Wall clock time and date at job start Tue Mar 31 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47485 * 270.00734 * 3 2 1 5 5 H 1.48501 * 109.46826 * 30.00407 * 3 2 1 6 6 H 1.48495 * 109.46826 * 150.00405 * 3 2 1 7 7 C 1.37875 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00398 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47530 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46777 * 60.00063 * 9 7 2 12 12 C 1.35875 * 116.99657 * 90.00194 * 11 9 7 13 13 N 1.31062 * 125.59192 * 0.02562 * 12 11 9 14 14 N 1.40435 * 106.77531 * 179.97438 * 13 12 11 15 15 H 0.96995 * 126.77479 * 179.97438 * 14 13 12 16 16 C 1.34349 * 106.44653 * 359.97438 * 14 13 12 17 17 C 1.50696 * 125.91193 * 179.97438 * 16 14 13 18 18 Cl 1.80306 * 109.47101 * 90.00409 * 17 16 14 19 19 N 1.30893 * 108.17700 * 359.73061 * 16 14 13 20 20 C 1.50702 * 109.46933 * 300.00813 * 9 7 2 21 21 C 1.38236 * 120.00253 * 84.72523 * 20 9 7 22 22 C 1.38236 * 119.99814 * 179.81124 * 21 20 9 23 23 C 1.38236 * 120.00246 * 0.38969 * 22 21 20 24 24 C 1.38243 * 119.99874 * 359.86267 * 23 22 21 25 25 C 1.38236 * 119.99859 * 359.95135 * 24 23 22 26 26 H 0.97003 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47045 * 210.00053 * 17 16 14 28 28 H 1.09001 * 109.47431 * 330.00335 * 17 16 14 29 29 H 1.07997 * 119.99978 * 359.97438 * 21 20 9 30 30 H 1.07995 * 119.99873 * 180.22711 * 22 21 20 31 31 H 1.07999 * 120.00614 * 179.83477 * 23 22 21 32 32 H 1.07994 * 120.00397 * 179.97438 * 24 23 22 33 33 H 1.08003 * 120.00341 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 1.9592 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9820 -3.1313 -2.2763 13 7 2.2013 -3.6035 -2.3658 14 7 2.3559 -4.0808 -3.6775 15 1 3.1491 -4.4906 -4.0566 16 6 1.1883 -3.8576 -4.3035 17 6 0.8735 -4.2026 -5.7363 18 17 0.1925 -5.8701 -5.8173 19 7 0.3698 -3.2934 -3.4520 20 6 0.3849 -2.5792 1.2302 21 6 -0.8705 -2.0007 1.2307 22 6 -1.6664 -2.0775 2.3584 23 6 -1.2037 -2.7259 3.4881 24 6 0.0539 -3.2999 3.4894 25 6 0.8482 -3.2265 2.3604 26 1 -0.4850 0.8401 0.0004 27 1 0.1451 -3.4932 -6.1292 28 1 1.7858 -4.1535 -6.3308 29 1 -1.2306 -1.4910 0.3493 30 1 -2.6487 -1.6287 2.3576 31 1 -1.8245 -2.7836 4.3701 32 1 0.4156 -3.8061 4.3721 33 1 1.8309 -3.6746 2.3614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227027718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:24 Heat of formation + Delta-G solvation = 83.049382 kcal Electronic energy + Delta-G solvation = -20713.569708 eV Core-core repulsion = 17382.206192 eV Total energy + Delta-G solvation = -3331.363516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59116 -38.45531 -36.88543 -36.25716 -33.20033 -31.89083 -31.61893 -30.47844 -29.67455 -27.43817 -26.98280 -23.51480 -21.77863 -21.32830 -20.49077 -20.07837 -17.88141 -17.02913 -16.08520 -15.76992 -15.47374 -14.92373 -14.71826 -14.12870 -14.09556 -13.89007 -13.52492 -13.09840 -12.78870 -12.35227 -11.83890 -11.67356 -11.59141 -11.49227 -11.03024 -10.88524 -10.69362 -10.66282 -10.50052 -10.12812 -9.69751 -9.62541 -9.34024 -9.19612 -8.86500 -8.13268 -7.80771 -7.53944 -6.09347 -4.43681 1.40105 2.40086 2.49531 2.57549 2.93282 3.19228 3.26344 3.29395 3.52070 3.71173 4.24431 4.51541 4.56356 4.95723 5.05741 5.13201 5.47547 5.78824 5.88106 5.95046 6.20887 6.38909 6.57545 6.66229 6.72302 6.82610 7.02940 7.25866 7.37104 7.45054 7.55775 7.75319 7.87970 7.98037 8.23071 8.27286 8.60646 8.92758 9.32320 10.74622 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005074 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.444364 B = 5517.023296 C = 6641.424123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.081 3.919 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.245 3.755 10 H 0.044 0.956 11 O -0.262 6.262 12 C 0.442 3.558 13 N -0.349 5.349 14 N -0.475 5.475 15 H 0.436 0.564 16 C 0.264 3.736 17 C 0.048 3.952 18 Cl -0.155 7.155 19 N -0.522 5.522 20 C -0.046 4.046 21 C -0.046 4.046 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.123 4.123 26 H 0.267 0.733 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.165 0.835 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -7.157 -7.784 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.126 4.126 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.191 3.809 10 H 0.062 0.938 11 O -0.160 6.160 12 C 0.127 3.873 13 N -0.199 5.199 14 N -0.198 5.198 15 H 0.280 0.720 16 C -0.015 4.015 17 C -0.017 4.017 18 Cl -0.128 7.128 19 N -0.261 5.261 20 C -0.047 4.047 21 C -0.065 4.065 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.167 4.167 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.182 0.818 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.027 -6.819 -6.997 9.824 hybrid contribution 1.169 0.725 -0.133 1.382 sum 2.196 -6.094 -7.131 9.634 Atomic orbital electron populations 1.69806 1.05931 1.26687 1.45377 1.25096 0.94902 0.99674 0.92956 0.86471 0.80011 0.82574 0.78313 1.20404 1.20740 1.19591 1.21366 0.93331 0.89887 1.52386 0.91285 1.19029 0.86993 0.96870 0.77963 0.93753 1.86536 1.41158 1.72141 1.16195 1.21896 0.85955 0.90587 0.88820 1.78442 1.19152 1.27321 0.94939 1.47516 1.13451 1.49511 1.09318 0.71967 1.23562 0.84271 0.97618 0.96036 1.22498 1.03554 0.86620 0.89023 1.98759 1.87706 1.27815 1.98557 1.70004 1.32180 1.23613 1.00301 1.19767 0.94464 0.95523 0.94945 1.21894 0.92699 0.92335 0.99564 1.21149 0.99700 1.01506 0.94569 1.20861 0.96354 1.00941 0.97873 1.20706 0.95299 1.02998 0.97661 1.20749 0.99094 1.00695 0.93567 0.92249 0.85068 0.86418 0.81833 0.87766 0.88054 0.87744 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.60 8.50 55.43 0.47 -22.13 16 2 C 0.08 2.15 5.24 -17.82 -0.09 2.06 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.37 8.89 -34.44 -0.31 -14.67 16 8 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.25 6.26 2.47 -29.03 -0.07 6.18 16 10 H 0.04 1.11 7.18 -51.93 -0.37 0.74 16 11 O -0.26 -6.85 8.40 -19.35 -0.16 -7.02 16 12 C 0.44 10.41 8.86 -91.25 -0.81 9.60 16 13 N -0.35 -7.38 11.69 29.18 0.34 -7.04 16 14 N -0.47 -7.25 7.44 32.62 0.24 -7.01 16 15 H 0.44 4.59 8.96 -182.35 -1.63 2.95 16 16 C 0.26 4.04 7.61 -155.72 -1.18 2.86 16 17 C 0.05 0.46 7.28 36.00 0.26 0.73 16 18 Cl -0.15 -1.69 29.13 -51.86 -1.51 -3.20 16 19 N -0.52 -10.84 11.21 -12.10 -0.14 -10.98 16 20 C -0.05 -1.13 4.80 -104.62 -0.50 -1.63 16 21 C -0.05 -1.11 7.46 -39.58 -0.30 -1.40 16 22 C -0.15 -3.18 10.05 -39.58 -0.40 -3.57 16 23 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 25 C -0.12 -2.66 9.68 -39.58 -0.38 -3.05 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.16 4.29 5.50 -52.49 -0.29 4.00 16 30 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -31.82 305.95 -10.12 -41.94 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.38 Total: 4.35 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -4.58 Total: -9.32 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.92 Total: -47.15 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.16 Total: -7.02 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.51 Total: -3.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.82 -10.12 -41.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227027718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.985 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds