155 4.155 3 Si 0.739 3.261 4 H -0.170 1.170 5 H -0.176 1.176 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.167 3.833 10 H 0.061 0.939 11 O -0.211 6.211 12 C 0.003 3.997 13 C -0.233 4.233 14 C -0.103 4.103 15 C -0.003 4.003 16 Cl -0.146 7.146 17 O 0.036 5.964 18 N -0.161 5.161 19 C -0.076 4.076 20 C -0.140 4.140 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.164 4.164 25 H 0.084 0.916 26 H 0.224 0.776 27 H 0.162 0.838 28 H 0.183 0.817 29 H 0.128 0.872 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.245 -2.771 6.601 14.185 hybrid contribution -0.339 0.280 0.055 0.443 sum 11.906 -2.491 6.657 13.867 Atomic orbital electron populations 1.69994 1.07922 1.28842 1.48724 1.25735 0.95386 1.02335 0.92010 0.86212 0.79335 0.79457 0.81073 1.16963 1.17643 1.20258 1.21157 0.90309 0.93982 1.51729 0.94248 1.19178 0.93473 0.90436 0.80215 0.93867 1.86160 1.83998 1.37837 1.13074 1.22570 0.98364 0.88700 0.90098 1.22209 1.10268 1.03352 0.87512 1.24615 1.02016 0.85977 0.97655 1.22910 0.83103 1.10005 0.84328 1.98764 1.22714 1.97202 1.95889 1.84775 1.65206 1.33899 1.12544 1.74229 1.27069 1.17573 0.97207 1.19993 0.96333 0.95277 0.96008 1.21008 1.00074 0.93937 0.98954 1.21459 0.97857 1.01246 0.93034 1.21486 1.00241 0.92976 0.99879 1.21373 0.98876 0.96549 0.96627 1.21093 1.00425 0.99216 0.95645 0.91640 0.77614 0.83819 0.81707 0.87153 0.83214 0.82321 0.83182 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.57 13.96 21.45 0.30 -57.27 16 2 C 0.05 2.87 5.47 84.65 0.46 3.34 16 3 Si 0.92 46.15 26.26 68.60 1.80 47.96 16 4 H -0.25 -12.29 6.92 99.48 0.69 -11.60 16 5 H -0.25 -11.96 5.56 99.48 0.55 -11.41 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.54 -32.09 9.17 25.60 0.23 -31.86 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 9 C 0.22 11.44 2.18 29.10 0.06 11.51 16 10 H 0.04 2.29 3.88 -2.39 -0.01 2.28 16 11 O -0.30 -14.89 9.08 -90.27 -0.82 -15.71 16 12 C 0.20 8.77 7.95 85.79 0.68 9.45 16 13 C -0.21 -6.64 11.10 22.50 0.25 -6.39 16 14 C -0.04 -1.05 6.86 25.00 0.17 -0.87 16 15 C 0.06 0.89 7.22 71.24 0.51 1.40 16 16 Cl -0.17 -3.26 29.13 -2.72 -0.08 -3.34 16 17 O 0.10 3.63 11.19 71.28 0.80 4.43 16 18 N -0.43 -19.75 10.22 -172.60 -1.76 -21.52 16 19 C -0.08 -3.47 4.97 -19.87 -0.10 -3.57 16 20 C -0.12 -4.91 9.36 22.27 0.21 -4.71 16 21 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 22 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 23 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 24 C -0.15 -5.93 9.67 22.27 0.22 -5.72 16 25 H 0.27 15.99 8.31 -92.72 -0.77 15.22 16 26 H 0.21 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.17 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.11 4.56 7.71 -2.91 -0.02 4.54 16 30 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.11 4.44 6.80 -2.91 -0.02 4.42 16 Total: -1.00 -76.60 306.78 4.58 -72.02 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.97 Total: 11.11 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.37 Total: -37.67 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.46 Total: -78.79 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.02 Total: -11.28 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.80 Total: 47.96 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.08 Total: -3.34 kcal Total: -76.60 4.58 -72.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222997861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.054 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds