Wall clock time and date at job start Tue Mar 31 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46937 * 299.99874 * 3 2 1 6 6 H 1.48508 * 109.46885 * 59.99762 * 3 2 1 7 7 C 1.37879 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00839 * 176.89496 * 7 2 1 9 9 C 1.50702 * 119.99562 * 356.89864 * 7 2 1 10 10 H 1.09006 * 109.47302 * 32.90644 * 9 7 2 11 11 C 1.52999 * 109.47163 * 152.90223 * 9 7 2 12 12 Cl 1.80303 * 109.47319 * 185.69071 * 11 9 7 13 13 O 1.42898 * 109.47270 * 272.90685 * 9 7 2 14 14 C 1.35960 * 117.00382 * 141.22726 * 13 9 7 15 15 C 1.39305 * 119.83497 * 185.41576 * 14 13 9 16 16 C 1.37719 * 120.63601 * 179.71972 * 15 14 13 17 17 C 1.39115 * 119.96725 * 0.55150 * 16 15 14 18 18 N 1.38013 * 120.83838 * 179.70751 * 17 16 15 19 19 H 0.96989 * 119.52178 * 0.02562 * 18 17 16 20 20 C 1.34448 * 120.95814 * 180.02562 * 18 17 16 21 21 O 1.21896 * 119.16696 * 179.97438 * 20 18 17 22 22 C 1.41116 * 121.65573 * 359.97437 * 20 18 17 23 23 C 1.35602 * 120.24066 * 359.97438 * 22 20 18 24 24 C 1.40740 * 119.58243 * 359.72174 * 17 16 15 25 25 C 1.38023 * 119.83359 * 5.68657 * 14 13 9 26 26 H 0.96994 * 119.99740 * 186.34438 * 1 2 3 27 27 H 1.08997 * 109.47665 * 305.69445 * 11 9 7 28 28 H 1.08998 * 109.46923 * 65.69683 * 11 9 7 29 29 H 1.08003 * 119.68380 * 359.97438 * 15 14 13 30 30 H 1.08000 * 120.01617 * 180.25464 * 16 15 14 31 31 H 1.07999 * 119.88029 * 179.97438 * 22 20 18 32 32 H 1.07997 * 120.71917 * 179.97438 * 23 22 20 33 33 H 1.07994 * 120.21726 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0834 -1.1948 -0.0501 9 6 1.2527 -2.4981 0.0717 10 1 0.2986 -2.3962 -0.4455 11 6 2.0788 -3.6001 -0.5947 12 17 1.1118 -5.1206 -0.6590 13 8 1.0190 -2.8392 1.4396 14 6 -0.1846 -3.3956 1.7401 15 6 -0.5196 -3.6468 3.0687 16 6 -1.7366 -4.2045 3.3922 17 6 -2.6397 -4.5331 2.3864 18 7 -3.8617 -5.0984 2.6899 19 1 -4.0930 -5.2680 3.6164 20 6 -4.7361 -5.4174 1.7197 21 8 -5.8060 -5.9156 2.0246 22 6 -4.4465 -5.1899 0.3575 23 6 -3.2631 -4.6363 -0.0059 24 6 -2.3030 -4.2863 1.0424 25 6 -1.0660 -3.7140 0.7268 26 1 -0.4849 -0.8349 0.0928 27 1 2.3429 -3.2945 -1.6071 28 1 2.9877 -3.7718 -0.0182 29 1 0.1800 -3.3979 3.8530 30 1 -1.9876 -4.3912 4.4259 31 1 -5.1699 -5.4576 -0.3984 32 1 -3.0333 -4.4592 -1.0462 33 1 -0.8028 -3.5222 -0.3028 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225401956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:50 Heat of formation + Delta-G solvation = -65.560384 kcal Electronic energy + Delta-G solvation = -20876.857342 eV Core-core repulsion = 17506.756873 eV Total energy + Delta-G solvation = -3370.100470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23933 -40.62464 -38.79640 -36.84347 -36.04859 -35.07495 -34.99725 -31.87131 -31.18457 -29.45312 -26.73103 -25.29347 -24.56667 -24.12164 -22.54416 -19.93011 -19.54043 -19.29912 -18.41240 -17.42993 -16.72995 -16.60000 -16.41277 -16.17163 -15.64044 -15.55688 -15.02313 -14.87596 -14.59844 -14.18843 -13.92552 -13.76275 -13.64508 -13.21831 -13.04972 -12.71493 -12.37369 -12.04593 -11.90986 -11.85042 -11.44081 -11.30778 -11.23829 -11.07013 -10.67848 -10.51692 -9.52529 -8.80158 -8.52059 -6.65101 -0.58473 0.28953 0.77724 1.34882 1.57166 1.63058 1.80908 1.96002 2.08045 2.42658 2.62385 2.92747 3.28318 3.46855 3.57991 3.67653 4.00554 4.07013 4.11466 4.15796 4.24686 4.44122 4.62829 4.68723 4.76953 4.82304 5.00609 5.13577 5.19360 5.38688 5.56536 5.68159 5.72667 5.99701 5.99997 6.36885 6.82986 6.92949 7.21886 8.57504 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.005081 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.956374 B = 5508.945451 C = 6057.567894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.007 4.007 3 Si 1.121 2.879 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.612 4.612 8 H 0.066 0.934 9 C 0.174 3.826 10 H 0.043 0.957 11 C -0.023 4.023 12 Cl -0.204 7.204 13 O -0.332 6.332 14 C 0.102 3.898 15 C -0.113 4.113 16 C -0.113 4.113 17 C 0.125 3.875 18 N -0.613 5.613 19 H 0.422 0.578 20 C 0.528 3.472 21 O -0.594 6.594 22 C -0.227 4.227 23 C -0.004 4.004 24 C -0.105 4.105 25 C -0.153 4.153 26 H 0.265 0.735 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.147 0.853 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -6.979 1.991 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.210 4.210 3 Si 0.942 3.058 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.648 4.648 8 H 0.084 0.916 9 C 0.120 3.880 10 H 0.060 0.940 11 C -0.086 4.086 12 Cl -0.178 7.178 13 O -0.247 6.247 14 C 0.055 3.945 15 C -0.132 4.132 16 C -0.133 4.133 17 C 0.024 3.976 18 N -0.252 5.252 19 H 0.262 0.738 20 C 0.326 3.674 21 O -0.479 6.479 22 C -0.247 4.247 23 C -0.025 4.025 24 C -0.108 4.108 25 C -0.172 4.172 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.165 0.835 30 H 0.191 0.809 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.068 -5.723 1.994 6.154 hybrid contribution 0.033 -1.769 0.210 1.782 sum -1.036 -7.492 2.204 7.878 Atomic orbital electron populations 1.70865 1.07975 1.31208 1.44444 1.27392 0.96313 1.06522 0.90767 0.82874 0.74548 0.70821 0.77551 1.19039 1.20084 1.20934 1.22280 0.95544 0.91006 1.55983 0.91601 1.20636 0.96372 0.92216 0.78748 0.93954 1.25056 0.96349 0.82940 1.04268 1.98674 1.76681 1.43204 1.99225 1.86497 1.30898 1.74066 1.33247 1.19432 0.87011 0.93793 0.94282 1.20712 0.97718 1.00839 0.93978 1.20747 0.91971 1.01090 0.99466 1.17874 0.86827 0.99223 0.93657 1.43160 1.14348 1.55853 1.11826 0.73820 1.17347 0.83404 0.78891 0.87778 1.90896 1.24786 1.47768 1.84479 1.22262 1.00132 1.07289 0.95065 1.22897 0.90705 0.89079 0.99828 1.18608 0.95604 1.04666 0.91930 1.21269 0.93627 1.02536 0.99806 0.92462 0.87161 0.88718 0.83486 0.80920 0.81260 0.81921 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.79 13.61 21.45 0.29 -49.50 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 1.12 44.72 29.90 68.60 2.05 46.77 16 4 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.61 -30.03 8.69 25.60 0.22 -29.81 16 8 H 0.07 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.17 7.65 1.88 29.85 0.06 7.71 16 10 H 0.04 1.99 3.95 -2.38 -0.01 1.98 16 11 C -0.02 -0.84 6.31 71.98 0.45 -0.39 16 12 Cl -0.20 -6.75 25.76 -2.72 -0.07 -6.82 16 13 O -0.33 -14.66 9.69 -93.10 -0.90 -15.56 16 14 C 0.10 3.89 6.25 22.48 0.14 4.03 16 15 C -0.11 -3.55 9.95 22.40 0.22 -3.32 16 16 C -0.11 -2.88 9.90 22.36 0.22 -2.66 16 17 C 0.12 3.54 6.65 38.99 0.26 3.80 16 18 N -0.61 -16.06 5.30 -312.05 -1.66 -17.71 16 19 H 0.42 8.80 8.76 -92.72 -0.81 7.99 16 20 C 0.53 16.09 7.66 85.00 0.65 16.74 16 21 O -0.59 -21.60 17.87 -4.98 -0.09 -21.69 16 22 C -0.23 -6.05 9.91 22.37 0.22 -5.83 16 23 C 0.00 -0.12 10.09 23.79 0.24 0.12 16 24 C -0.11 -3.32 5.87 -20.14 -0.12 -3.44 16 25 C -0.15 -5.50 7.01 22.62 0.16 -5.34 16 26 H 0.26 14.54 6.66 -92.71 -0.62 13.92 16 27 H 0.11 3.67 8.14 -2.39 -0.02 3.66 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.26 16 29 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 30 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.13 4.96 4.80 -2.91 -0.01 4.95 16 Total: -1.00 -62.43 299.59 3.33 -59.10 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.51 Total: 23.67 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 3.19 Total: -18.27 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -1.36 Total: -67.21 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.99 Total: -37.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.05 Total: 46.77 kcal Atomic # 17 Polarization: -6.75 SS G_CDS: -0.07 Total: -6.82 kcal Total: -62.43 3.33 -59.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225401956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.461 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds