Wall clock time and date at job start Tue Mar 31 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47051 * 270.00005 * 3 2 1 5 5 H 1.48506 * 109.47067 * 30.00154 * 3 2 1 6 6 H 1.48503 * 109.47254 * 149.99746 * 3 2 1 7 7 C 1.37875 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00675 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47126 * 300.00891 * 9 7 2 11 11 C 1.53002 * 109.46737 * 59.99974 * 9 7 2 12 12 Cl 1.80301 * 109.47304 * 185.00379 * 11 9 7 13 13 O 1.42897 * 109.47747 * 180.02562 * 9 7 2 14 14 C 1.35822 * 117.00325 * 147.42228 * 13 9 7 15 15 C 1.36628 * 120.17933 * 356.68300 * 14 13 9 16 16 C 1.39194 * 120.99618 * 180.02562 * 15 14 13 17 17 C 1.36207 * 120.93976 * 359.97384 * 16 15 14 18 18 C 1.40420 * 119.72813 * 0.02562 * 17 16 15 19 19 C 1.40792 * 121.36502 * 179.97438 * 18 17 16 20 20 C 1.36564 * 118.17313 * 180.02562 * 19 18 17 21 21 C 1.39317 * 119.94418 * 0.02562 * 20 19 18 22 22 N 1.31191 * 121.72473 * 0.02562 * 21 20 19 23 23 O 1.41602 * 119.34891 * 179.69725 * 22 21 20 24 24 C 1.33698 * 121.30028 * 359.97438 * 22 21 20 25 25 H 0.96998 * 119.99423 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47524 * 305.00457 * 11 9 7 27 27 H 1.08996 * 109.47125 * 65.00275 * 11 9 7 28 28 H 1.07998 * 119.50057 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.52633 * 180.02562 * 16 15 14 30 30 H 1.08002 * 120.13724 * 180.02562 * 17 16 15 31 31 H 1.08001 * 120.91375 * 0.04254 * 19 18 17 32 32 H 1.08001 * 120.03190 * 179.97438 * 20 19 18 33 33 H 1.08003 * 119.14078 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 17 -0.6396 -4.0713 -1.1773 13 8 2.1796 -3.5854 -0.0005 14 6 1.8051 -4.7167 0.6511 15 6 0.6182 -4.7595 1.3264 16 6 0.2180 -5.9098 2.0004 17 6 0.9986 -7.0260 2.0052 18 6 2.2256 -7.0206 1.3223 19 6 3.0597 -8.1547 1.3050 20 6 4.2391 -8.0774 0.6209 21 6 4.5870 -6.8980 -0.0341 22 7 3.8078 -5.8427 -0.0152 23 8 4.2142 -4.6678 -0.6931 24 6 2.6402 -5.8529 0.6361 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2765 -1.7042 -1.2950 27 1 1.0023 -2.6114 -2.1374 28 1 -0.0187 -3.8874 1.3382 29 1 -0.7253 -5.9176 2.5263 30 1 0.6752 -7.9116 2.5320 31 1 2.7745 -9.0610 1.8185 32 1 4.9019 -8.9294 0.5884 33 1 5.5230 -6.8510 -0.5709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227001459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:41 Heat of formation + Delta-G solvation = 15.768174 kcal Electronic energy + Delta-G solvation = -21281.963596 eV Core-core repulsion = 17915.389798 eV Total energy + Delta-G solvation = -3366.573799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60395 -40.24827 -38.02975 -36.72711 -35.69714 -35.02922 -32.15669 -31.63838 -31.02961 -29.89111 -27.36591 -25.63908 -25.26067 -23.77393 -22.31922 -19.86175 -19.21636 -18.71511 -18.27343 -17.45197 -16.81023 -16.79127 -16.05546 -15.92157 -15.69653 -15.45517 -15.07060 -14.77662 -14.26534 -13.94235 -13.53609 -13.24182 -13.16460 -13.09248 -12.86664 -12.64023 -12.50562 -12.44275 -12.01349 -11.87747 -11.48785 -11.24593 -10.96468 -10.65141 -10.30241 -10.08635 -9.89765 -8.59869 -8.43713 -6.58912 -0.72558 -0.46391 0.81658 1.31458 1.35620 1.45561 1.50390 1.68088 1.77922 2.21265 2.53054 2.83011 2.88930 3.40596 3.61636 3.77572 3.80336 3.90088 4.06863 4.13101 4.30325 4.36913 4.46058 4.73156 4.76218 4.87484 5.00183 5.13936 5.16950 5.31070 5.43421 5.47848 5.69258 5.77991 5.94512 6.11132 6.40922 6.79229 7.13482 8.63017 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.005800 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.509996 B = 4826.698787 C = 5554.523248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.203 3.797 10 H 0.039 0.961 11 C -0.021 4.021 12 Cl -0.216 7.216 13 O -0.290 6.290 14 C 0.136 3.864 15 C -0.211 4.211 16 C -0.058 4.058 17 C -0.131 4.131 18 C -0.041 4.041 19 C -0.036 4.036 20 C -0.117 4.117 21 C 0.083 3.917 22 N -0.141 5.141 23 O -0.607 6.607 24 C 0.031 3.969 25 H 0.279 0.721 26 H 0.124 0.876 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.199 0.801 31 H 0.219 0.781 32 H 0.221 0.779 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -20.855 6.860 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.186 1.186 6 H -0.202 1.202 7 C -0.588 4.588 8 H 0.066 0.934 9 C 0.148 3.852 10 H 0.056 0.944 11 C -0.084 4.084 12 Cl -0.190 7.190 13 O -0.201 6.201 14 C 0.087 3.913 15 C -0.231 4.231 16 C -0.075 4.075 17 C -0.149 4.149 18 C -0.043 4.043 19 C -0.061 4.061 20 C -0.135 4.135 21 C -0.077 4.077 22 N 0.179 4.821 23 O -0.660 6.660 24 C -0.080 4.080 25 H 0.089 0.911 26 H 0.142 0.858 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.183 0.817 30 H 0.216 0.784 31 H 0.235 0.765 32 H 0.238 0.762 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.451 -20.294 6.538 21.326 hybrid contribution 0.338 2.003 -0.722 2.156 sum 0.788 -18.291 5.817 19.210 Atomic orbital electron populations 1.69843 1.06683 1.29153 1.48506 1.25677 0.96114 1.02311 0.92897 0.85268 0.78287 0.77511 0.78921 1.19364 1.18637 1.20219 1.21147 0.93507 0.89951 1.54202 0.93439 1.20410 0.87535 0.83560 0.93694 0.94366 1.25360 0.94945 0.87172 1.00881 1.98607 1.74759 1.46670 1.98982 1.86600 1.44614 1.20918 1.67977 1.19105 0.93124 0.87026 0.92013 1.21282 0.96530 1.02507 1.02809 1.21174 1.00637 0.90831 0.94886 1.21333 0.91736 1.00734 1.01066 1.18627 0.98107 0.90852 0.96670 1.22312 0.91306 0.97537 0.94911 1.22051 0.99079 0.96633 0.95714 1.23563 0.98086 0.86424 0.99638 1.43406 1.08102 1.11581 1.18991 1.97669 1.86176 1.16135 1.65999 1.18671 0.89236 0.96476 1.03627 0.91136 0.85817 0.92266 0.85595 0.81714 0.78390 0.76451 0.76225 0.79343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.06 11.29 21.45 0.24 -49.82 16 2 C 0.03 1.76 5.29 84.65 0.45 2.21 16 3 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.55 -33.72 8.88 25.60 0.23 -33.49 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.20 11.56 2.19 29.85 0.07 11.63 16 10 H 0.04 2.21 5.42 -2.39 -0.01 2.20 16 11 C -0.02 -1.08 6.17 71.98 0.44 -0.64 16 12 Cl -0.22 -9.56 25.53 -2.72 -0.07 -9.63 16 13 O -0.29 -16.90 7.40 -69.45 -0.51 -17.41 16 14 C 0.14 6.42 5.96 22.57 0.13 6.55 16 15 C -0.21 -8.25 6.96 22.12 0.15 -8.10 16 16 C -0.06 -1.49 9.95 22.03 0.22 -1.27 16 17 C -0.13 -2.50 9.77 22.33 0.22 -2.28 16 18 C -0.04 -1.01 5.74 -21.28 -0.12 -1.13 16 19 C -0.04 -0.43 9.90 22.50 0.22 -0.20 16 20 C -0.12 -1.46 10.02 22.14 0.22 -1.24 16 21 C 0.08 2.22 10.65 85.05 0.91 3.12 16 22 N -0.14 -6.07 3.61 -188.26 -0.68 -6.75 16 23 O -0.61 -36.91 17.71 -16.68 -0.30 -37.20 16 24 C 0.03 1.25 6.58 40.38 0.27 1.51 16 25 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.12 6.70 5.95 -2.39 -0.01 6.69 16 27 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.13 5.45 4.98 -2.91 -0.01 5.44 16 29 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.22 -0.12 8.06 -2.91 -0.02 -0.14 16 32 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 33 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -93.86 295.37 5.26 -88.60 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.15 Total: 8.70 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.41 Total: -23.32 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.44 Total: -56.57 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.81 Total: -54.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -9.56 SS G_CDS: -0.07 Total: -9.63 kcal Total: -93.86 5.26 -88.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227001459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.367 kcal (2) G-P(sol) polarization free energy of solvation -93.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds