Wall clock time and date at job start Tue Mar 31 2020 06:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99324 * 2 1 4 4 H 1.48504 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47532 * 300.00086 * 3 2 1 6 6 H 1.48500 * 109.47191 * 59.99864 * 3 2 1 7 7 C 1.37870 * 120.00698 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00349 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99997 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46640 * 299.99450 * 9 7 2 11 11 C 1.52997 * 109.47228 * 59.99058 * 9 7 2 12 12 Cl 1.80301 * 109.47284 * 185.00119 * 11 9 7 13 13 O 1.42900 * 109.47289 * 179.97438 * 9 7 2 14 14 C 1.35598 * 116.99965 * 149.99792 * 13 9 7 15 15 C 1.40019 * 119.21070 * 179.97438 * 14 13 9 16 16 C 1.36309 * 119.88442 * 180.02562 * 15 14 13 17 17 C 1.40943 * 118.25451 * 0.02562 * 16 15 14 18 18 C 1.40428 * 121.27252 * 179.97438 * 17 16 15 19 19 C 1.36201 * 119.74304 * 179.97438 * 18 17 16 20 20 C 1.39219 * 120.91526 * 359.97438 * 19 18 17 21 21 C 1.36585 * 120.97471 * 0.02562 * 20 19 18 22 22 O 1.35876 * 120.17226 * 179.72995 * 21 20 19 23 23 C 1.41013 * 119.65580 * 359.97438 * 21 20 19 24 24 N 1.31517 * 119.21266 * 0.02562 * 14 13 9 25 25 H 0.96996 * 120.01028 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47672 * 305.00736 * 11 9 7 27 27 H 1.09007 * 109.46824 * 65.00521 * 11 9 7 28 28 H 1.08007 * 120.05672 * 0.02562 * 15 14 13 29 29 H 1.08003 * 120.87299 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.13187 * 359.97165 * 18 17 16 31 31 H 1.07999 * 119.54381 * 179.97438 * 19 18 17 32 32 H 1.08003 * 119.51642 * 179.97438 * 20 19 18 33 33 H 0.96695 * 114.00352 * 89.99489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3467 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0005 10 1 0.6244 -2.5567 0.8904 11 6 0.3720 -2.5805 -1.2489 12 17 -0.6384 -4.0720 -1.1767 13 8 2.1800 -3.5852 0.0005 14 6 1.7849 -4.7330 0.6047 15 6 2.6584 -5.8270 0.6312 16 6 2.2751 -6.9877 1.2344 17 6 0.9933 -7.0449 1.8177 18 6 0.5336 -8.2087 2.4549 19 6 -0.7106 -8.2294 3.0087 20 6 -1.5368 -7.1103 2.9532 21 6 -1.1236 -5.9610 2.3418 22 8 -1.9455 -4.8801 2.2924 23 6 0.1586 -5.9036 1.7577 24 7 0.5899 -4.7925 1.1508 25 1 -0.4851 0.8399 -0.0004 26 1 -0.2755 -1.7049 -1.2952 27 1 1.0040 -2.6124 -2.1365 28 1 3.6343 -5.7512 0.1745 29 1 2.9362 -7.8412 1.2645 30 1 1.1641 -9.0841 2.5056 31 1 -1.0610 -9.1264 3.4976 32 1 -2.5195 -7.1518 3.3995 33 1 -1.8510 -4.2794 3.0442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225589863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:43 Heat of formation + Delta-G solvation = -54.510140 kcal Electronic energy + Delta-G solvation = -21070.741968 eV Core-core repulsion = 17701.120673 eV Total energy + Delta-G solvation = -3369.621295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89346 -40.01080 -38.33916 -36.88773 -36.34636 -35.26291 -33.75092 -31.74197 -30.49615 -29.86406 -27.27035 -25.33855 -24.39671 -23.13321 -22.47511 -19.72750 -19.30964 -18.86028 -18.33080 -17.24196 -16.84577 -16.59366 -16.40230 -15.76979 -15.52801 -15.12625 -14.82046 -14.52861 -14.29304 -14.09213 -13.79031 -13.50431 -13.02038 -12.90532 -12.84894 -12.79191 -12.61211 -12.22459 -11.97238 -11.55657 -11.48728 -11.29059 -11.12933 -10.68624 -10.65027 -10.12343 -9.35556 -8.75939 -8.34408 -6.52277 -0.43150 -0.01785 1.08791 1.39473 1.41618 1.55401 1.70993 2.07689 2.23556 2.57974 2.98825 3.14297 3.32525 3.43524 3.94529 3.98631 4.05117 4.26784 4.36477 4.43342 4.51189 4.54564 4.79022 4.83770 5.01506 5.08601 5.15813 5.33407 5.41762 5.50968 5.52093 5.60591 5.85109 5.92048 6.47101 6.71771 6.84482 7.15732 7.22733 8.72299 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.005229 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.943897 B = 5353.753176 C = 5697.796869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.225 3.775 10 H 0.033 0.967 11 C -0.023 4.023 12 Cl -0.215 7.215 13 O -0.321 6.321 14 C 0.323 3.677 15 C -0.191 4.191 16 C -0.021 4.021 17 C -0.146 4.146 18 C -0.083 4.083 19 C -0.121 4.121 20 C -0.121 4.121 21 C 0.087 3.913 22 O -0.499 6.499 23 C 0.113 3.887 24 N -0.529 5.529 25 H 0.274 0.726 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.159 0.841 29 H 0.194 0.806 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -15.699 5.924 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.086 0.914 9 C 0.170 3.830 10 H 0.051 0.949 11 C -0.086 4.086 12 Cl -0.189 7.189 13 O -0.227 6.227 14 C 0.131 3.869 15 C -0.212 4.212 16 C -0.045 4.045 17 C -0.149 4.149 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.141 4.141 21 C 0.042 3.958 22 O -0.310 6.310 23 C -0.010 4.010 24 N -0.255 5.255 25 H 0.083 0.917 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.211 0.789 30 H 0.188 0.812 31 H 0.184 0.816 32 H 0.168 0.832 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.835 -15.130 5.255 16.038 hybrid contribution 0.419 1.067 0.159 1.157 sum 1.254 -14.063 5.414 15.121 Atomic orbital electron populations 1.69960 1.07290 1.28741 1.48706 1.25798 0.95916 1.02806 0.93222 0.85151 0.78713 0.77488 0.78197 1.18912 1.19608 1.20036 1.21312 0.94096 0.89428 1.53961 0.91414 1.20029 0.87016 0.82081 0.93895 0.94930 1.25220 0.95175 0.87270 1.00920 1.98643 1.74976 1.46232 1.99008 1.86205 1.45073 1.20514 1.70953 1.20681 0.89321 0.87695 0.89209 1.21223 1.01849 0.92070 1.06034 1.21723 0.94102 0.97434 0.91276 1.19032 0.96119 0.95645 1.04080 1.21338 0.96977 0.96371 0.95468 1.21077 0.93740 0.98610 1.00449 1.21406 1.01694 0.92535 0.98473 1.18341 0.87893 0.89715 0.99896 1.84807 1.59681 1.35789 1.50679 1.19470 0.95034 0.89671 0.96838 1.67848 1.14908 1.28439 1.14264 0.91659 0.87159 0.91280 0.82372 0.78903 0.81238 0.81577 0.83227 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 11.29 21.44 0.24 -50.55 16 2 C 0.02 1.26 5.29 84.65 0.45 1.71 16 3 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -30.72 8.89 25.60 0.23 -30.49 16 8 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.23 12.21 2.25 29.85 0.07 12.28 16 10 H 0.03 1.98 6.96 -2.39 -0.02 1.96 16 11 C -0.02 -1.17 6.17 71.98 0.44 -0.72 16 12 Cl -0.21 -10.33 25.90 -2.72 -0.07 -10.40 16 13 O -0.32 -16.04 9.72 -89.08 -0.87 -16.90 16 14 C 0.32 14.08 6.66 85.17 0.57 14.64 16 15 C -0.19 -6.21 9.95 22.25 0.22 -5.99 16 16 C -0.02 -0.52 9.88 22.48 0.22 -0.30 16 17 C -0.15 -4.17 5.74 -21.27 -0.12 -4.30 16 18 C -0.08 -1.63 9.77 22.33 0.22 -1.41 16 19 C -0.12 -2.25 9.95 22.03 0.22 -2.03 16 20 C -0.12 -2.97 9.87 22.12 0.22 -2.75 16 21 C 0.09 2.97 6.71 22.56 0.15 3.12 16 22 O -0.50 -18.38 13.29 -92.15 -1.22 -19.60 16 23 C 0.11 4.22 6.61 40.34 0.27 4.49 16 24 N -0.53 -23.63 6.05 -301.88 -1.83 -25.45 16 25 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.11 6.10 5.95 -2.39 -0.01 6.09 16 27 H 0.07 3.41 8.14 -2.38 -0.02 3.39 16 28 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.40 11.77 9.06 -74.06 -0.67 11.10 16 Total: -1.00 -71.03 301.40 1.92 -69.11 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.49 Total: 21.44 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 3.15 Total: -11.74 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.58 Total: -76.00 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -2.09 Total: -36.50 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -10.33 SS G_CDS: -0.07 Total: -10.40 kcal Total: -71.03 1.92 -69.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225589863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.601 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds