Wall clock time and date at job start Tue Mar 31 2020 06:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47051 * 270.00005 * 3 2 1 5 5 H 1.48506 * 109.47067 * 30.00154 * 3 2 1 6 6 H 1.48503 * 109.47254 * 149.99746 * 3 2 1 7 7 C 1.37875 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00675 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47126 * 300.00891 * 9 7 2 11 11 C 1.53002 * 109.46737 * 59.99974 * 9 7 2 12 12 Cl 1.80301 * 109.47304 * 185.00379 * 11 9 7 13 13 O 1.42897 * 109.47747 * 180.02562 * 9 7 2 14 14 C 1.35822 * 117.00325 * 147.42228 * 13 9 7 15 15 C 1.36628 * 120.17933 * 356.68300 * 14 13 9 16 16 C 1.39194 * 120.99618 * 180.02562 * 15 14 13 17 17 C 1.36207 * 120.93976 * 359.97384 * 16 15 14 18 18 C 1.40420 * 119.72813 * 0.02562 * 17 16 15 19 19 C 1.40792 * 121.36502 * 179.97438 * 18 17 16 20 20 C 1.36564 * 118.17313 * 180.02562 * 19 18 17 21 21 C 1.39317 * 119.94418 * 0.02562 * 20 19 18 22 22 N 1.31191 * 121.72473 * 0.02562 * 21 20 19 23 23 O 1.41602 * 119.34891 * 179.69725 * 22 21 20 24 24 C 1.33698 * 121.30028 * 359.97438 * 22 21 20 25 25 H 0.96998 * 119.99423 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47524 * 305.00457 * 11 9 7 27 27 H 1.08996 * 109.47125 * 65.00275 * 11 9 7 28 28 H 1.07998 * 119.50057 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.52633 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.13724 * 180.02562 * 17 16 15 31 31 H 1.08001 * 120.91375 * 0.04254 * 19 18 17 32 32 H 1.08001 * 120.03190 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.14078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 17 -0.6396 -4.0713 -1.1773 13 8 2.1796 -3.5854 -0.0005 14 6 1.8051 -4.7167 0.6511 15 6 0.6182 -4.7595 1.3264 16 6 0.2180 -5.9098 2.0004 17 6 0.9986 -7.0260 2.0052 18 6 2.2256 -7.0206 1.3223 19 6 3.0597 -8.1547 1.3050 20 6 4.2391 -8.0774 0.6209 21 6 4.5870 -6.8980 -0.0341 22 7 3.8078 -5.8427 -0.0152 23 8 4.2142 -4.6678 -0.6931 24 6 2.6402 -5.8529 0.6361 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2765 -1.7042 -1.2950 27 1 1.0023 -2.6114 -2.1374 28 1 -0.0187 -3.8874 1.3382 29 1 -0.7253 -5.9176 2.5263 30 1 0.6752 -7.9116 2.5320 31 1 2.7745 -9.0610 1.8185 32 1 4.9019 -8.9294 0.5884 33 1 5.5230 -6.8510 -0.5709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227001459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:42 Heat of formation + Delta-G solvation = 38.623512 kcal Electronic energy + Delta-G solvation = -21280.972515 eV Core-core repulsion = 17915.389798 eV Total energy + Delta-G solvation = -3365.582717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39074 -38.72462 -36.72430 -34.95427 -34.25786 -33.30578 -30.85177 -30.17518 -29.33026 -28.49195 -25.30841 -24.42636 -24.08328 -22.27183 -20.82435 -18.49549 -17.85115 -17.32657 -16.58450 -16.11015 -15.42214 -15.08214 -14.89407 -14.42897 -14.35046 -14.07176 -13.57141 -13.33839 -12.70702 -12.22267 -12.12658 -11.95478 -11.81059 -11.46197 -11.29337 -11.06221 -11.02429 -10.77338 -10.55302 -10.23551 -9.68931 -9.44236 -9.19193 -8.86386 -8.70450 -8.61454 -8.22483 -7.17912 -6.40520 -4.45981 0.37614 0.66238 2.01234 2.86381 2.89834 3.17164 3.25141 3.30024 3.38022 3.81594 4.02125 4.26374 4.46454 4.68146 4.78034 4.81957 4.95639 5.05193 5.22425 5.39732 5.54630 5.68482 5.82787 6.01505 6.05833 6.24118 6.25378 6.43114 6.61572 6.74256 6.82333 7.10963 7.13231 7.54813 7.60709 7.77347 8.25894 8.72867 9.20982 10.67068 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.005800 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.509996 B = 4826.698787 C = 5554.523248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.195 3.805 10 H 0.052 0.948 11 C -0.033 4.033 12 Cl -0.245 7.245 13 O -0.246 6.246 14 C 0.206 3.794 15 C -0.215 4.215 16 C -0.037 4.037 17 C -0.177 4.177 18 C -0.022 4.022 19 C -0.086 4.086 20 C -0.125 4.125 21 C 0.054 3.946 22 N -0.090 5.090 23 O -0.497 6.497 24 C 0.055 3.945 25 H 0.271 0.729 26 H 0.136 0.864 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -15.673 4.525 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.098 0.902 9 C 0.140 3.860 10 H 0.069 0.931 11 C -0.096 4.096 12 Cl -0.220 7.220 13 O -0.155 6.155 14 C 0.154 3.846 15 C -0.235 4.235 16 C -0.055 4.055 17 C -0.196 4.196 18 C -0.023 4.023 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.105 4.105 22 N 0.237 4.763 23 O -0.557 6.557 24 C -0.057 4.057 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.998 -15.136 4.224 15.746 hybrid contribution 0.166 0.955 -0.179 0.986 sum 1.164 -14.181 4.045 14.793 Atomic orbital electron populations 1.69792 1.05964 1.28041 1.49251 1.24974 0.95204 0.99817 0.93968 0.86141 0.79707 0.81094 0.78619 1.20093 1.20806 1.19320 1.21044 0.94696 0.87487 1.51893 0.90167 1.20761 0.87648 0.83527 0.94015 0.93104 1.25822 0.95227 0.86415 1.02120 1.98632 1.75887 1.48448 1.98986 1.86664 1.44082 1.19441 1.65316 1.18596 0.90393 0.86877 0.88738 1.21280 0.97952 1.01498 1.02808 1.20786 0.98518 0.91734 0.94464 1.20574 0.94204 1.00019 1.04804 1.17995 0.96255 0.91238 0.96780 1.21432 0.93533 0.97777 0.98402 1.21295 0.98014 0.97410 0.97671 1.22534 0.98825 0.86659 1.02516 1.43353 1.06049 1.11258 1.15670 1.97725 1.84637 1.11964 1.61353 1.18089 0.89453 0.95295 1.02899 0.91860 0.84606 0.90401 0.82982 0.85241 0.84763 0.83277 0.82681 0.80694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 11.29 55.43 0.63 -22.95 16 2 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 3 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.51 -14.23 8.88 -34.44 -0.31 -14.53 16 8 H 0.08 2.33 7.81 -52.48 -0.41 1.92 16 9 C 0.20 4.99 2.19 -27.88 -0.06 4.93 16 10 H 0.05 1.31 5.42 -51.93 -0.28 1.03 16 11 C -0.03 -0.80 6.17 37.16 0.23 -0.57 16 12 Cl -0.25 -5.14 25.53 -51.86 -1.32 -6.46 16 13 O -0.25 -6.38 7.40 -42.30 -0.31 -6.70 16 14 C 0.21 4.48 5.96 -39.11 -0.23 4.25 16 15 C -0.22 -4.02 6.96 -39.81 -0.28 -4.30 16 16 C -0.04 -0.53 9.95 -39.96 -0.40 -0.92 16 17 C -0.18 -2.22 9.77 -39.49 -0.39 -2.61 16 18 C -0.02 -0.31 5.74 -106.81 -0.61 -0.92 16 19 C -0.09 -0.87 9.90 -39.22 -0.39 -1.26 16 20 C -0.13 -1.21 10.02 -39.78 -0.40 -1.61 16 21 C 0.05 0.77 10.65 -17.42 -0.19 0.59 16 22 N -0.09 -1.83 3.61 -10.86 -0.04 -1.87 16 23 O -0.50 -13.45 17.71 -34.59 -0.61 -14.06 16 24 C 0.05 1.07 6.58 -84.70 -0.56 0.51 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.14 3.40 5.95 -51.93 -0.31 3.09 16 27 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 28 H 0.15 3.03 4.98 -52.49 -0.26 2.76 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -34.25 295.37 -8.83 -43.08 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.93 Total: 3.58 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.67 Total: -14.88 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.59 Total: -24.82 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.93 Total: -20.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -5.14 SS G_CDS: -1.32 Total: -6.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.25 -8.83 -43.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227001459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.704 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds