Wall clock time and date at job start Tue Mar 31 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48504 * 109.47173 * 264.80869 * 3 2 1 5 5 H 1.48500 * 109.46968 * 24.80398 * 3 2 1 6 6 H 1.48499 * 109.47415 * 144.80193 * 3 2 1 7 7 C 1.37875 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99833 * 4.83898 * 7 2 1 9 9 C 1.50697 * 120.00075 * 184.83896 * 7 2 1 10 10 H 1.08994 * 109.47102 * 334.98849 * 9 7 2 11 11 C 1.53001 * 109.47015 * 94.99224 * 9 7 2 12 12 Cl 1.80309 * 109.47075 * 185.70977 * 11 9 7 13 13 O 1.42896 * 109.47193 * 214.99196 * 9 7 2 14 14 C 1.35846 * 117.00407 * 150.00004 * 13 9 7 15 15 N 1.33569 * 125.56094 * 359.95896 * 14 13 9 16 16 C 1.30897 * 109.80130 * 180.02562 * 15 14 13 17 17 N 1.34660 * 108.12741 * 359.97438 * 16 15 14 18 18 C 1.40151 * 126.79525 * 180.02562 * 17 16 15 19 19 C 1.38842 * 120.06725 * 359.73172 * 18 17 16 20 20 C 1.38119 * 119.93173 * 179.71652 * 19 18 17 21 21 C 1.38280 * 120.06528 * 0.55420 * 20 19 18 22 22 C 1.38277 * 120.13806 * 359.71928 * 21 20 19 23 23 C 1.38126 * 120.06631 * 0.02562 * 22 21 20 24 24 N 1.31102 * 125.56543 * 179.97438 * 14 13 9 25 25 H 0.96999 * 120.00433 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47330 * 305.70320 * 11 9 7 27 27 H 1.08996 * 109.47725 * 65.70966 * 11 9 7 28 28 H 1.08003 * 125.93942 * 179.97438 * 16 15 14 29 29 H 1.08003 * 120.03757 * 359.97438 * 19 18 17 30 30 H 1.08003 * 119.96576 * 180.27787 * 20 19 18 31 31 H 1.08000 * 119.92909 * 179.74444 * 21 20 19 32 32 H 1.08003 * 119.97045 * 180.02562 * 22 21 20 33 33 H 1.07997 * 120.03413 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3959 2.6818 0.5874 6 1 3.4874 1.4745 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1962 0.1106 10 1 3.9001 -0.2482 -0.2569 11 6 3.9113 -1.3823 1.5746 12 17 5.7001 -1.2176 1.7302 13 8 4.0408 -2.2674 -0.6705 14 6 5.2771 -2.0861 -1.2034 15 7 6.0326 -0.9941 -1.0593 16 6 7.1631 -1.1492 -1.7008 17 7 7.1537 -2.3657 -2.2782 18 6 8.1704 -2.9323 -3.0588 19 6 9.3352 -2.2190 -3.3082 20 6 10.3379 -2.7823 -4.0731 21 6 10.1777 -4.0508 -4.5998 22 6 9.0165 -4.7615 -4.3579 23 6 8.0124 -4.2056 -3.5894 24 7 5.9234 -2.9544 -1.9432 25 1 -0.4851 0.8400 -0.0004 26 1 3.4222 -0.6238 2.1857 27 1 3.6070 -2.3729 1.9124 28 1 7.9641 -0.4270 -1.7573 29 1 9.4589 -1.2263 -2.9011 30 1 11.2461 -2.2298 -4.2637 31 1 10.9615 -4.4876 -5.2010 32 1 8.8944 -5.7522 -4.7703 33 1 7.1058 -4.7612 -3.4005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226195597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:01 Heat of formation + Delta-G solvation = 63.614362 kcal Electronic energy + Delta-G solvation = -20405.576604 eV Core-core repulsion = 17073.370323 eV Total energy + Delta-G solvation = -3332.206281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.31108 -40.24513 -39.45192 -36.69493 -35.36840 -34.73026 -32.87180 -32.12768 -31.59131 -29.94735 -27.32291 -25.00779 -24.43256 -23.30342 -22.32748 -21.48046 -19.65685 -19.33043 -18.20736 -17.48545 -17.17163 -16.95522 -16.14437 -15.78568 -15.65844 -15.20747 -14.94670 -14.82428 -14.73968 -14.35556 -13.95387 -13.62323 -13.34209 -13.22186 -12.93783 -12.61537 -12.56808 -11.98121 -11.94087 -11.84448 -11.59068 -11.31345 -11.03889 -11.00468 -10.84830 -10.40798 -9.97666 -9.14459 -8.55118 -6.70881 -0.21350 0.37800 0.99846 1.06148 1.26572 1.31487 1.42380 1.43387 1.92937 2.15262 2.17346 2.83428 2.84701 3.20867 3.67681 3.89143 4.02086 4.09031 4.11170 4.24566 4.29007 4.45368 4.47539 4.68174 4.82971 4.85483 5.02606 5.09525 5.13465 5.41851 5.45098 5.55893 5.76152 5.86537 6.12421 6.39842 6.46794 6.95473 7.08081 8.59301 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.004160 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.294827 B = 6729.307783 C = 6946.403086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.044 3.956 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.237 1.237 7 C -0.542 4.542 8 H 0.046 0.954 9 C 0.197 3.803 10 H 0.062 0.938 11 C -0.034 4.034 12 Cl -0.199 7.199 13 O -0.298 6.298 14 C 0.409 3.591 15 N -0.574 5.574 16 C 0.286 3.714 17 N -0.332 5.332 18 C 0.129 3.871 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.142 4.142 24 N -0.355 5.355 25 H 0.281 0.719 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.275 0.725 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.236 -1.501 -7.074 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.159 4.159 3 Si 0.750 3.250 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.160 1.160 7 C -0.579 4.579 8 H 0.065 0.935 9 C 0.141 3.859 10 H 0.079 0.921 11 C -0.097 4.097 12 Cl -0.173 7.173 13 O -0.199 6.199 14 C 0.093 3.907 15 N -0.310 5.310 16 C -0.008 4.008 17 N -0.120 5.120 18 C 0.037 3.963 19 C -0.156 4.156 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.163 4.163 24 N -0.198 5.198 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.290 0.710 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 23.445 -1.959 -6.948 24.531 hybrid contribution -0.543 0.516 0.204 0.777 sum 22.902 -1.443 -6.744 23.918 Atomic orbital electron populations 1.69941 1.07940 1.29522 1.47418 1.25716 0.95595 1.02434 0.92154 0.85997 0.80070 0.78610 0.80330 1.19195 1.18927 1.16040 1.20761 0.88316 0.94810 1.54001 0.93536 1.20647 0.92398 0.86535 0.86318 0.92060 1.25471 0.78888 1.05200 1.00126 1.98658 1.21580 1.98719 1.98344 1.86357 1.23405 1.45298 1.64857 1.22139 0.87995 0.88484 0.92057 1.70541 1.05707 1.26835 1.27946 1.26845 0.96963 0.88051 0.88911 1.47611 1.12054 1.13239 1.39051 1.18057 0.87408 0.95060 0.95796 1.21195 0.91189 1.01487 1.01731 1.21443 0.98761 0.95495 0.94930 1.21679 0.97742 0.94958 0.99778 1.21348 0.92844 1.01034 0.96657 1.21038 1.01023 0.94245 0.99958 1.78216 0.95634 1.19894 1.26099 0.90940 0.87361 0.88992 0.70982 0.82363 0.81304 0.82273 0.83421 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.92 13.96 21.45 0.30 -53.62 16 2 C 0.04 2.48 5.47 84.65 0.46 2.95 16 3 Si 0.93 41.94 26.99 68.60 1.85 43.79 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.24 -10.05 6.82 99.48 0.68 -9.37 16 7 C -0.54 -31.16 9.23 25.60 0.24 -30.92 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 9 C 0.20 9.84 1.94 29.85 0.06 9.89 16 10 H 0.06 3.06 4.42 -2.39 -0.01 3.05 16 11 C -0.03 -1.45 6.31 71.98 0.45 -1.00 16 12 Cl -0.20 -7.77 26.13 -2.72 -0.07 -7.84 16 13 O -0.30 -15.37 9.83 -91.82 -0.90 -16.27 16 14 C 0.41 18.53 7.94 180.55 1.43 19.97 16 15 N -0.57 -22.37 8.11 -316.27 -2.57 -24.93 16 16 C 0.29 8.14 11.97 180.27 2.16 10.30 16 17 N -0.33 -10.52 3.81 -191.30 -0.73 -11.25 16 18 C 0.13 3.15 6.70 38.10 0.26 3.40 16 19 C -0.14 -2.04 9.47 22.39 0.21 -1.83 16 20 C -0.09 -0.91 10.04 22.25 0.22 -0.69 16 21 C -0.12 -1.37 10.04 22.29 0.22 -1.15 16 22 C -0.10 -1.64 10.04 22.25 0.22 -1.41 16 23 C -0.14 -3.47 9.68 22.39 0.22 -3.26 16 24 N -0.36 -14.96 12.07 -174.91 -2.11 -17.07 16 25 H 0.28 15.22 8.31 -92.71 -0.77 14.44 16 26 H 0.11 4.43 8.14 -2.39 -0.02 4.41 16 27 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 28 H 0.27 3.97 7.09 -2.91 -0.02 3.95 16 29 H 0.16 1.40 6.80 -2.91 -0.02 1.38 16 30 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 31 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.11 3.25 7.74 -2.91 -0.02 3.22 16 Total: -1.00 -74.91 303.66 3.05 -71.86 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.12 Total: 9.07 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.16 Total: 6.25 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -5.11 Total: -106.87 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.90 Total: -16.27 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.85 Total: 43.79 kcal Atomic # 17 Polarization: -7.77 SS G_CDS: -0.07 Total: -7.84 kcal Total: -74.91 3.05 -71.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226195597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.479 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds