Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99324 * 2 1 4 4 H 1.48504 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47532 * 300.00086 * 3 2 1 6 6 H 1.48500 * 109.47191 * 59.99864 * 3 2 1 7 7 C 1.37870 * 120.00698 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99997 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46640 * 299.99450 * 9 7 2 11 11 C 1.52997 * 109.47228 * 59.99058 * 9 7 2 12 12 Cl 1.80301 * 109.47284 * 185.00119 * 11 9 7 13 13 O 1.42900 * 109.47289 * 179.97438 * 9 7 2 14 14 C 1.35598 * 116.99965 * 149.99792 * 13 9 7 15 15 C 1.40019 * 119.21070 * 179.97438 * 14 13 9 16 16 C 1.36309 * 119.88442 * 180.02562 * 15 14 13 17 17 C 1.40943 * 118.25451 * 0.02562 * 16 15 14 18 18 C 1.40428 * 121.27252 * 179.97438 * 17 16 15 19 19 C 1.36201 * 119.74304 * 179.97438 * 18 17 16 20 20 C 1.39219 * 120.91526 * 359.97438 * 19 18 17 21 21 C 1.36585 * 120.97471 * 0.02562 * 20 19 18 22 22 O 1.35876 * 120.17226 * 179.72995 * 21 20 19 23 23 C 1.41013 * 119.65580 * 359.97438 * 21 20 19 24 24 N 1.31517 * 119.21266 * 0.02562 * 14 13 9 25 25 H 0.96996 * 120.01028 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47672 * 305.00736 * 11 9 7 27 27 H 1.09007 * 109.46824 * 65.00521 * 11 9 7 28 28 H 1.08007 * 120.05672 * 0.02562 * 15 14 13 29 29 H 1.08003 * 120.87299 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.13187 * 359.97165 * 18 17 16 31 31 H 1.07999 * 119.54381 * 179.97438 * 19 18 17 32 32 H 1.08003 * 119.51642 * 179.97438 * 20 19 18 33 33 H 0.96695 * 114.00352 * 89.99489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3467 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0005 10 1 0.6244 -2.5567 0.8904 11 6 0.3720 -2.5805 -1.2489 12 17 -0.6384 -4.0720 -1.1767 13 8 2.1800 -3.5852 0.0005 14 6 1.7849 -4.7330 0.6047 15 6 2.6584 -5.8270 0.6312 16 6 2.2751 -6.9877 1.2344 17 6 0.9933 -7.0449 1.8177 18 6 0.5336 -8.2087 2.4549 19 6 -0.7106 -8.2294 3.0087 20 6 -1.5368 -7.1103 2.9532 21 6 -1.1236 -5.9610 2.3418 22 8 -1.9455 -4.8801 2.2924 23 6 0.1586 -5.9036 1.7577 24 7 0.5899 -4.7925 1.1508 25 1 -0.4851 0.8399 -0.0004 26 1 -0.2755 -1.7049 -1.2952 27 1 1.0040 -2.6124 -2.1365 28 1 3.6343 -5.7512 0.1745 29 1 2.9362 -7.8412 1.2645 30 1 1.1641 -9.0841 2.5056 31 1 -1.0610 -9.1264 3.4976 32 1 -2.5195 -7.1518 3.3995 33 1 -1.8510 -4.2794 3.0442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225589863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -33.783060 kcal Electronic energy + Delta-G solvation = -21069.843174 eV Core-core repulsion = 17701.120673 eV Total energy + Delta-G solvation = -3368.722502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63466 -38.54296 -36.97388 -35.56958 -34.52045 -33.31948 -32.50058 -30.15037 -29.03374 -28.60678 -25.24262 -23.99673 -23.14044 -21.84572 -20.83314 -18.38781 -18.04843 -17.26423 -16.56889 -16.00638 -15.32719 -15.01188 -14.87236 -14.39286 -14.28712 -13.58099 -13.31409 -13.22620 -12.84889 -12.68470 -11.97148 -11.90215 -11.72261 -11.61584 -11.25809 -11.08556 -10.86389 -10.54192 -10.33156 -10.27733 -10.08293 -9.60091 -9.23116 -8.92991 -8.85598 -8.51631 -8.14452 -7.44531 -6.34680 -4.43343 0.69622 1.20567 2.24799 3.15161 3.22525 3.23642 3.28339 3.64601 3.90371 4.28332 4.34782 4.50834 4.67827 4.94566 5.00320 5.09725 5.18288 5.31518 5.50920 5.59747 5.90259 6.03732 6.17095 6.23027 6.35580 6.45943 6.48664 6.57742 6.67409 6.88144 7.09997 7.35995 7.57306 7.83243 8.00194 8.28443 8.47858 8.72645 9.23269 10.71856 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.005229 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.943897 B = 5353.753176 C = 5697.796869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.213 3.787 10 H 0.069 0.931 11 C -0.033 4.033 12 Cl -0.227 7.227 13 O -0.302 6.302 14 C 0.361 3.639 15 C -0.174 4.174 16 C -0.045 4.045 17 C -0.136 4.136 18 C -0.094 4.094 19 C -0.129 4.129 20 C -0.137 4.137 21 C 0.129 3.871 22 O -0.476 6.476 23 C 0.152 3.848 24 N -0.494 5.494 25 H 0.270 0.730 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -12.849 4.934 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.092 0.908 9 C 0.158 3.842 10 H 0.087 0.913 11 C -0.096 4.096 12 Cl -0.201 7.201 13 O -0.207 6.207 14 C 0.169 3.831 15 C -0.195 4.195 16 C -0.070 4.070 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.147 4.147 20 C -0.157 4.157 21 C 0.083 3.917 22 O -0.285 6.285 23 C 0.028 3.972 24 N -0.220 5.220 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.070 -12.240 4.247 12.956 hybrid contribution 0.784 0.441 0.323 0.956 sum 0.855 -11.798 4.571 12.682 Atomic orbital electron populations 1.69849 1.05907 1.27723 1.48577 1.24951 0.95137 0.99624 0.94163 0.86174 0.79948 0.81927 0.77913 1.19372 1.20565 1.20564 1.21062 0.94192 0.88152 1.52905 0.90803 1.20492 0.87128 0.81306 0.95270 0.91335 1.25510 0.95523 0.87495 1.01067 1.98653 1.75346 1.47080 1.98985 1.86285 1.45322 1.19748 1.69307 1.20215 0.87858 0.87527 0.87516 1.20995 1.01529 0.92414 1.04537 1.21140 0.94339 0.97181 0.94343 1.18608 0.95846 0.95467 1.03936 1.20830 0.96333 0.96507 0.97619 1.20536 0.94375 0.98105 1.01688 1.21030 1.00642 0.93409 1.00638 1.17949 0.87690 0.88733 0.97337 1.84848 1.59226 1.34820 1.49593 1.18986 0.93592 0.89005 0.95642 1.68034 1.14237 1.26367 1.13337 0.91988 0.85179 0.91635 0.84265 0.84247 0.85804 0.85956 0.85417 0.75589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.79 11.29 55.43 0.63 -23.17 16 2 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 3 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.01 8.89 -34.44 -0.31 -14.32 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.21 5.43 2.25 -27.88 -0.06 5.36 16 10 H 0.07 1.91 6.96 -51.93 -0.36 1.55 16 11 C -0.03 -0.81 6.17 37.16 0.23 -0.58 16 12 Cl -0.23 -5.23 25.90 -51.86 -1.34 -6.57 16 13 O -0.30 -7.13 9.72 -18.49 -0.18 -7.31 16 14 C 0.36 7.56 6.66 -17.02 -0.11 7.45 16 15 C -0.17 -2.87 9.95 -39.61 -0.39 -3.27 16 16 C -0.05 -0.63 9.88 -39.25 -0.39 -1.02 16 17 C -0.14 -2.11 5.74 -106.80 -0.61 -2.72 16 18 C -0.09 -1.16 9.77 -39.49 -0.39 -1.55 16 19 C -0.13 -1.51 9.95 -39.95 -0.40 -1.91 16 20 C -0.14 -1.85 9.87 -39.81 -0.39 -2.24 16 21 C 0.13 2.18 6.71 -39.13 -0.26 1.92 16 22 O -0.48 -8.29 13.29 -19.35 -0.26 -8.55 16 23 C 0.15 2.82 6.61 -84.73 -0.56 2.26 16 24 N -0.49 -10.52 6.05 -10.96 -0.07 -10.59 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.13 3.41 5.95 -51.93 -0.31 3.10 16 27 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 29 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.39 5.23 9.06 45.56 0.41 5.65 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -30.32 301.40 -7.78 -38.10 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.34 Total: 7.37 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.74 Total: -9.01 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.56 Total: -33.75 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.44 Total: -15.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -1.34 Total: -6.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.32 -7.78 -38.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225589863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.322 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds