Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48504 * 109.46711 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47066 * 299.99355 * 3 2 1 6 6 H 1.48499 * 109.47380 * 59.99541 * 3 2 1 7 7 C 1.37874 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99847 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00043 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46517 * 299.99718 * 9 7 2 11 11 C 1.53003 * 109.47067 * 59.99458 * 9 7 2 12 12 Cl 1.80303 * 109.46820 * 185.00186 * 11 9 7 13 13 O 1.42891 * 109.46996 * 179.97438 * 9 7 2 14 14 C 1.35796 * 117.00220 * 141.62776 * 13 9 7 15 15 C 1.38583 * 120.13121 * 5.64050 * 14 13 9 16 16 C 1.38168 * 120.08625 * 180.02562 * 15 14 13 17 17 C 1.38459 * 120.35671 * 0.02562 * 16 15 14 18 18 C 1.37902 * 120.27135 * 359.97267 * 17 16 15 19 19 C 1.39576 * 119.91103 * 359.77294 * 18 17 16 20 20 C 1.47717 * 120.17903 * 180.25331 * 19 18 17 21 21 C 1.36909 * 126.93333 * 309.96042 * 20 19 18 22 22 C 1.40942 * 103.88094 * 179.90966 * 21 20 19 23 23 N 1.30299 * 106.60355 * 0.35549 * 22 21 20 24 24 O 1.20890 * 111.94077 * 359.77223 * 23 22 21 25 25 H 0.97005 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47027 * 305.00019 * 11 9 7 27 27 H 1.08993 * 109.47411 * 65.00160 * 11 9 7 28 28 H 1.08001 * 119.95735 * 0.02562 * 15 14 13 29 29 H 1.07994 * 119.82001 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.85982 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.04511 * 180.02562 * 18 17 16 32 32 H 1.08003 * 128.05670 * 0.02562 * 21 20 19 33 33 H 1.08002 * 126.69676 * 180.12935 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1767 13 8 2.1796 -3.5852 0.0005 14 6 1.8593 -4.6703 0.7516 15 6 0.6263 -4.7418 1.3802 16 6 0.3015 -5.8460 2.1446 17 6 1.2031 -6.8869 2.2888 18 6 2.4341 -6.8311 1.6698 19 6 2.7718 -5.7234 0.8907 20 6 4.0866 -5.6600 0.2204 21 6 5.3122 -5.8768 0.7909 22 6 6.2176 -5.6961 -0.2740 23 7 5.5042 -5.3976 -1.3227 24 8 4.3218 -5.3719 -1.0722 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2757 -1.7048 -1.2952 27 1 1.0036 -2.6123 -2.1365 28 1 -0.0817 -3.9334 1.2724 29 1 -0.6607 -5.8974 2.6322 30 1 0.9411 -7.7460 2.8886 31 1 3.1344 -7.6452 1.7845 32 1 5.5334 -6.1294 1.8174 33 1 7.2931 -5.7839 -0.2286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225357439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = 38.951093 kcal Electronic energy + Delta-G solvation = -21077.644637 eV Core-core repulsion = 17712.076125 eV Total energy + Delta-G solvation = -3365.568512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.45395 -39.60883 -37.06080 -34.89967 -33.62157 -33.52537 -32.61852 -30.03696 -29.63726 -28.48146 -25.38376 -23.53599 -23.14574 -22.56073 -20.88452 -20.46707 -18.19418 -17.11879 -16.95600 -16.71915 -15.43943 -15.28960 -14.77613 -14.55460 -14.36951 -14.02145 -13.38164 -13.13504 -12.97541 -12.81005 -12.33789 -12.07855 -11.70943 -11.50705 -11.21360 -11.12184 -11.01121 -10.80808 -10.75712 -10.31776 -10.16870 -9.71287 -9.49678 -9.45399 -9.22353 -8.73032 -8.35140 -7.51308 -6.48374 -4.55813 1.18438 1.83841 2.07508 2.58875 3.08750 3.18778 3.24395 3.35026 3.42073 3.93864 4.12629 4.28074 4.60723 4.86509 4.88522 5.18640 5.31089 5.35044 5.50770 5.63729 5.77977 5.83119 5.92741 6.16533 6.21937 6.22607 6.27713 6.54083 6.64771 6.79775 6.84014 7.05193 7.15058 7.50411 7.69731 8.19632 8.57020 8.61271 9.12276 10.58661 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.006628 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.656989 B = 4223.577601 C = 5374.365723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.204 3.796 10 H 0.054 0.946 11 C -0.034 4.034 12 Cl -0.241 7.241 13 O -0.299 6.299 14 C 0.191 3.809 15 C -0.196 4.196 16 C -0.066 4.066 17 C -0.177 4.177 18 C -0.055 4.055 19 C -0.095 4.095 20 C 0.055 3.945 21 C -0.241 4.241 22 C -0.015 4.015 23 N -0.374 5.374 24 O 0.116 5.884 25 H 0.272 0.728 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.169 0.831 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -10.292 4.055 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.150 3.850 10 H 0.071 0.929 11 C -0.097 4.097 12 Cl -0.215 7.215 13 O -0.211 6.211 14 C 0.141 3.859 15 C -0.215 4.215 16 C -0.084 4.084 17 C -0.195 4.195 18 C -0.073 4.073 19 C -0.097 4.097 20 C -0.009 4.009 21 C -0.263 4.263 22 C -0.193 4.193 23 N -0.076 5.076 24 O 0.048 5.952 25 H 0.082 0.918 26 H 0.153 0.847 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.186 0.814 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.338 -9.912 2.618 10.782 hybrid contribution 0.214 0.746 0.856 1.156 sum 3.552 -9.166 3.474 10.426 Atomic orbital electron populations 1.69793 1.05968 1.28061 1.48766 1.24963 0.95187 0.99822 0.93855 0.86142 0.80085 0.81636 0.78020 1.19274 1.20419 1.20438 1.21082 0.94409 0.87879 1.52581 0.90552 1.20636 0.87330 0.82765 0.94289 0.92869 1.25749 0.95368 0.86622 1.01942 1.98640 1.75779 1.48127 1.98934 1.86173 1.49147 1.24087 1.61716 1.19171 0.91230 0.87184 0.88268 1.21574 0.97126 1.01296 1.01467 1.21050 0.98783 0.92704 0.95864 1.20761 0.94456 1.00054 1.04264 1.20764 0.96531 0.95120 0.94902 1.16902 0.90659 0.96766 1.05405 1.22386 0.95224 0.99086 0.84240 1.22621 0.90607 1.11424 1.01636 1.24797 1.02081 1.03187 0.89197 1.73842 0.89838 1.18959 1.24940 1.85010 1.19876 1.64316 1.25979 0.91790 0.84714 0.90483 0.83652 0.86040 0.86017 0.85647 0.81371 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.68 11.29 55.43 0.63 -22.06 16 2 C 0.07 1.64 5.29 -17.82 -0.09 1.54 16 3 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.52 -13.51 8.89 -34.44 -0.31 -13.81 16 8 H 0.08 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.20 4.86 2.15 -27.88 -0.06 4.80 16 10 H 0.05 1.31 5.49 -51.93 -0.28 1.03 16 11 C -0.03 -0.77 6.17 37.16 0.23 -0.54 16 12 Cl -0.24 -4.84 25.68 -51.86 -1.33 -6.17 16 13 O -0.30 -6.86 9.06 -19.10 -0.17 -7.03 16 14 C 0.19 3.78 6.23 -38.78 -0.24 3.54 16 15 C -0.20 -3.57 7.20 -39.48 -0.28 -3.85 16 16 C -0.07 -0.97 10.03 -39.53 -0.40 -1.37 16 17 C -0.18 -2.33 10.03 -39.62 -0.40 -2.72 16 18 C -0.05 -0.76 9.72 -39.21 -0.38 -1.15 16 19 C -0.10 -1.66 5.83 -104.85 -0.61 -2.27 16 20 C 0.05 0.96 6.44 -36.19 -0.23 0.72 16 21 C -0.24 -3.50 11.06 -39.04 -0.43 -3.93 16 22 C -0.02 -0.23 12.15 -17.18 -0.21 -0.43 16 23 N -0.37 -6.80 12.05 30.44 0.37 -6.44 16 24 O 0.12 2.27 11.14 15.92 0.18 2.45 16 25 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 26 H 0.14 3.23 5.95 -51.93 -0.31 2.92 16 27 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.15 2.84 4.83 -52.49 -0.25 2.59 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.17 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -27.28 302.09 -7.15 -34.43 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.93 Total: 4.85 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.42 Total: -19.47 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.99 Total: -28.49 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.00 Total: -4.58 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -4.84 SS G_CDS: -1.33 Total: -6.17 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.28 -7.15 -34.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225357439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.382 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds