Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47221 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47223 * 119.99826 * 3 2 1 6 6 H 1.48498 * 109.47150 * 239.99997 * 3 2 1 7 7 C 1.37877 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00030 * 186.05644 * 7 2 1 9 9 C 1.50695 * 119.99910 * 6.05026 * 7 2 1 10 10 H 1.09003 * 109.47073 * 35.31417 * 9 7 2 11 11 C 1.53004 * 109.47003 * 155.31128 * 9 7 2 12 12 Cl 1.80301 * 109.47265 * 185.72083 * 11 9 7 13 13 O 1.42893 * 109.47510 * 275.31343 * 9 7 2 14 14 C 1.35576 * 117.00321 * 150.00104 * 13 9 7 15 15 C 1.39980 * 119.21809 * 179.97438 * 14 13 9 16 16 C 1.36337 * 119.91540 * 179.97438 * 15 14 13 17 17 C 1.40903 * 118.29428 * 0.02562 * 16 15 14 18 18 C 1.40430 * 121.16497 * 180.02562 * 17 16 15 19 19 C 1.36017 * 119.85643 * 179.97438 * 18 17 16 20 20 C 1.39847 * 120.79510 * 0.02562 * 19 18 17 21 21 O 1.35831 * 119.61539 * 180.02562 * 20 19 18 22 22 C 1.37620 * 120.75923 * 359.97438 * 20 19 18 23 23 C 1.40401 * 119.62689 * 0.02562 * 22 20 19 24 24 N 1.31561 * 119.21328 * 359.72878 * 14 13 9 25 25 H 0.96992 * 120.00296 * 175.12762 * 1 2 3 26 26 H 1.08998 * 109.47313 * 305.72398 * 11 9 7 27 27 H 1.09007 * 109.46860 * 65.72200 * 11 9 7 28 28 H 1.07999 * 120.04249 * 359.97438 * 15 14 13 29 29 H 1.08001 * 120.85384 * 179.97438 * 16 15 14 30 30 H 1.08006 * 120.06971 * 359.96056 * 18 17 16 31 31 H 1.07991 * 119.60271 * 179.97438 * 19 18 17 32 32 H 0.96698 * 114.00416 * 90.00407 * 21 20 19 33 33 H 1.08002 * 120.18422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1967 0.0992 9 6 1.2573 -2.4955 -0.1364 10 1 0.4071 -2.3578 -0.8046 11 6 2.1913 -3.5617 -0.7126 12 17 1.2565 -5.0696 -1.0337 13 8 0.7909 -2.9145 1.1476 14 6 -0.3538 -3.6403 1.1800 15 6 -0.8523 -4.0754 2.4136 16 6 -2.0025 -4.8057 2.4628 17 6 -2.6581 -5.1016 1.2511 18 6 -3.8468 -5.8490 1.2317 19 6 -4.4578 -6.1187 0.0468 20 6 -3.9164 -5.6607 -1.1585 21 8 -4.5468 -5.9435 -2.3280 22 6 -2.7529 -4.9258 -1.1733 23 6 -2.1015 -4.6330 0.0356 24 7 -0.9721 -3.9150 0.0517 25 1 -0.4850 -0.8369 -0.0713 26 1 2.6264 -3.1987 -1.6437 27 1 2.9867 -3.7725 0.0022 28 1 -0.3265 -3.8327 3.3252 29 1 -2.4004 -5.1494 3.4061 30 1 -4.2748 -6.2090 2.1557 31 1 -5.3716 -6.6942 0.0366 32 1 -5.1982 -5.2802 -2.5941 33 1 -2.3431 -4.5764 -2.1094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226909833.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = -64.304542 kcal Electronic energy + Delta-G solvation = -20932.148319 eV Core-core repulsion = 17562.102307 eV Total energy + Delta-G solvation = -3370.046012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86023 -40.14227 -38.77879 -36.78197 -36.17446 -35.09149 -34.25690 -31.89037 -30.66719 -30.01377 -26.76428 -25.21394 -24.28300 -23.44419 -22.68520 -20.23084 -19.59347 -18.90036 -18.12809 -17.52492 -16.86013 -16.45284 -16.08805 -15.74896 -15.64686 -15.34598 -14.97885 -14.68754 -14.41843 -14.30193 -13.84139 -13.79112 -13.34090 -13.19743 -12.77100 -12.67970 -12.26328 -12.01703 -11.93287 -11.65907 -11.38109 -11.30423 -11.14554 -10.81270 -10.65634 -10.22725 -9.27293 -8.95754 -8.86397 -6.68946 -0.50285 -0.06829 1.06888 1.39455 1.54588 1.60132 1.80935 1.94047 2.36172 2.53587 3.01344 3.16734 3.25753 3.56425 3.80275 3.91395 3.99097 4.07089 4.13299 4.19805 4.34795 4.40513 4.58903 4.80860 4.88721 4.93534 4.98083 5.07817 5.34435 5.38871 5.56420 5.63265 5.75924 5.95948 6.29178 6.70871 6.79284 7.11573 7.21708 8.51823 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.005127 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.487894 B = 5459.775494 C = 5627.185289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.013 4.013 3 Si 1.124 2.876 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.615 4.615 8 H 0.069 0.931 9 C 0.188 3.812 10 H 0.039 0.961 11 C -0.022 4.022 12 Cl -0.200 7.200 13 O -0.326 6.326 14 C 0.337 3.663 15 C -0.209 4.209 16 C -0.012 4.012 17 C -0.172 4.172 18 C -0.047 4.047 19 C -0.164 4.164 20 C 0.142 3.858 21 O -0.506 6.506 22 C -0.171 4.171 23 C 0.162 3.838 24 N -0.550 5.550 25 H 0.260 0.740 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.151 0.849 29 H 0.192 0.808 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.413 0.587 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 -10.391 3.097 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.215 4.215 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.652 4.652 8 H 0.088 0.912 9 C 0.134 3.866 10 H 0.056 0.944 11 C -0.085 4.085 12 Cl -0.174 7.174 13 O -0.232 6.232 14 C 0.146 3.854 15 C -0.230 4.230 16 C -0.037 4.037 17 C -0.174 4.174 18 C -0.065 4.065 19 C -0.183 4.183 20 C 0.096 3.904 21 O -0.320 6.320 22 C -0.191 4.191 23 C 0.040 3.960 24 N -0.278 5.278 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.209 0.791 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.273 0.727 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.339 -9.021 2.495 11.894 hybrid contribution -0.158 -1.432 0.039 1.441 sum -7.497 -10.453 2.534 13.111 Atomic orbital electron populations 1.70863 1.08198 1.31015 1.44118 1.27683 0.96256 1.07017 0.90578 0.82876 0.74119 0.70194 0.78507 1.20932 1.19140 1.18523 1.22233 0.95475 0.90730 1.56730 0.91231 1.20422 0.93478 0.91387 0.81327 0.94357 1.24934 0.95946 0.84289 1.03281 1.98673 1.78402 1.43557 1.96732 1.86667 1.35198 1.63710 1.37672 1.20769 0.86807 0.87339 0.90490 1.21251 1.00390 1.04585 0.96735 1.21709 0.91318 0.91828 0.98820 1.19087 0.99804 1.04913 0.93606 1.21202 0.91561 0.93876 0.99870 1.21337 1.02777 1.03512 0.90647 1.18443 0.91468 0.94048 0.86463 1.84711 1.58535 1.51514 1.37199 1.21135 0.98226 1.02959 0.96788 1.18653 0.90246 0.93392 0.93670 1.67865 1.11159 1.19758 1.28992 0.92940 0.87738 0.89048 0.83152 0.79129 0.80711 0.81882 0.72663 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.07 13.63 21.45 0.29 -54.78 16 2 C -0.01 -0.71 5.45 84.65 0.46 -0.24 16 3 Si 1.12 47.60 29.91 68.60 2.05 49.65 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.62 -33.65 8.69 25.60 0.22 -33.43 16 8 H 0.07 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.19 9.76 1.79 29.85 0.05 9.82 16 10 H 0.04 2.23 5.79 -2.39 -0.01 2.22 16 11 C -0.02 -0.94 6.31 71.98 0.45 -0.49 16 12 Cl -0.20 -8.43 25.95 -2.72 -0.07 -8.50 16 13 O -0.33 -16.83 9.72 -88.83 -0.86 -17.69 16 14 C 0.34 15.43 6.68 85.16 0.57 16.00 16 15 C -0.21 -7.51 9.95 22.25 0.22 -7.29 16 16 C -0.01 -0.34 9.87 22.48 0.22 -0.12 16 17 C -0.17 -5.26 5.74 -21.25 -0.12 -5.38 16 18 C -0.05 -1.01 9.75 22.29 0.22 -0.79 16 19 C -0.16 -3.54 9.89 22.14 0.22 -3.32 16 20 C 0.14 3.91 6.68 22.51 0.15 4.06 16 21 O -0.51 -11.67 13.47 -91.65 -1.23 -12.90 16 22 C -0.17 -6.12 9.94 22.65 0.23 -5.90 16 23 C 0.16 6.34 6.60 40.21 0.27 6.61 16 24 N -0.55 -25.16 6.27 -302.20 -1.90 -27.05 16 25 H 0.26 16.47 6.80 -92.71 -0.63 15.84 16 26 H 0.10 4.27 8.14 -2.39 -0.02 4.25 16 27 H 0.09 3.75 8.14 -2.38 -0.02 3.73 16 28 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.16 2.35 8.06 -2.92 -0.02 2.32 16 32 H 0.41 5.33 9.06 -74.06 -0.67 4.66 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -73.44 303.66 2.06 -71.37 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.63 Total: 20.38 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.16 Total: -20.48 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.60 Total: -81.83 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -2.10 Total: -30.60 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.05 Total: 49.65 kcal Atomic # 17 Polarization: -8.43 SS G_CDS: -0.07 Total: -8.50 kcal Total: -73.44 2.06 -71.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226909833.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.069 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds