Wall clock time and date at job start Tue Mar 31 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48501 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47106 * 300.00173 * 3 2 1 6 6 H 1.48495 * 109.46849 * 60.00309 * 3 2 1 7 7 C 1.37883 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46619 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47116 * 60.00352 * 9 7 2 12 12 C 1.35708 * 117.00130 * 89.99854 * 11 9 7 13 13 C 1.41929 * 126.88320 * 180.02562 * 12 11 9 14 14 C 1.35271 * 103.96289 * 179.97438 * 13 12 11 15 15 C 1.50704 * 126.70971 * 179.97438 * 14 13 12 16 16 Cl 1.80294 * 109.47098 * 89.99845 * 15 14 13 17 17 O 1.34085 * 106.58456 * 359.97438 * 14 13 12 18 18 N 1.20917 * 111.71389 * 359.72825 * 17 14 13 19 19 C 1.50696 * 109.47236 * 300.00085 * 9 7 2 20 20 C 1.38230 * 120.00309 * 265.00232 * 19 9 7 21 21 C 1.38235 * 120.00326 * 179.97438 * 20 19 9 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38240 * 120.00061 * 0.07178 * 22 21 20 24 24 C 1.38234 * 120.00081 * 359.88514 * 23 22 21 25 25 H 0.97001 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.07998 * 128.01684 * 359.97438 * 13 12 11 27 27 H 1.08998 * 109.47311 * 210.00313 * 15 14 13 28 28 H 1.09005 * 109.46773 * 330.00121 * 15 14 13 29 29 H 1.08000 * 120.00376 * 359.97438 * 20 19 9 30 30 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 31 31 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 32 32 H 1.08005 * 120.00107 * 179.97438 * 23 22 21 33 33 H 1.07999 * 120.00147 * 180.10835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9812 -3.1306 -2.2749 13 6 0.3598 -3.3094 -3.5384 14 6 1.3162 -3.8984 -4.2921 15 6 1.1955 -4.3171 -5.7348 16 17 1.7027 -2.9542 -6.8006 17 8 2.3928 -4.0368 -3.5049 18 7 2.1935 -3.6024 -2.3941 19 6 0.3850 -2.5793 1.2302 20 6 0.8483 -3.2264 2.3604 21 6 0.0541 -3.2994 3.4895 22 6 -1.2031 -2.7247 3.4886 23 6 -1.6668 -2.0784 2.3580 24 6 -0.8723 -2.0046 1.2292 25 1 -0.4850 0.8401 0.0004 26 1 -0.6440 -3.0381 -3.8302 27 1 1.8366 -5.1794 -5.9177 28 1 0.1603 -4.5815 -5.9509 29 1 1.8307 -3.6750 2.3614 30 1 0.4143 -3.8088 4.3711 31 1 -1.8238 -2.7821 4.3706 32 1 -2.6493 -1.6297 2.3571 33 1 -1.2339 -1.4982 0.3465 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222997862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:30 Heat of formation + Delta-G solvation = 33.726539 kcal Electronic energy + Delta-G solvation = -20770.497695 eV Core-core repulsion = 17404.702630 eV Total energy + Delta-G solvation = -3365.795066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.77641 -40.28909 -38.81331 -37.14905 -35.29103 -34.31031 -33.20759 -32.19499 -31.35871 -29.00979 -28.31094 -25.30375 -24.32624 -23.20613 -22.44320 -21.50611 -19.02035 -18.74618 -18.45042 -17.63465 -17.21449 -16.84112 -15.94814 -15.51953 -15.35331 -15.28899 -15.00044 -14.95603 -14.67229 -14.08933 -13.99241 -13.69476 -13.59579 -13.31704 -12.91505 -12.60295 -12.43656 -12.05774 -11.91179 -11.70134 -11.41311 -11.32793 -11.25420 -10.86622 -10.51563 -9.77833 -9.50257 -9.30636 -8.08841 -6.52308 0.21003 0.71007 0.89415 1.29772 1.32711 1.38271 1.43210 1.69374 2.14139 2.28783 2.40029 3.05129 3.23180 3.45638 3.77694 4.02674 4.17654 4.25126 4.32357 4.39516 4.51181 4.53053 4.61737 4.77133 4.90209 5.01646 5.10904 5.34424 5.49724 5.58293 5.78810 5.84911 6.00720 6.21972 6.37343 6.49394 6.82445 7.25414 7.51328 8.71358 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.005039 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.127441 B = 5555.723308 C = 6561.529285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.045 3.955 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.562 4.562 8 H 0.048 0.952 9 C 0.248 3.752 10 H 0.023 0.977 11 O -0.286 6.286 12 C 0.202 3.798 13 C -0.223 4.223 14 C -0.037 4.037 15 C 0.061 3.939 16 Cl -0.179 7.179 17 O 0.098 5.902 18 N -0.436 5.436 19 C -0.075 4.075 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.155 4.155 24 C -0.067 4.067 25 H 0.267 0.733 26 H 0.194 0.806 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -8.319 -6.837 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.161 4.161 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.598 4.598 8 H 0.066 0.934 9 C 0.195 3.805 10 H 0.041 0.959 11 O -0.192 6.192 12 C 0.006 3.994 13 C -0.245 4.245 14 C -0.102 4.102 15 C -0.002 4.002 16 Cl -0.152 7.152 17 O 0.037 5.963 18 N -0.166 5.166 19 C -0.076 4.076 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.173 4.173 24 C -0.086 4.086 25 H 0.077 0.923 26 H 0.212 0.788 27 H 0.167 0.833 28 H 0.181 0.819 29 H 0.129 0.871 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.607 -8.063 -6.009 10.388 hybrid contribution 0.197 1.465 -0.100 1.481 sum -2.410 -6.598 -6.108 9.309 Atomic orbital electron populations 1.69982 1.06356 1.26951 1.45714 1.25654 0.95829 1.01875 0.92693 0.85629 0.78934 0.79708 0.78171 1.20006 1.20084 1.19599 1.21471 0.92629 0.91652 1.54065 0.93393 1.18808 0.87144 0.95157 0.79434 0.95898 1.86376 1.41151 1.73729 1.17935 1.22711 0.89381 0.95648 0.91685 1.22150 1.04172 1.08280 0.89890 1.24512 0.86618 1.02363 0.96701 1.22924 1.08178 0.90498 0.78593 1.98770 1.93321 1.54402 1.68718 1.84749 1.35440 1.60992 1.15148 1.74156 1.18642 1.22685 1.01098 1.19885 0.94996 0.97367 0.95333 1.20995 0.99948 1.00964 0.93938 1.21157 0.94989 1.01920 0.97789 1.21321 0.96465 0.98937 0.98461 1.21423 1.00331 1.01456 0.94132 1.21654 0.93251 0.93620 1.00073 0.92292 0.78839 0.83305 0.81919 0.87101 0.83918 0.83826 0.85519 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.42 8.52 21.45 0.18 -46.24 16 2 C 0.04 2.46 5.24 84.66 0.44 2.90 16 3 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.56 -32.14 8.89 25.60 0.23 -31.91 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.25 13.32 2.49 29.10 0.07 13.39 16 10 H 0.02 1.25 7.25 -2.38 -0.02 1.23 16 11 O -0.29 -15.05 8.39 -90.28 -0.76 -15.81 16 12 C 0.20 9.30 7.95 85.79 0.68 9.99 16 13 C -0.22 -7.63 11.10 22.50 0.25 -7.38 16 14 C -0.04 -1.05 6.86 25.00 0.17 -0.88 16 15 C 0.06 0.95 7.22 71.24 0.51 1.47 16 16 Cl -0.18 -3.83 29.13 -2.72 -0.08 -3.91 16 17 O 0.10 3.54 11.19 71.21 0.80 4.34 16 18 N -0.44 -19.69 11.09 -172.57 -1.91 -21.60 16 19 C -0.08 -3.74 4.80 -19.87 -0.10 -3.83 16 20 C -0.14 -6.07 9.68 22.27 0.22 -5.86 16 21 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 22 C -0.13 -4.65 10.05 22.27 0.22 -4.42 16 23 C -0.16 -6.16 10.05 22.27 0.22 -5.94 16 24 C -0.07 -3.20 7.46 22.27 0.17 -3.04 16 25 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.19 5.48 8.06 -2.91 -0.02 5.46 16 27 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.16 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.14 7.23 5.52 -2.91 -0.02 7.21 16 Total: -1.00 -68.43 306.47 4.71 -63.72 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.14 Total: 13.81 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 3.32 Total: -40.35 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -1.73 Total: -67.84 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.04 Total: -11.47 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -3.83 SS G_CDS: -0.08 Total: -3.91 kcal Total: -68.43 4.71 -63.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222997862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.446 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds