Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48503 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47337 * 300.00160 * 3 2 1 6 6 H 1.48501 * 109.47290 * 60.00003 * 3 2 1 7 7 C 1.37878 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99876 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47146 * 300.00385 * 9 7 2 11 11 C 1.53004 * 109.46757 * 60.00163 * 9 7 2 12 12 Cl 1.80304 * 109.46843 * 184.99715 * 11 9 7 13 13 O 1.42903 * 109.46819 * 180.02562 * 9 7 2 14 14 C 1.35588 * 116.99504 * 141.38485 * 13 9 7 15 15 C 1.37041 * 120.93561 * 5.57888 * 14 13 9 16 16 C 1.39602 * 119.83595 * 179.97438 * 15 14 13 17 17 O 1.35582 * 119.16021 * 179.97438 * 16 15 14 18 18 N 1.31712 * 121.68447 * 0.02562 * 16 15 14 19 19 C 1.33866 * 121.39802 * 0.02562 * 18 16 15 20 20 C 1.40514 * 120.98613 * 180.02562 * 19 18 16 21 21 C 1.36169 * 119.74552 * 179.17227 * 20 19 18 22 22 C 1.39247 * 121.01618 * 0.83211 * 21 20 19 23 23 C 1.36261 * 120.82647 * 359.44725 * 22 21 20 24 24 C 1.40190 * 119.64252 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00784 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47464 * 304.99973 * 11 9 7 27 27 H 1.08999 * 109.47202 * 65.00074 * 11 9 7 28 28 H 1.07998 * 120.08154 * 0.02562 * 15 14 13 29 29 H 0.96701 * 113.99723 * 89.99916 * 17 16 15 30 30 H 1.07994 * 120.12375 * 359.97058 * 20 19 18 31 31 H 1.08004 * 119.48623 * 180.25732 * 21 20 19 32 32 H 1.08000 * 119.58782 * 179.47521 * 22 21 20 33 33 H 1.07996 * 120.18073 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 17 -0.6394 -4.0714 -1.1773 13 8 2.1798 -3.5852 -0.0005 14 6 1.8623 -4.6665 0.7535 15 6 0.6503 -4.7520 1.3873 16 6 0.3471 -5.8762 2.1576 17 8 -0.8558 -5.9463 2.7791 18 7 1.2002 -6.8700 2.2967 19 6 2.4005 -6.8470 1.7044 20 6 3.3037 -7.9123 1.8582 21 6 4.5113 -7.8702 1.2306 22 6 4.8760 -6.7770 0.4489 23 6 4.0276 -5.7238 0.2823 24 6 2.7720 -5.7395 0.9055 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2765 -1.7043 -1.2951 27 1 1.0024 -2.6114 -2.1375 28 1 -0.0688 -3.9521 1.2906 29 1 -1.5493 -6.3611 2.2480 30 1 3.0358 -8.7671 2.4615 31 1 5.2007 -8.6932 1.3484 32 1 5.8431 -6.7639 -0.0316 33 1 4.3213 -4.8810 -0.3259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226492855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -37.143644 kcal Electronic energy + Delta-G solvation = -20967.624889 eV Core-core repulsion = 17598.756661 eV Total energy + Delta-G solvation = -3368.868227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76023 -38.37243 -37.97692 -35.34496 -35.02508 -33.73028 -32.08129 -29.87363 -29.62660 -29.02778 -25.48892 -23.86582 -23.30109 -21.96384 -20.95180 -18.80659 -17.83291 -17.60221 -16.78249 -16.28066 -15.36967 -14.86073 -14.80026 -14.49112 -14.25402 -13.87104 -13.65812 -13.32172 -13.27796 -12.77100 -12.18464 -12.03104 -11.60095 -11.36806 -11.22746 -11.18709 -11.13956 -11.07332 -10.95849 -10.42131 -10.00445 -9.69277 -9.52117 -9.15940 -8.96965 -8.79047 -8.37101 -7.51112 -6.56170 -4.65227 0.79838 1.07181 2.35598 3.03408 3.12539 3.14126 3.18669 3.23594 3.70051 3.90259 4.14286 4.39578 4.80196 4.90032 5.00557 5.09597 5.23203 5.43650 5.58635 5.73845 5.82217 6.02763 6.06642 6.08822 6.22505 6.36587 6.49856 6.58539 6.68650 6.74707 6.95898 7.05451 7.39543 7.58125 7.75549 8.00026 8.26563 8.48701 9.03311 10.50872 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.005668 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.882130 B = 4938.576362 C = 5739.519738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.527 4.527 8 H 0.079 0.921 9 C 0.202 3.798 10 H 0.057 0.943 11 C -0.033 4.033 12 Cl -0.241 7.241 13 O -0.294 6.294 14 C 0.231 3.769 15 C -0.291 4.291 16 C 0.380 3.620 17 O -0.484 6.484 18 N -0.541 5.541 19 C 0.180 3.820 20 C -0.115 4.115 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.057 4.057 24 C -0.138 4.138 25 H 0.274 0.726 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.400 0.600 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -9.579 -0.566 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.097 0.903 9 C 0.148 3.852 10 H 0.074 0.926 11 C -0.096 4.096 12 Cl -0.216 7.216 13 O -0.203 6.203 14 C 0.174 3.826 15 C -0.313 4.313 16 C 0.190 3.810 17 O -0.291 6.291 18 N -0.265 5.265 19 C 0.058 3.942 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.169 4.169 23 C -0.075 4.075 24 C -0.141 4.141 25 H 0.084 0.916 26 H 0.155 0.845 27 H 0.096 0.904 28 H 0.174 0.826 29 H 0.257 0.743 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.535 -9.903 0.237 10.517 hybrid contribution -0.161 1.436 -0.815 1.659 sum 3.374 -8.467 -0.578 9.133 Atomic orbital electron populations 1.69782 1.06036 1.28282 1.48197 1.24985 0.95217 0.99938 0.93675 0.86095 0.79987 0.81424 0.78093 1.19210 1.20392 1.20373 1.21052 0.94442 0.87633 1.53300 0.90309 1.20766 0.87362 0.82433 0.94661 0.92576 1.25752 0.95362 0.86820 1.01657 1.98642 1.75878 1.48078 1.98982 1.86064 1.49518 1.24000 1.60763 1.18936 0.90499 0.86780 0.86362 1.22001 1.00349 1.03443 1.05521 1.18945 0.86406 0.88428 0.87238 1.84685 1.17379 1.82492 1.44546 1.67520 1.04058 1.29445 1.25513 1.18287 0.90586 0.92681 0.92627 1.20614 0.93215 0.97884 1.01658 1.20834 0.96027 0.98025 0.96015 1.20778 1.00240 0.94475 1.01379 1.20980 0.91766 0.98312 0.96473 1.18381 0.96250 0.95171 1.04320 0.91626 0.84492 0.90419 0.82565 0.74251 0.85025 0.85745 0.85864 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.18 11.29 55.43 0.63 -21.55 16 2 C 0.07 1.61 5.29 -17.82 -0.09 1.51 16 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.53 -13.08 8.89 -34.44 -0.31 -13.38 16 8 H 0.08 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.20 4.66 2.15 -27.88 -0.06 4.60 16 10 H 0.06 1.39 5.53 -51.93 -0.29 1.10 16 11 C -0.03 -0.72 6.17 37.16 0.23 -0.49 16 12 Cl -0.24 -4.70 25.77 -51.86 -1.34 -6.04 16 13 O -0.29 -6.40 8.99 -18.46 -0.17 -6.57 16 14 C 0.23 4.68 6.23 -38.78 -0.24 4.44 16 15 C -0.29 -5.77 7.20 -39.51 -0.28 -6.05 16 16 C 0.38 7.09 7.71 -17.09 -0.13 6.96 16 17 O -0.48 -7.86 13.54 -18.44 -0.25 -8.11 16 18 N -0.54 -10.15 10.37 -11.14 -0.12 -10.26 16 19 C 0.18 3.21 6.60 -84.87 -0.56 2.65 16 20 C -0.11 -1.66 9.98 -39.47 -0.39 -2.05 16 21 C -0.09 -1.09 9.94 -39.95 -0.40 -1.49 16 22 C -0.15 -1.95 9.96 -39.92 -0.40 -2.35 16 23 C -0.06 -0.90 9.58 -39.56 -0.38 -1.28 16 24 C -0.14 -2.56 5.75 -106.68 -0.61 -3.17 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 26 H 0.14 3.17 5.95 -51.93 -0.31 2.86 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.16 3.25 4.91 -52.49 -0.26 2.99 16 29 H 0.40 4.45 9.06 45.56 0.41 4.86 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 2.10 7.66 -52.49 -0.40 1.70 16 LS Contribution 297.82 15.07 4.49 4.49 Total: -1.00 -27.30 297.82 -7.48 -34.79 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -2.08 Total: 9.16 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.63 Total: -10.10 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.51 Total: -31.81 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.42 Total: -14.68 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 17 Polarization: -4.70 SS G_CDS: -1.34 Total: -6.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.30 -7.48 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226492855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.355 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds