Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48504 * 109.46711 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47066 * 299.99355 * 3 2 1 6 6 H 1.48499 * 109.47380 * 59.99541 * 3 2 1 7 7 C 1.37874 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99847 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00043 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46517 * 299.99718 * 9 7 2 11 11 C 1.53003 * 109.47067 * 59.99458 * 9 7 2 12 12 Cl 1.80303 * 109.46820 * 185.00186 * 11 9 7 13 13 O 1.42891 * 109.46996 * 179.97438 * 9 7 2 14 14 C 1.35796 * 117.00220 * 141.62776 * 13 9 7 15 15 C 1.38583 * 120.13121 * 5.64050 * 14 13 9 16 16 C 1.38168 * 120.08625 * 180.02562 * 15 14 13 17 17 C 1.38459 * 120.35671 * 0.02562 * 16 15 14 18 18 C 1.37902 * 120.27135 * 359.97267 * 17 16 15 19 19 C 1.39576 * 119.91103 * 359.77294 * 18 17 16 20 20 C 1.47717 * 120.17903 * 180.25331 * 19 18 17 21 21 C 1.36909 * 126.93333 * 309.96042 * 20 19 18 22 22 C 1.40942 * 103.88094 * 179.90966 * 21 20 19 23 23 N 1.30299 * 106.60355 * 0.35549 * 22 21 20 24 24 O 1.20890 * 111.94077 * 359.77223 * 23 22 21 25 25 H 0.97005 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47027 * 305.00019 * 11 9 7 27 27 H 1.08993 * 109.47411 * 65.00160 * 11 9 7 28 28 H 1.08001 * 119.95735 * 0.02562 * 15 14 13 29 29 H 1.07994 * 119.82001 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.85982 * 179.97438 * 17 16 15 31 31 H 1.07998 * 120.04511 * 180.02562 * 18 17 16 32 32 H 1.08003 * 128.05670 * 0.02562 * 21 20 19 33 33 H 1.08002 * 126.69676 * 180.12935 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 6 0.3717 -2.5804 -1.2490 12 17 -0.6388 -4.0719 -1.1767 13 8 2.1796 -3.5852 0.0005 14 6 1.8593 -4.6703 0.7516 15 6 0.6263 -4.7418 1.3802 16 6 0.3015 -5.8460 2.1446 17 6 1.2031 -6.8869 2.2888 18 6 2.4341 -6.8311 1.6698 19 6 2.7718 -5.7234 0.8907 20 6 4.0866 -5.6600 0.2204 21 6 5.3122 -5.8768 0.7909 22 6 6.2176 -5.6961 -0.2740 23 7 5.5042 -5.3976 -1.3227 24 8 4.3218 -5.3719 -1.0722 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2757 -1.7048 -1.2952 27 1 1.0036 -2.6123 -2.1365 28 1 -0.0817 -3.9334 1.2724 29 1 -0.6607 -5.8974 2.6322 30 1 0.9411 -7.7460 2.8886 31 1 3.1344 -7.6452 1.7845 32 1 5.5334 -6.1294 1.8174 33 1 7.2931 -5.7839 -0.2286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225357439.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = 24.855605 kcal Electronic energy + Delta-G solvation = -21078.255863 eV Core-core repulsion = 17712.076125 eV Total energy + Delta-G solvation = -3366.179738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.68924 -41.02170 -38.50078 -36.61100 -35.39235 -34.82710 -33.88682 -31.66037 -30.96674 -29.86512 -27.31996 -24.83511 -24.40607 -23.96837 -22.12596 -21.99896 -19.59156 -18.71981 -18.36710 -18.21183 -17.00520 -16.59833 -16.25229 -16.14891 -15.69887 -15.41055 -14.94285 -14.44488 -14.29632 -14.14274 -13.93082 -13.66404 -13.30442 -13.08176 -12.79228 -12.65582 -12.41606 -12.35286 -12.24807 -11.93766 -11.45472 -11.40004 -11.19212 -10.97252 -10.74608 -10.59200 -9.58929 -8.89938 -8.40974 -6.56561 -0.05541 0.58891 0.82388 1.34239 1.39370 1.45493 1.51208 1.56820 2.19819 2.24413 2.64253 2.88752 2.94292 3.54049 3.65356 4.03583 4.12383 4.22348 4.24570 4.33419 4.42786 4.46221 4.60233 4.71045 4.75118 4.89524 5.04138 5.17728 5.21568 5.44381 5.48459 5.53985 5.61905 5.81898 5.95070 6.42917 6.78351 7.16020 7.31602 8.65466 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.013182 B = 0.006628 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.656989 B = 4223.577601 C = 5374.365723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.214 3.786 10 H 0.039 0.961 11 C -0.025 4.025 12 Cl -0.218 7.218 13 O -0.324 6.324 14 C 0.148 3.852 15 C -0.214 4.214 16 C -0.065 4.065 17 C -0.157 4.157 18 C -0.046 4.046 19 C -0.105 4.105 20 C 0.027 3.973 21 C -0.225 4.225 22 C -0.001 4.001 23 N -0.409 5.409 24 O 0.071 5.929 25 H 0.277 0.723 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.149 0.851 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.205 0.795 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -12.149 5.838 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.159 3.841 10 H 0.056 0.944 11 C -0.087 4.087 12 Cl -0.192 7.192 13 O -0.238 6.238 14 C 0.100 3.900 15 C -0.233 4.233 16 C -0.084 4.084 17 C -0.175 4.175 18 C -0.064 4.064 19 C -0.107 4.107 20 C -0.037 4.037 21 C -0.246 4.246 22 C -0.178 4.178 23 N -0.116 5.116 24 O 0.010 5.990 25 H 0.087 0.913 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.222 0.778 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.083 -11.791 4.413 13.235 hybrid contribution -0.012 1.134 0.399 1.202 sum 4.071 -10.657 4.813 12.382 Atomic orbital electron populations 1.69862 1.06839 1.28998 1.48583 1.25649 0.95963 1.02368 0.93120 0.85273 0.78491 0.78081 0.78513 1.19851 1.19506 1.19461 1.21247 0.93776 0.89737 1.53939 0.92457 1.20299 0.87196 0.82803 0.93851 0.94383 1.25368 0.95123 0.87057 1.01202 1.98627 1.74990 1.46652 1.98944 1.86099 1.49225 1.24955 1.63481 1.19556 0.93012 0.87376 0.90014 1.21491 0.96385 1.02232 1.03181 1.21420 1.00368 0.91810 0.94753 1.21287 0.93177 1.00290 1.02772 1.21243 0.97542 0.94513 0.93147 1.17283 0.90452 0.97089 1.05911 1.22793 0.96486 1.00290 0.84108 1.23116 0.89057 1.09403 1.02989 1.25556 1.03836 1.00328 0.88129 1.73839 0.89839 1.21048 1.26904 1.84965 1.20732 1.65965 1.27386 0.91320 0.86226 0.91271 0.85991 0.83361 0.81510 0.81966 0.77759 0.75558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.40 11.29 21.45 0.24 -47.15 16 2 C 0.03 1.58 5.29 84.65 0.45 2.03 16 3 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -29.92 8.89 25.60 0.23 -29.69 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 9 C 0.21 10.76 2.15 29.85 0.06 10.83 16 10 H 0.04 2.01 5.49 -2.39 -0.01 2.00 16 11 C -0.02 -1.16 6.17 71.98 0.44 -0.72 16 12 Cl -0.22 -9.03 25.68 -2.72 -0.07 -9.10 16 13 O -0.32 -15.76 9.06 -91.27 -0.83 -16.59 16 14 C 0.15 6.03 6.23 22.79 0.14 6.17 16 15 C -0.21 -7.90 7.20 22.34 0.16 -7.74 16 16 C -0.07 -1.79 10.03 22.31 0.22 -1.57 16 17 C -0.16 -3.48 10.03 22.24 0.22 -3.25 16 18 C -0.05 -1.14 9.72 22.51 0.22 -0.92 16 19 C -0.11 -3.61 5.83 -20.01 -0.12 -3.72 16 20 C 0.03 0.93 6.44 24.47 0.16 1.09 16 21 C -0.22 -5.98 11.06 22.62 0.25 -5.73 16 22 C 0.00 -0.03 12.15 85.58 1.04 1.01 16 23 N -0.41 -14.93 12.05 -58.51 -0.71 -15.64 16 24 O 0.07 2.88 11.14 67.14 0.75 3.63 16 25 H 0.28 13.55 8.31 -92.70 -0.77 12.78 16 26 H 0.12 6.02 5.95 -2.39 -0.01 6.00 16 27 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.12 5.01 4.83 -2.91 -0.01 4.99 16 29 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.21 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.23 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -63.43 302.09 6.05 -57.38 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.15 Total: 16.23 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.48 Total: -32.22 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.46 Total: -62.79 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.08 Total: -12.96 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: -9.03 SS G_CDS: -0.07 Total: -9.10 kcal Total: -63.43 6.05 -57.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225357439.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.239 kcal (2) G-P(sol) polarization free energy of solvation -63.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds