Wall clock time and date at job start Tue Mar 31 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47485 * 270.00734 * 3 2 1 5 5 H 1.48501 * 109.46826 * 30.00407 * 3 2 1 6 6 H 1.48495 * 109.46826 * 150.00405 * 3 2 1 7 7 C 1.37875 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00398 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47530 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46777 * 60.00063 * 9 7 2 12 12 C 1.35875 * 116.99657 * 90.00194 * 11 9 7 13 13 N 1.31062 * 125.59192 * 0.02562 * 12 11 9 14 14 N 1.40435 * 106.77531 * 179.97438 * 13 12 11 15 15 H 0.96995 * 126.77479 * 179.97438 * 14 13 12 16 16 C 1.34349 * 106.44653 * 359.97438 * 14 13 12 17 17 C 1.50696 * 125.91193 * 179.97438 * 16 14 13 18 18 Cl 1.80306 * 109.47101 * 90.00409 * 17 16 14 19 19 N 1.30893 * 108.17700 * 359.73061 * 16 14 13 20 20 C 1.50702 * 109.46933 * 300.00813 * 9 7 2 21 21 C 1.38236 * 120.00253 * 84.72523 * 20 9 7 22 22 C 1.38236 * 119.99814 * 179.81124 * 21 20 9 23 23 C 1.38236 * 120.00246 * 0.38969 * 22 21 20 24 24 C 1.38243 * 119.99874 * 359.86267 * 23 22 21 25 25 C 1.38236 * 119.99859 * 359.95135 * 24 23 22 26 26 H 0.97003 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47045 * 210.00053 * 17 16 14 28 28 H 1.09001 * 109.47431 * 330.00335 * 17 16 14 29 29 H 1.07997 * 119.99978 * 359.97438 * 21 20 9 30 30 H 1.07995 * 119.99873 * 180.22711 * 22 21 20 31 31 H 1.07999 * 120.00614 * 179.83477 * 23 22 21 32 32 H 1.07994 * 120.00397 * 179.97438 * 24 23 22 33 33 H 1.08003 * 120.00341 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 1.9592 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 0.9820 -3.1313 -2.2763 13 7 2.2013 -3.6035 -2.3658 14 7 2.3559 -4.0808 -3.6775 15 1 3.1491 -4.4906 -4.0566 16 6 1.1883 -3.8576 -4.3035 17 6 0.8735 -4.2026 -5.7363 18 17 0.1925 -5.8701 -5.8173 19 7 0.3698 -3.2934 -3.4520 20 6 0.3849 -2.5792 1.2302 21 6 -0.8705 -2.0007 1.2307 22 6 -1.6664 -2.0775 2.3584 23 6 -1.2037 -2.7259 3.4881 24 6 0.0539 -3.2999 3.4894 25 6 0.8482 -3.2265 2.3604 26 1 -0.4850 0.8401 0.0004 27 1 0.1451 -3.4932 -6.1292 28 1 1.7858 -4.1535 -6.3308 29 1 -1.2306 -1.4910 0.3493 30 1 -2.6487 -1.6287 2.3576 31 1 -1.8245 -2.7836 4.3701 32 1 0.4156 -3.8061 4.3721 33 1 1.8309 -3.6746 2.3614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227027718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:24 Heat of formation + Delta-G solvation = 60.940479 kcal Electronic energy + Delta-G solvation = -20714.528422 eV Core-core repulsion = 17382.206192 eV Total energy + Delta-G solvation = -3332.322230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06906 -40.17736 -38.59705 -37.15319 -35.07616 -33.38785 -32.99894 -32.17231 -31.33147 -28.90615 -28.57096 -25.36608 -23.41011 -22.87337 -21.97146 -21.77452 -19.33510 -18.86056 -17.73252 -17.36534 -17.03632 -16.74446 -16.07691 -15.58712 -15.43382 -15.16835 -14.87031 -14.73092 -14.36663 -14.00253 -13.58039 -13.40476 -13.26901 -13.04983 -12.86337 -12.48260 -12.26150 -11.87636 -11.77975 -11.49981 -11.41721 -11.26590 -10.94640 -10.87028 -10.82022 -9.81376 -9.47689 -9.27273 -8.03574 -6.48095 0.27863 0.73567 0.92565 1.32984 1.35147 1.36187 1.46170 1.64110 2.05899 2.21381 2.32821 3.04854 3.24717 3.37003 3.65921 4.12389 4.27179 4.33069 4.39245 4.42175 4.57603 4.75860 4.78465 5.01888 5.14007 5.22655 5.37810 5.53871 5.63063 5.81355 5.89036 6.03838 6.22928 6.26723 6.42062 6.52100 6.77563 7.21556 7.34960 8.76468 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005074 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.444364 B = 5517.023296 C = 6641.424123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.252 3.748 10 H 0.033 0.967 11 O -0.287 6.287 12 C 0.412 3.588 13 N -0.375 5.375 14 N -0.455 5.455 15 H 0.458 0.542 16 C 0.285 3.715 17 C 0.053 3.947 18 Cl -0.161 7.161 19 N -0.563 5.563 20 C -0.076 4.076 21 C -0.069 4.069 22 C -0.157 4.157 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.137 4.137 26 H 0.266 0.734 27 H 0.147 0.853 28 H 0.170 0.830 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -7.670 -7.784 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.198 3.802 10 H 0.051 0.949 11 O -0.186 6.186 12 C 0.096 3.904 13 N -0.225 5.225 14 N -0.181 5.181 15 H 0.307 0.693 16 C 0.007 3.993 17 C -0.012 4.012 18 Cl -0.134 7.134 19 N -0.303 5.303 20 C -0.076 4.076 21 C -0.088 4.088 22 C -0.175 4.175 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.188 0.812 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.333 -7.368 -7.028 10.270 hybrid contribution 1.089 0.746 -0.228 1.339 sum 2.421 -6.622 -7.256 10.118 Atomic orbital electron populations 1.70016 1.06684 1.26984 1.45519 1.25743 0.95736 1.02209 0.92749 0.85613 0.78994 0.79238 0.78148 1.20418 1.19977 1.19305 1.21470 0.92871 0.91276 1.53696 0.92555 1.18904 0.87083 0.95716 0.78545 0.94935 1.86416 1.41803 1.73199 1.17221 1.22116 0.87053 0.92104 0.89109 1.78287 1.18508 1.27628 0.98082 1.47352 1.14597 1.48586 1.07528 0.69252 1.24492 0.82942 0.94601 0.97297 1.22984 1.06486 0.86206 0.85479 1.98768 1.87979 1.28338 1.98355 1.69959 1.34148 1.25981 1.00229 1.19892 0.94952 0.97381 0.95415 1.21675 0.93477 0.93684 0.99955 1.21401 1.00233 1.01625 0.94262 1.21310 0.96588 0.98944 0.98334 1.21162 0.94895 1.01908 0.97891 1.20999 1.00053 1.00720 0.93705 0.92416 0.83548 0.81241 0.84755 0.85809 0.83891 0.83788 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.72 8.50 21.45 0.18 -47.54 16 2 C 0.04 2.25 5.24 84.65 0.44 2.69 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.56 -31.33 8.89 25.60 0.23 -31.11 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.25 13.53 2.47 29.10 0.07 13.60 16 10 H 0.03 1.74 7.18 -2.39 -0.02 1.72 16 11 O -0.29 -15.93 8.40 -92.14 -0.77 -16.70 16 12 C 0.41 20.21 8.86 180.57 1.60 21.81 16 13 N -0.38 -16.31 11.69 -174.93 -2.04 -18.36 16 14 N -0.46 -13.50 7.44 -50.72 -0.38 -13.88 16 15 H 0.46 8.75 8.96 -213.11 -1.91 6.84 16 16 C 0.29 8.41 7.61 138.23 1.05 9.46 16 17 C 0.05 0.86 7.28 71.23 0.52 1.38 16 18 Cl -0.16 -3.17 29.13 -2.72 -0.08 -3.25 16 19 N -0.56 -23.85 11.21 -304.30 -3.41 -27.26 16 20 C -0.08 -3.82 4.80 -19.86 -0.10 -3.91 16 21 C -0.07 -3.42 7.46 22.27 0.17 -3.26 16 22 C -0.16 -6.49 10.05 22.27 0.22 -6.27 16 23 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 24 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 25 C -0.14 -5.92 9.68 22.27 0.22 -5.70 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.15 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.14 7.46 5.50 -2.91 -0.02 7.44 16 30 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -73.76 305.95 -0.35 -74.12 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.75 Total: 18.00 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.87 Total: -10.74 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.65 Total: -107.03 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.77 Total: -16.70 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -0.08 Total: -3.25 kcal Total: -73.76 -0.35 -74.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227027718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.056 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds