Wall clock time and date at job start Tue Mar 31 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 120.00289 * 2 1 4 4 C 1.46833 * 119.99758 * 180.02562 * 2 1 3 5 5 C 1.39656 * 120.15057 * 5.55457 * 4 2 1 6 6 C 1.39214 * 119.72599 * 180.27788 * 5 4 2 7 7 C 1.43193 * 119.98558 * 179.75123 * 6 5 4 8 8 N 5.93956 * 85.05798 * 183.04932 * 2 1 3 9 9 C 1.40048 * 120.02627 * 359.76657 * 6 5 4 10 10 C 1.37658 * 120.30739 * 0.02562 * 9 6 5 11 11 C 1.38891 * 120.27350 * 359.97220 * 10 9 6 12 12 O 1.35476 * 120.01835 * 180.02562 * 11 10 9 13 13 C 1.42901 * 116.99925 * 5.64377 * 12 11 10 14 14 H 1.09002 * 109.46752 * 21.73229 * 13 12 11 15 15 C 1.50701 * 109.47139 * 141.73438 * 13 12 11 16 16 H 1.07993 * 119.99983 * 0.02562 * 15 13 12 17 17 C 1.37872 * 119.99561 * 179.97438 * 15 13 12 18 18 N 1.31516 * 119.99613 * 180.02562 * 17 15 13 19 19 Si 1.86801 * 120.00376 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.47010 * 269.99879 * 19 17 15 21 21 H 1.48494 * 109.47118 * 30.00091 * 19 17 15 22 22 H 1.48505 * 109.47065 * 150.00128 * 19 17 15 23 23 C 1.52999 * 109.46706 * 261.73473 * 13 12 11 24 24 Cl 1.80299 * 109.47153 * 65.00330 * 23 13 12 25 25 H 1.08999 * 109.47243 * 174.91843 * 1 2 3 26 26 H 1.08997 * 109.47350 * 294.92208 * 1 2 3 27 27 H 1.08998 * 109.47153 * 54.91689 * 1 2 3 28 28 H 1.08000 * 120.13431 * 0.02906 * 5 4 2 29 29 H 1.08001 * 119.84910 * 179.97438 * 9 6 5 30 30 H 1.07996 * 119.86474 * 179.97438 * 10 9 6 31 31 H 0.97008 * 119.99981 * 180.02562 * 18 17 15 32 32 H 1.09007 * 109.46823 * 184.99746 * 23 13 12 33 33 H 1.08994 * 109.47309 * 304.99524 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2411 -1.2716 -0.0006 5 6 1.5509 -2.4800 -0.1180 6 6 2.2553 -3.6808 -0.1117 7 6 1.5527 -4.9232 -0.2264 8 7 0.9953 -5.9091 -0.3148 9 6 3.6507 -3.6741 0.0071 10 6 4.3327 -2.4835 0.1186 11 6 3.6426 -1.2782 0.1137 12 8 4.3190 -0.1095 0.2232 13 6 5.7461 -0.1827 0.2154 14 1 6.0595 -1.1149 -0.2548 15 6 6.3047 0.9832 -0.5591 16 1 5.6368 1.7078 -1.0007 17 6 7.6685 1.1252 -0.7029 18 7 8.1560 2.1429 -1.3783 19 14 8.8239 -0.1278 0.0617 20 1 9.1750 0.2990 1.4400 21 1 8.1557 -1.4531 0.1089 22 1 10.0596 -0.2254 -0.7562 23 6 6.2670 -0.1364 1.6532 24 17 5.7187 -1.6081 2.5388 25 1 -0.3634 -1.0236 -0.0910 26 1 -0.3634 0.4330 0.9319 27 1 -0.3633 0.5907 -0.8409 28 1 0.4748 -2.4831 -0.2093 29 1 4.1942 -4.6073 0.0121 30 1 5.4087 -2.4867 0.2102 31 1 9.1156 2.2427 -1.4798 32 1 7.3565 -0.1027 1.6441 33 1 5.8802 0.7526 2.1513 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226975835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:28 Heat of formation + Delta-G solvation = -35.761466 kcal Electronic energy + Delta-G solvation = -20811.718704 eV Core-core repulsion = 17442.910412 eV Total energy + Delta-G solvation = -3368.808292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65173 -39.76218 -39.04243 -37.22032 -36.84677 -35.33354 -33.24987 -32.62695 -31.25244 -30.06239 -27.19961 -25.22121 -24.80574 -23.01152 -21.37706 -19.44472 -19.18128 -18.79447 -17.57487 -16.99478 -16.52459 -16.31309 -16.02225 -15.69717 -15.27080 -15.05995 -14.97690 -14.86207 -14.81331 -14.50225 -14.20336 -13.53368 -13.44614 -13.32811 -13.08663 -12.85641 -12.83224 -12.60296 -12.41050 -12.38964 -11.92508 -11.61705 -11.30976 -11.19677 -10.86564 -10.52038 -10.12781 -9.19942 -8.48996 -6.61771 -0.33497 -0.04642 1.16353 1.22592 1.28722 1.38446 1.39584 1.65993 2.07709 2.13389 2.25542 2.81580 2.84652 2.88505 3.19169 3.73345 3.81118 3.87002 3.95919 4.04069 4.20367 4.31969 4.46583 4.58504 4.70787 4.76139 4.82941 4.98135 5.09924 5.12360 5.24967 5.37531 5.51363 5.92257 6.43970 6.50269 6.60237 6.79788 7.01985 8.67235 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.005919 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.733319 B = 4729.075179 C = 5552.115693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.384 3.616 3 O -0.492 6.492 4 C -0.235 4.235 5 C 0.036 3.964 6 C -0.093 4.093 7 C 0.293 3.707 8 N -0.464 5.464 9 C 0.012 3.988 10 C -0.228 4.228 11 C 0.203 3.797 12 O -0.284 6.284 13 C 0.184 3.816 14 H 0.064 0.936 15 C -0.541 4.541 16 H 0.040 0.960 17 C 0.033 3.967 18 N -0.924 5.924 19 Si 0.921 3.079 20 H -0.249 1.249 21 H -0.228 1.228 22 H -0.278 1.278 23 C -0.051 4.051 24 Cl -0.190 7.190 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.186 0.814 29 H 0.163 0.837 30 H 0.143 0.857 31 H 0.278 0.722 32 H 0.092 0.908 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -11.312 5.213 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.264 3.736 3 O -0.370 6.370 4 C -0.237 4.237 5 C 0.016 3.984 6 C -0.097 4.097 7 C -0.021 4.021 8 N -0.140 5.140 9 C -0.008 4.008 10 C -0.246 4.246 11 C 0.152 3.848 12 O -0.194 6.194 13 C 0.128 3.872 14 H 0.081 0.919 15 C -0.578 4.578 16 H 0.058 0.942 17 C -0.168 4.168 18 N -0.561 5.561 19 Si 0.743 3.257 20 H -0.175 1.175 21 H -0.151 1.151 22 H -0.204 1.204 23 C -0.113 4.113 24 Cl -0.164 7.164 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.203 0.797 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.783 -12.065 5.091 16.963 hybrid contribution 1.473 0.520 0.157 1.570 sum -9.310 -11.546 5.248 15.733 Atomic orbital electron populations 1.22257 0.89733 1.06780 1.05795 1.22953 0.93518 0.86611 0.70510 1.90679 1.73213 1.35470 1.37658 1.20066 0.90411 0.96937 1.16298 1.21562 1.01383 0.87435 0.88065 1.15656 0.92229 0.86727 1.15122 1.25372 0.92501 0.92217 0.92006 1.81289 1.09602 1.11600 1.11527 1.21303 0.92045 0.98389 0.89051 1.21442 1.01890 0.91479 1.09797 1.20168 0.92129 0.86077 0.86401 1.86313 1.21291 1.28293 1.83504 1.20769 0.76041 0.99083 0.91344 0.91921 1.20870 0.92659 1.10296 1.33982 0.94169 1.25703 0.98968 0.97328 0.94798 1.69968 1.14545 1.30893 1.40678 0.86258 0.79128 0.81041 0.79258 1.17472 1.15120 1.20423 1.25831 1.01559 0.88990 0.94968 1.98662 1.92029 1.45833 1.79827 0.86829 0.87627 0.88233 0.79720 0.81981 0.83958 0.91254 0.88986 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 10.19 71.24 0.73 -2.26 16 2 C 0.38 11.12 7.20 27.94 0.20 11.32 16 3 O -0.49 -20.43 15.91 17.90 0.28 -20.15 16 4 C -0.24 -6.44 5.88 -20.11 -0.12 -6.56 16 5 C 0.04 0.65 9.14 22.85 0.21 0.86 16 6 C -0.09 -1.79 5.73 -21.36 -0.12 -1.91 16 7 C 0.29 5.94 15.32 88.33 1.35 7.29 16 8 N -0.46 -11.40 18.54 19.00 0.35 -11.05 16 9 C 0.01 0.26 9.73 22.57 0.22 0.48 16 10 C -0.23 -6.45 7.16 22.29 0.16 -6.29 16 11 C 0.20 6.90 6.24 23.01 0.14 7.04 16 12 O -0.28 -12.41 7.75 -66.81 -0.52 -12.93 16 13 C 0.18 8.08 1.74 29.85 0.05 8.14 16 14 H 0.06 2.59 4.53 -2.39 -0.01 2.58 16 15 C -0.54 -29.71 9.47 25.60 0.24 -29.47 16 16 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 17 C 0.03 1.78 5.45 84.65 0.46 2.24 16 18 N -0.92 -53.90 13.96 21.45 0.30 -53.60 16 19 Si 0.92 37.90 24.41 68.60 1.67 39.57 16 20 H -0.25 -9.55 6.83 99.48 0.68 -8.87 16 21 H -0.23 -8.27 6.53 99.48 0.65 -7.62 16 22 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 23 C -0.05 -1.97 5.83 71.98 0.42 -1.55 16 24 Cl -0.19 -6.08 25.65 -2.72 -0.07 -6.15 16 25 H 0.11 0.92 5.62 -2.39 -0.01 0.91 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.19 1.77 5.94 -2.91 -0.02 1.75 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.14 4.25 4.80 -2.91 -0.01 4.23 16 31 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 32 H 0.09 3.53 3.21 -2.38 -0.01 3.52 16 33 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 Total: -1.00 -70.29 298.70 7.07 -63.22 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.10 Total: 11.75 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.95 Total: -10.67 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 0.65 Total: -64.65 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.23 Total: -33.07 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.67 Total: 39.57 kcal Atomic # 17 Polarization: -6.08 SS G_CDS: -0.07 Total: -6.15 kcal Total: -70.29 7.07 -63.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226975835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.462 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds