Wall clock time and date at job start Tue Mar 31 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48501 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47106 * 300.00173 * 3 2 1 6 6 H 1.48495 * 109.46849 * 60.00309 * 3 2 1 7 7 C 1.37883 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46619 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47116 * 60.00352 * 9 7 2 12 12 C 1.35708 * 117.00130 * 89.99854 * 11 9 7 13 13 C 1.41929 * 126.88320 * 180.02562 * 12 11 9 14 14 C 1.35271 * 103.96289 * 179.97438 * 13 12 11 15 15 C 1.50704 * 126.70971 * 179.97438 * 14 13 12 16 16 Cl 1.80294 * 109.47098 * 89.99845 * 15 14 13 17 17 O 1.34085 * 106.58456 * 359.97438 * 14 13 12 18 18 N 1.20917 * 111.71389 * 359.72825 * 17 14 13 19 19 C 1.50696 * 109.47236 * 300.00085 * 9 7 2 20 20 C 1.38230 * 120.00309 * 265.00232 * 19 9 7 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 H 0.97001 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.07998 * 128.01684 * 359.97438 * 13 12 11 27 27 H 1.08998 * 109.47311 * 210.00313 * 15 14 13 28 28 H 1.09005 * 109.46773 * 330.00121 * 15 14 13 29 29 H 1.08000 * 120.00376 * 359.97438 * 20 19 9 30 30 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 31 31 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 32 32 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 33 33 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9812 -3.1306 -2.2749 13 6 0.3598 -3.3094 -3.5384 14 6 1.3162 -3.8984 -4.2921 15 6 1.1955 -4.3171 -5.7348 16 17 1.7027 -2.9542 -6.8006 17 8 2.3928 -4.0368 -3.5049 18 7 2.1935 -3.6024 -2.3941 19 6 0.3850 -2.5793 1.2302 20 6 0.8483 -3.2264 2.3604 21 6 0.0541 -3.2994 3.4895 22 6 -1.2031 -2.7247 3.4886 23 6 -1.6668 -2.0784 2.3580 24 6 -0.8723 -2.0046 1.2292 25 1 -0.4850 0.8401 0.0004 26 1 -0.6440 -3.0381 -3.8302 27 1 1.8366 -5.1794 -5.9177 28 1 0.1603 -4.5815 -5.9509 29 1 1.8307 -3.6750 2.3614 30 1 0.4143 -3.8088 4.3711 31 1 -1.8238 -2.7821 4.3706 32 1 -2.6493 -1.6297 2.3571 33 1 -1.2339 -1.4982 0.3465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222997862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:31 Heat of formation + Delta-G solvation = 50.953937 kcal Electronic energy + Delta-G solvation = -20769.750659 eV Core-core repulsion = 17404.702630 eV Total energy + Delta-G solvation = -3365.048030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.24113 -38.57669 -37.12417 -36.23774 -33.52225 -32.89081 -31.61617 -30.49645 -29.72267 -27.44088 -26.89226 -23.45582 -22.78561 -21.58940 -20.87973 -19.84621 -17.45603 -17.21209 -16.72524 -16.04336 -15.51227 -14.94652 -14.57697 -14.20172 -14.13715 -13.86052 -13.54283 -13.44612 -13.07853 -12.72097 -12.43031 -11.91472 -11.83590 -11.61497 -11.07497 -10.87995 -10.77859 -10.64873 -10.55634 -10.32222 -10.16697 -9.59602 -9.44670 -9.14619 -8.89658 -8.09575 -7.85050 -7.58981 -6.13850 -4.47014 1.37437 2.35208 2.51720 2.54962 3.11526 3.17360 3.25544 3.30312 3.37084 3.93922 4.22626 4.64802 4.87057 4.91171 5.03388 5.10750 5.37052 5.60850 5.73979 5.84037 5.91128 6.00220 6.19441 6.30321 6.51088 6.64283 6.77044 6.97651 7.18848 7.39855 7.51479 7.70542 7.83786 7.91217 8.16312 8.33271 8.71837 8.97178 9.28865 10.70587 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.005039 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.127441 B = 5555.723308 C = 6561.529285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.081 3.919 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.242 3.758 10 H 0.041 0.959 11 O -0.268 6.268 12 C 0.245 3.755 13 C -0.212 4.212 14 C -0.065 4.065 15 C 0.056 3.944 16 Cl -0.164 7.164 17 O 0.096 5.904 18 N -0.405 5.405 19 C -0.046 4.046 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.047 4.047 25 H 0.266 0.734 26 H 0.171 0.829 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -7.692 -6.871 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.126 4.126 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.188 3.812 10 H 0.060 0.940 11 O -0.172 6.172 12 C 0.047 3.953 13 C -0.234 4.234 14 C -0.129 4.129 15 C -0.008 4.008 16 Cl -0.137 7.137 17 O 0.036 5.964 18 N -0.136 5.136 19 C -0.047 4.047 20 C -0.142 4.142 21 C -0.166 4.166 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.066 4.066 25 H 0.076 0.924 26 H 0.189 0.811 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.574 -7.425 -6.038 9.699 hybrid contribution -0.111 1.405 -0.017 1.409 sum -1.685 -6.020 -6.055 8.703 Atomic orbital electron populations 1.69811 1.05926 1.26530 1.46023 1.25079 0.94928 0.99687 0.92878 0.86425 0.80384 0.82801 0.77889 1.19423 1.20537 1.20538 1.21417 0.93406 0.89919 1.52237 0.91298 1.19004 0.86991 0.96793 0.78382 0.94046 1.86475 1.41001 1.72531 1.17218 1.22105 0.88200 0.94107 0.90881 1.21821 1.02558 1.07420 0.91634 1.23676 0.88905 1.05191 0.95137 1.22399 1.04833 0.90755 0.82805 1.98760 1.93066 1.53211 1.68713 1.84819 1.34349 1.61587 1.15677 1.74168 1.18161 1.21998 0.99301 1.19800 0.94399 0.95422 0.95092 1.20766 0.99113 1.00726 0.93591 1.20719 0.95295 1.02898 0.97670 1.20863 0.96356 1.00963 0.97878 1.21146 0.99709 1.01530 0.94566 1.21844 0.92743 0.92459 0.99546 0.92390 0.81149 0.86681 0.85838 0.87547 0.87701 0.88016 0.87780 0.81995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.36 8.52 55.43 0.47 -21.89 16 2 C 0.08 2.15 5.24 -17.82 -0.09 2.06 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.49 8.89 -34.44 -0.31 -14.80 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.24 6.11 2.49 -29.03 -0.07 6.04 16 10 H 0.04 1.04 7.25 -51.93 -0.38 0.67 16 11 O -0.27 -6.66 8.39 -18.83 -0.16 -6.82 16 12 C 0.24 5.39 7.95 -16.65 -0.13 5.26 16 13 C -0.21 -3.65 11.10 -39.23 -0.44 -4.08 16 14 C -0.06 -0.96 6.86 -35.36 -0.24 -1.20 16 15 C 0.06 0.53 7.22 36.01 0.26 0.79 16 16 Cl -0.16 -1.94 29.13 -51.86 -1.51 -3.45 16 17 O 0.10 1.73 11.19 17.06 0.19 1.92 16 18 N -0.40 -8.78 11.09 30.39 0.34 -8.44 16 19 C -0.05 -1.12 4.80 -104.63 -0.50 -1.62 16 20 C -0.12 -2.66 9.68 -39.59 -0.38 -3.05 16 21 C -0.15 -2.84 10.05 -39.58 -0.40 -3.23 16 22 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 24 C -0.05 -1.10 7.46 -39.58 -0.30 -1.40 16 25 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 27 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 33 H 0.16 4.08 5.52 -52.49 -0.29 3.79 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -29.60 306.47 -7.64 -37.24 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.17 Total: 2.67 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.40 Total: -21.81 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.81 Total: -30.33 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: 0.03 Total: -4.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.51 Total: -3.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.60 -7.64 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222997862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.190 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds