Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48503 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47337 * 300.00160 * 3 2 1 6 6 H 1.48501 * 109.47290 * 60.00003 * 3 2 1 7 7 C 1.37878 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99876 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47146 * 300.00385 * 9 7 2 11 11 C 1.53004 * 109.46757 * 60.00163 * 9 7 2 12 12 Cl 1.80304 * 109.46843 * 184.99715 * 11 9 7 13 13 O 1.42903 * 109.46819 * 180.02562 * 9 7 2 14 14 C 1.35588 * 116.99504 * 141.38485 * 13 9 7 15 15 C 1.37041 * 120.93561 * 5.57888 * 14 13 9 16 16 C 1.39602 * 119.83595 * 179.97438 * 15 14 13 17 17 O 1.35582 * 119.16021 * 179.97438 * 16 15 14 18 18 N 1.31712 * 121.68447 * 0.02562 * 16 15 14 19 19 C 1.33866 * 121.39802 * 0.02562 * 18 16 15 20 20 C 1.40514 * 120.98613 * 180.02562 * 19 18 16 21 21 C 1.36169 * 119.74552 * 179.17227 * 20 19 18 22 22 C 1.39247 * 121.01618 * 0.83211 * 21 20 19 23 23 C 1.36261 * 120.82647 * 359.44725 * 22 21 20 24 24 C 1.40190 * 119.64252 * 0.02562 * 23 22 21 25 25 H 0.97000 * 120.00784 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.47464 * 304.99973 * 11 9 7 27 27 H 1.08999 * 109.47202 * 65.00074 * 11 9 7 28 28 H 1.07998 * 120.08154 * 0.02562 * 15 14 13 29 29 H 0.96701 * 113.99723 * 89.99916 * 17 16 15 30 30 H 1.07994 * 120.12375 * 359.97058 * 20 19 18 31 31 H 1.08004 * 119.48623 * 180.25732 * 21 20 19 32 32 H 1.08000 * 119.58782 * 179.47521 * 22 21 20 33 33 H 1.07996 * 120.18073 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 17 -0.6394 -4.0714 -1.1773 13 8 2.1798 -3.5852 -0.0005 14 6 1.8623 -4.6665 0.7535 15 6 0.6503 -4.7520 1.3873 16 6 0.3471 -5.8762 2.1576 17 8 -0.8558 -5.9463 2.7791 18 7 1.2002 -6.8700 2.2967 19 6 2.4005 -6.8470 1.7044 20 6 3.3037 -7.9123 1.8582 21 6 4.5113 -7.8702 1.2306 22 6 4.8760 -6.7770 0.4489 23 6 4.0276 -5.7238 0.2823 24 6 2.7720 -5.7395 0.9055 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2765 -1.7043 -1.2951 27 1 1.0024 -2.6114 -2.1375 28 1 -0.0688 -3.9521 1.2906 29 1 -1.5493 -6.3611 2.2480 30 1 3.0358 -8.7671 2.4615 31 1 5.2007 -8.6932 1.3484 32 1 5.8431 -6.7639 -0.0316 33 1 4.3213 -4.8810 -0.3259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226492855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -55.672607 kcal Electronic energy + Delta-G solvation = -20968.428365 eV Core-core repulsion = 17598.756661 eV Total energy + Delta-G solvation = -3369.671703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13650 -39.92203 -39.23689 -36.78859 -36.52347 -35.52040 -33.49630 -31.44900 -31.00713 -30.38810 -27.34938 -25.27933 -24.61058 -23.39399 -22.45734 -20.19482 -19.37646 -18.92027 -18.34105 -17.84163 -16.93036 -16.46475 -16.11684 -15.92824 -15.62505 -15.25666 -15.14353 -14.78711 -14.64051 -14.28250 -13.89362 -13.46979 -13.11935 -12.93352 -12.86040 -12.67679 -12.48500 -12.36209 -12.30848 -12.07917 -11.62191 -11.39944 -11.21837 -10.70889 -10.54367 -10.36358 -9.67321 -8.87278 -8.42375 -6.59213 -0.49175 -0.21893 1.03157 1.36069 1.42110 1.52725 1.54828 1.90185 2.10089 2.42101 2.61918 2.92409 3.09698 3.63112 3.71999 3.81711 4.05997 4.18437 4.28992 4.30837 4.43861 4.46447 4.59287 4.72260 4.86127 5.07339 5.11114 5.19154 5.35957 5.44224 5.51856 5.55332 5.74137 5.94026 6.28030 6.56856 6.62910 6.89252 7.13131 8.64333 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.005668 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.882130 B = 4938.576362 C = 5739.519738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.208 3.792 10 H 0.033 0.967 11 C -0.024 4.024 12 Cl -0.223 7.223 13 O -0.304 6.304 14 C 0.208 3.792 15 C -0.300 4.300 16 C 0.372 3.628 17 O -0.488 6.488 18 N -0.544 5.544 19 C 0.156 3.844 20 C -0.121 4.121 21 C -0.070 4.070 22 C -0.127 4.127 23 C -0.084 4.084 24 C -0.154 4.154 25 H 0.277 0.723 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.419 0.581 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.162 0.838 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -11.174 -0.663 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.588 4.588 8 H 0.088 0.912 9 C 0.154 3.846 10 H 0.051 0.949 11 C -0.087 4.087 12 Cl -0.197 7.197 13 O -0.214 6.214 14 C 0.153 3.847 15 C -0.322 4.322 16 C 0.181 3.819 17 O -0.298 6.298 18 N -0.269 5.269 19 C 0.035 3.965 20 C -0.140 4.140 21 C -0.089 4.089 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.157 4.157 25 H 0.087 0.913 26 H 0.139 0.861 27 H 0.100 0.900 28 H 0.157 0.843 29 H 0.281 0.719 30 H 0.169 0.831 31 H 0.191 0.809 32 H 0.179 0.821 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.475 -11.531 0.133 12.765 hybrid contribution -0.699 1.738 -0.755 2.019 sum 4.777 -9.793 -0.622 10.914 Atomic orbital electron populations 1.69869 1.07087 1.29144 1.48325 1.25715 0.95942 1.02637 0.92999 0.85186 0.78757 0.77675 0.78233 1.19083 1.19469 1.20227 1.21265 0.94283 0.88971 1.54235 0.91155 1.20493 0.87301 0.82614 0.94218 0.94924 1.25400 0.95120 0.87080 1.01086 1.98636 1.75285 1.46802 1.98980 1.86010 1.49311 1.24332 1.61728 1.19226 0.91506 0.87005 0.86999 1.21902 1.00146 1.03572 1.06608 1.18937 0.87236 0.88243 0.87471 1.84635 1.17331 1.82912 1.44910 1.67589 1.04574 1.29164 1.25584 1.18803 0.91018 0.93699 0.92982 1.20966 0.93419 0.97386 1.02218 1.21375 0.95518 0.98606 0.93446 1.21274 1.00720 0.92918 0.99516 1.21086 0.91728 0.99851 0.97660 1.18615 0.97071 0.94842 1.05185 0.91314 0.86067 0.90012 0.84251 0.71946 0.83059 0.80930 0.82056 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.38 11.29 21.45 0.24 -46.14 16 2 C 0.03 1.43 5.29 84.66 0.45 1.88 16 3 Si 0.98 39.57 29.54 68.60 2.03 41.60 16 4 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.55 -28.22 8.89 25.60 0.23 -27.99 16 8 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 10.06 2.15 29.85 0.06 10.13 16 10 H 0.03 1.73 5.53 -2.39 -0.01 1.72 16 11 C -0.02 -1.07 6.17 71.98 0.44 -0.63 16 12 Cl -0.22 -8.89 25.77 -2.72 -0.07 -8.96 16 13 O -0.30 -13.82 8.99 -88.97 -0.80 -14.62 16 14 C 0.21 8.76 6.23 22.79 0.14 8.91 16 15 C -0.30 -12.43 7.20 22.32 0.16 -12.27 16 16 C 0.37 14.20 7.71 85.04 0.66 14.85 16 17 O -0.49 -16.03 13.54 -88.91 -1.20 -17.24 16 18 N -0.54 -20.32 10.37 -302.34 -3.14 -23.46 16 19 C 0.16 5.42 6.60 40.20 0.27 5.69 16 20 C -0.12 -3.12 9.98 22.34 0.22 -2.90 16 21 C -0.07 -1.37 9.94 22.03 0.22 -1.15 16 22 C -0.13 -2.78 9.96 22.05 0.22 -2.56 16 23 C -0.08 -2.60 9.58 22.28 0.21 -2.39 16 24 C -0.15 -5.73 5.75 -21.19 -0.12 -5.85 16 25 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 26 H 0.12 5.81 5.95 -2.39 -0.01 5.80 16 27 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.14 6.17 4.91 -2.91 -0.01 6.16 16 29 H 0.42 9.35 9.06 -74.06 -0.67 8.68 16 30 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.13 4.02 7.66 -2.91 -0.02 4.00 16 Total: -1.00 -60.56 297.82 0.72 -59.83 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.50 Total: 23.25 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.16 Total: -14.27 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -2.89 Total: -69.60 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -2.00 Total: -31.85 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 17 Polarization: -8.89 SS G_CDS: -0.07 Total: -8.96 kcal Total: -60.56 0.72 -59.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226492855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.160 kcal (2) G-P(sol) polarization free energy of solvation -60.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds