Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47221 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47223 * 119.99826 * 3 2 1 6 6 H 1.48498 * 109.47150 * 239.99997 * 3 2 1 7 7 C 1.37877 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00030 * 186.05644 * 7 2 1 9 9 C 1.50695 * 119.99910 * 6.05026 * 7 2 1 10 10 H 1.09003 * 109.47073 * 35.31417 * 9 7 2 11 11 C 1.53004 * 109.47003 * 155.31128 * 9 7 2 12 12 Cl 1.80301 * 109.47265 * 185.72083 * 11 9 7 13 13 O 1.42893 * 109.47510 * 275.31343 * 9 7 2 14 14 C 1.35576 * 117.00321 * 150.00104 * 13 9 7 15 15 C 1.39980 * 119.21809 * 179.97438 * 14 13 9 16 16 C 1.36337 * 119.91540 * 179.97438 * 15 14 13 17 17 C 1.40903 * 118.29428 * 0.02562 * 16 15 14 18 18 C 1.40430 * 121.16497 * 180.02562 * 17 16 15 19 19 C 1.36017 * 119.85643 * 179.97438 * 18 17 16 20 20 C 1.39847 * 120.79510 * 0.02562 * 19 18 17 21 21 O 1.35831 * 119.61539 * 180.02562 * 20 19 18 22 22 C 1.37620 * 120.75923 * 359.97438 * 20 19 18 23 23 C 1.40401 * 119.62689 * 0.02562 * 22 20 19 24 24 N 1.31561 * 119.21328 * 359.72878 * 14 13 9 25 25 H 0.96992 * 120.00296 * 175.12762 * 1 2 3 26 26 H 1.08998 * 109.47313 * 305.72398 * 11 9 7 27 27 H 1.09007 * 109.46860 * 65.72200 * 11 9 7 28 28 H 1.07999 * 120.04249 * 359.97438 * 15 14 13 29 29 H 1.08001 * 120.85384 * 179.97438 * 16 15 14 30 30 H 1.08006 * 120.06971 * 359.96056 * 18 17 16 31 31 H 1.07991 * 119.60271 * 179.97438 * 19 18 17 32 32 H 0.96698 * 114.00416 * 90.00407 * 21 20 19 33 33 H 1.08002 * 120.18422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1967 0.0992 9 6 1.2573 -2.4955 -0.1364 10 1 0.4071 -2.3578 -0.8046 11 6 2.1913 -3.5617 -0.7126 12 17 1.2565 -5.0696 -1.0337 13 8 0.7909 -2.9145 1.1476 14 6 -0.3538 -3.6403 1.1800 15 6 -0.8523 -4.0754 2.4136 16 6 -2.0025 -4.8057 2.4628 17 6 -2.6581 -5.1016 1.2511 18 6 -3.8468 -5.8490 1.2317 19 6 -4.4578 -6.1187 0.0468 20 6 -3.9164 -5.6607 -1.1585 21 8 -4.5468 -5.9435 -2.3280 22 6 -2.7529 -4.9258 -1.1733 23 6 -2.1015 -4.6330 0.0356 24 7 -0.9721 -3.9150 0.0517 25 1 -0.4850 -0.8369 -0.0713 26 1 2.6264 -3.1987 -1.6437 27 1 2.9867 -3.7725 0.0022 28 1 -0.3265 -3.8327 3.3252 29 1 -2.4004 -5.1494 3.4061 30 1 -4.2748 -6.2090 2.1557 31 1 -5.3716 -6.6942 0.0366 32 1 -5.1982 -5.2802 -2.5941 33 1 -2.3431 -4.5764 -2.1094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226909833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -42.639362 kcal Electronic energy + Delta-G solvation = -20931.208846 eV Core-core repulsion = 17562.102307 eV Total energy + Delta-G solvation = -3369.106540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52580 -38.73956 -37.38594 -35.20813 -34.74245 -33.21345 -32.94942 -30.12785 -29.39588 -28.67337 -24.80702 -23.79373 -22.96741 -22.09674 -21.06002 -19.02919 -17.88238 -17.23347 -16.90231 -16.15578 -15.36174 -14.97629 -14.72016 -14.20945 -14.00253 -13.90304 -13.52121 -13.42012 -13.08932 -12.89775 -12.14142 -12.07741 -12.02165 -11.67194 -11.44569 -10.96086 -10.61687 -10.56877 -10.44371 -10.25127 -10.05186 -9.64641 -9.44985 -8.93594 -8.84442 -8.64976 -8.02906 -7.52260 -6.75299 -4.57518 0.71329 1.22642 2.32153 3.09966 3.17315 3.29017 3.31410 3.50098 3.97383 4.19240 4.31912 4.53950 4.74832 5.00650 5.09290 5.12985 5.22551 5.38038 5.48293 5.64533 5.86596 5.89188 6.02292 6.07962 6.15210 6.23720 6.33189 6.52245 6.58176 6.75686 6.80424 7.02017 7.58281 7.70089 8.04665 8.34895 8.47570 8.57912 9.23482 10.64064 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.005127 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.487894 B = 5459.775494 C = 5627.185289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.035 3.965 3 Si 1.076 2.924 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.599 4.599 8 H 0.064 0.936 9 C 0.182 3.818 10 H 0.072 0.928 11 C -0.028 4.028 12 Cl -0.208 7.208 13 O -0.303 6.303 14 C 0.371 3.629 15 C -0.182 4.182 16 C -0.039 4.039 17 C -0.158 4.158 18 C -0.063 4.063 19 C -0.170 4.170 20 C 0.121 3.879 21 O -0.500 6.500 22 C -0.131 4.131 23 C 0.195 3.805 24 N -0.520 5.520 25 H 0.278 0.722 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.389 0.611 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 -8.713 1.718 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.175 4.175 3 Si 0.902 3.098 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.636 4.636 8 H 0.082 0.918 9 C 0.129 3.871 10 H 0.089 0.911 11 C -0.091 4.091 12 Cl -0.182 7.182 13 O -0.207 6.207 14 C 0.178 3.822 15 C -0.203 4.203 16 C -0.064 4.064 17 C -0.161 4.161 18 C -0.082 4.082 19 C -0.189 4.189 20 C 0.075 3.925 21 O -0.310 6.310 22 C -0.151 4.151 23 C 0.072 3.928 24 N -0.248 5.248 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.658 -7.312 1.137 9.315 hybrid contribution -0.427 -1.717 0.550 1.853 sum -6.085 -9.029 1.687 11.018 Atomic orbital electron populations 1.70738 1.07027 1.32179 1.40771 1.26178 0.96318 1.03243 0.91746 0.83451 0.74959 0.74404 0.77018 1.20361 1.20919 1.20800 1.21877 0.94986 0.89574 1.57113 0.91784 1.20717 0.94289 0.90564 0.81495 0.91052 1.25098 0.96590 0.84600 1.02789 1.98679 1.78369 1.44334 1.96786 1.86855 1.33215 1.61920 1.38738 1.20445 0.87027 0.85967 0.88713 1.21067 0.98610 1.02771 0.97859 1.21152 0.93379 0.94702 0.97178 1.18716 0.98469 1.04611 0.94328 1.20701 0.93613 0.96146 0.97747 1.20920 1.01874 1.04287 0.91809 1.18287 0.92780 0.96394 0.85022 1.84784 1.57924 1.50596 1.37735 1.21151 0.96110 0.99961 0.97850 1.18271 0.90254 0.92592 0.91725 1.68025 1.09688 1.18825 1.28289 0.90986 0.88671 0.90117 0.84476 0.84488 0.85550 0.85727 0.75522 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.25 13.63 55.43 0.76 -24.49 16 2 C 0.04 0.95 5.45 -17.82 -0.10 0.85 16 3 Si 1.08 23.33 29.91 -169.99 -5.08 18.25 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.60 -15.81 8.69 -34.44 -0.30 -16.11 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.18 4.50 1.79 -27.88 -0.05 4.45 16 10 H 0.07 1.92 5.79 -51.93 -0.30 1.62 16 11 C -0.03 -0.58 6.31 37.16 0.23 -0.35 16 12 Cl -0.21 -4.24 25.95 -51.86 -1.35 -5.58 16 13 O -0.30 -7.40 9.72 -18.42 -0.18 -7.58 16 14 C 0.37 8.10 6.68 -17.02 -0.11 7.99 16 15 C -0.18 -3.28 9.95 -39.61 -0.39 -3.67 16 16 C -0.04 -0.60 9.87 -39.26 -0.39 -0.99 16 17 C -0.16 -2.60 5.74 -106.76 -0.61 -3.22 16 18 C -0.06 -0.84 9.75 -39.55 -0.39 -1.22 16 19 C -0.17 -2.22 9.89 -39.78 -0.39 -2.61 16 20 C 0.12 1.78 6.68 -39.21 -0.26 1.52 16 21 O -0.50 -6.33 13.47 -19.21 -0.26 -6.59 16 22 C -0.13 -2.29 9.94 -38.99 -0.39 -2.67 16 23 C 0.19 3.73 6.60 -84.87 -0.56 3.17 16 24 N -0.52 -11.28 6.27 -11.07 -0.07 -11.35 16 25 H 0.28 8.22 6.80 -40.82 -0.28 7.94 16 26 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.39 2.98 9.06 45.56 0.41 3.40 16 33 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -31.17 303.66 -7.65 -38.81 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.33 Total: 6.83 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.71 Total: -12.87 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.69 Total: -35.85 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.44 Total: -14.17 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.08 Total: 18.25 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -1.35 Total: -5.58 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.17 -7.65 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226909833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.825 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds