Wall clock time and date at job start Tue Mar 31 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48504 * 109.47173 * 264.80869 * 3 2 1 5 5 H 1.48500 * 109.46968 * 24.80398 * 3 2 1 6 6 H 1.48499 * 109.47415 * 144.80193 * 3 2 1 7 7 C 1.37875 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99833 * 4.83898 * 7 2 1 9 9 C 1.50697 * 120.00075 * 184.83896 * 7 2 1 10 10 H 1.08994 * 109.47102 * 334.98849 * 9 7 2 11 11 C 1.53001 * 109.47015 * 94.99224 * 9 7 2 12 12 Cl 1.80309 * 109.47075 * 185.70977 * 11 9 7 13 13 O 1.42896 * 109.47193 * 214.99196 * 9 7 2 14 14 C 1.35846 * 117.00407 * 150.00004 * 13 9 7 15 15 N 1.33569 * 125.56094 * 359.95896 * 14 13 9 16 16 C 1.30897 * 109.80130 * 180.02562 * 15 14 13 17 17 N 1.34660 * 108.12741 * 359.97438 * 16 15 14 18 18 C 1.40151 * 126.79525 * 180.02562 * 17 16 15 19 19 C 1.38842 * 120.06725 * 359.73172 * 18 17 16 20 20 C 1.38119 * 119.93173 * 179.71652 * 19 18 17 21 21 C 1.38280 * 120.06528 * 0.55420 * 20 19 18 22 22 C 1.38277 * 120.13806 * 359.71928 * 21 20 19 23 23 C 1.38126 * 120.06631 * 0.02562 * 22 21 20 24 24 N 1.31102 * 125.56543 * 179.97438 * 14 13 9 25 25 H 0.96999 * 120.00433 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47330 * 305.70320 * 11 9 7 27 27 H 1.08996 * 109.47725 * 65.70966 * 11 9 7 28 28 H 1.08003 * 125.93942 * 179.97438 * 16 15 14 29 29 H 1.08003 * 120.03757 * 359.97438 * 19 18 17 30 30 H 1.08003 * 119.96576 * 180.27787 * 20 19 18 31 31 H 1.08000 * 119.92909 * 179.74444 * 21 20 19 32 32 H 1.08003 * 119.97045 * 180.02562 * 22 21 20 33 33 H 1.07997 * 120.03413 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3959 2.6818 0.5874 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1962 0.1106 10 1 3.9001 -0.2482 -0.2569 11 6 3.9113 -1.3823 1.5746 12 17 5.7001 -1.2176 1.7302 13 8 4.0408 -2.2674 -0.6705 14 6 5.2771 -2.0861 -1.2034 15 7 6.0326 -0.9941 -1.0593 16 6 7.1631 -1.1492 -1.7008 17 7 7.1537 -2.3657 -2.2782 18 6 8.1704 -2.9323 -3.0588 19 6 9.3352 -2.2190 -3.3082 20 6 10.3379 -2.7823 -4.0731 21 6 10.1777 -4.0508 -4.5998 22 6 9.0165 -4.7615 -4.3579 23 6 8.0124 -4.2056 -3.5894 24 7 5.9234 -2.9544 -1.9432 25 1 -0.4851 0.8400 -0.0004 26 1 3.4222 -0.6238 2.1857 27 1 3.6070 -2.3729 1.9124 28 1 7.9641 -0.4270 -1.7573 29 1 9.4589 -1.2263 -2.9011 30 1 11.2461 -2.2298 -4.2637 31 1 10.9615 -4.4876 -5.2010 32 1 8.8944 -5.7522 -4.7703 33 1 7.1058 -4.7612 -3.4005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226195597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:01 Heat of formation + Delta-G solvation = 84.492384 kcal Electronic energy + Delta-G solvation = -20404.671265 eV Core-core repulsion = 17073.370323 eV Total energy + Delta-G solvation = -3331.300942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97522 -39.30435 -37.83576 -35.03685 -33.84362 -33.12413 -31.56082 -30.91345 -30.15861 -28.87729 -25.36095 -23.96167 -23.24309 -21.91765 -21.23348 -19.97646 -18.42860 -17.54151 -16.68909 -16.17916 -15.97860 -15.51488 -14.89395 -14.62732 -14.32978 -14.06185 -13.68322 -13.31264 -13.20622 -12.85701 -12.71161 -12.05199 -12.01444 -11.81242 -11.51656 -11.16463 -11.07570 -10.87503 -10.52300 -10.05059 -9.88214 -9.66517 -9.40719 -9.31925 -9.25729 -9.04505 -8.86446 -8.00138 -6.46311 -4.55135 0.72651 1.09884 2.16435 2.25045 3.05145 3.17870 3.20700 3.26910 3.40665 3.60465 3.64332 4.11769 4.34861 4.55366 4.66425 4.84838 4.90095 5.06155 5.13717 5.21494 5.48950 5.64985 5.82198 5.88315 5.97420 6.09459 6.16727 6.24893 6.46529 6.48449 6.59480 6.67135 7.11420 7.13907 7.76718 8.17859 8.50058 8.67337 9.09967 10.63450 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.004160 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.294827 B = 6729.307783 C = 6946.403086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.089 3.911 3 Si 0.866 3.134 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.186 3.814 10 H 0.064 0.936 11 C -0.036 4.036 12 Cl -0.220 7.220 13 O -0.269 6.269 14 C 0.433 3.567 15 N -0.542 5.542 16 C 0.275 3.725 17 N -0.342 5.342 18 C 0.173 3.827 19 C -0.145 4.145 20 C -0.093 4.093 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.118 4.118 24 N -0.328 5.328 25 H 0.275 0.725 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.218 0.782 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.650 -3.069 -6.136 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.562 4.562 8 H 0.109 0.891 9 C 0.130 3.870 10 H 0.082 0.918 11 C -0.100 4.100 12 Cl -0.194 7.194 13 O -0.169 6.169 14 C 0.118 3.882 15 N -0.277 5.277 16 C -0.021 4.021 17 N -0.129 5.129 18 C 0.079 3.921 19 C -0.166 4.166 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.114 4.114 23 C -0.139 4.139 24 N -0.170 5.170 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.108 0.892 28 H 0.234 0.766 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.803 -3.490 -5.984 20.039 hybrid contribution 0.616 1.202 0.111 1.355 sum 19.419 -2.288 -5.873 20.416 Atomic orbital electron populations 1.69834 1.06247 1.28172 1.45994 1.24942 0.94911 0.99001 0.92950 0.86974 0.80713 0.83054 0.80158 1.19162 1.20445 1.17685 1.20681 0.86230 0.96133 1.53160 0.89121 1.20901 0.94493 0.86628 0.84930 0.91787 1.25798 0.77503 1.04690 1.01969 1.98666 1.23552 1.98748 1.98448 1.86515 1.21200 1.45158 1.63983 1.22199 0.88364 0.86955 0.90653 1.70637 1.04266 1.27118 1.25651 1.25859 0.97233 0.87931 0.91090 1.47557 1.12981 1.13090 1.39282 1.17589 0.86652 0.93935 0.93877 1.20796 0.92679 1.00658 1.02454 1.20930 0.98197 0.95486 0.96591 1.21197 0.98098 0.95142 1.01077 1.21092 0.93003 1.00015 0.97318 1.21028 1.00771 0.93857 0.98198 1.78369 0.93654 1.18668 1.26344 0.91504 0.88275 0.89166 0.76573 0.85178 0.85128 0.85643 0.85202 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.80 13.96 55.43 0.77 -24.03 16 2 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 20.30 26.99 -169.99 -4.59 15.71 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.25 -5.73 6.82 56.52 0.39 -5.34 16 7 C -0.53 -14.38 9.23 -34.44 -0.32 -14.70 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.19 4.53 1.94 -27.88 -0.05 4.48 16 10 H 0.06 1.60 4.42 -51.93 -0.23 1.37 16 11 C -0.04 -0.78 6.31 37.16 0.23 -0.55 16 12 Cl -0.22 -4.41 26.13 -51.86 -1.36 -5.77 16 13 O -0.27 -6.62 9.83 -19.26 -0.19 -6.81 16 14 C 0.43 9.59 7.94 -91.20 -0.72 8.86 16 15 N -0.54 -10.79 8.11 -15.88 -0.13 -10.92 16 16 C 0.27 4.21 11.97 -90.39 -1.08 3.13 16 17 N -0.34 -5.54 3.81 -11.82 -0.05 -5.58 16 18 C 0.17 2.25 6.70 -83.60 -0.56 1.69 16 19 C -0.14 -1.39 9.47 -39.40 -0.37 -1.76 16 20 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 21 C -0.14 -1.07 10.04 -39.55 -0.40 -1.46 16 22 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 23 C -0.12 -1.45 9.68 -39.40 -0.38 -1.83 16 24 N -0.33 -6.68 12.07 29.19 0.35 -6.33 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 27 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.22 2.09 7.09 -52.48 -0.37 1.72 16 29 H 0.13 0.94 6.80 -52.48 -0.36 0.58 16 30 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.14 1.88 7.74 -52.49 -0.41 1.47 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.95 303.66 -8.21 -40.15 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.05 Total: 1.20 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.55 Total: -2.21 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.95 Total: -46.85 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.19 Total: -6.81 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.59 Total: 15.71 kcal Atomic # 17 Polarization: -4.41 SS G_CDS: -1.36 Total: -5.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.95 -8.21 -40.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226195597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.645 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds