Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47143 * 274.04430 * 3 2 1 5 5 H 1.48497 * 109.47032 * 34.04648 * 3 2 1 6 6 H 1.48497 * 109.46997 * 154.04652 * 3 2 1 7 7 C 1.37870 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00366 * 4.18904 * 7 2 1 9 9 C 1.50702 * 120.00228 * 184.19017 * 7 2 1 10 10 H 1.09002 * 109.46822 * 334.53663 * 9 7 2 11 11 C 1.52999 * 109.47103 * 94.53164 * 9 7 2 12 12 Cl 1.80306 * 109.46944 * 184.58739 * 11 9 7 13 13 O 1.42900 * 109.47547 * 214.53417 * 9 7 2 14 14 C 1.35739 * 117.00312 * 146.49313 * 13 9 7 15 15 C 1.39442 * 120.81397 * 355.62507 * 14 13 9 16 16 C 1.37828 * 119.21866 * 179.75197 * 15 14 13 17 17 N 1.32052 * 120.89012 * 0.53474 * 16 15 14 18 18 C 1.32349 * 121.78417 * 359.73771 * 17 16 15 19 19 O 1.35674 * 119.65437 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99980 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47073 * 299.99952 * 20 19 18 22 22 F 1.39895 * 109.47603 * 59.99941 * 20 19 18 23 23 C 1.38682 * 120.68618 * 359.97438 * 18 17 16 24 24 H 0.97001 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46873 * 64.59497 * 11 9 7 26 26 H 1.08998 * 109.47544 * 304.58937 * 11 9 7 27 27 H 1.08001 * 120.39044 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.55558 * 180.27642 * 16 15 14 29 29 H 1.09001 * 109.47092 * 180.02562 * 20 19 18 30 30 H 1.08006 * 120.47094 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4111 2.0958 -1.3966 5 1 1.4919 2.6264 0.7838 6 1 3.5868 1.4170 0.6127 7 6 2.0045 -1.1940 0.0005 8 1 1.4667 -2.1281 -0.0674 9 6 3.5085 -1.1957 0.0959 10 1 3.8980 -0.2529 -0.2883 11 6 3.9266 -1.3621 1.5582 12 17 5.7200 -1.2293 1.6893 13 8 4.0336 -2.2778 -0.6757 14 6 5.2308 -2.0776 -1.2831 15 6 5.8623 -0.8357 -1.2255 16 6 7.0799 -0.6704 -1.8497 17 7 7.6459 -1.6665 -2.5064 18 6 7.0774 -2.8587 -2.5897 19 8 7.6976 -3.8517 -3.2753 20 6 8.9546 -3.5370 -3.8778 21 9 8.7839 -2.4958 -4.7964 22 9 9.8603 -3.1415 -2.8877 23 6 5.8548 -3.1038 -1.9826 24 1 -0.4850 0.8401 -0.0004 25 1 3.6075 -2.3402 1.9183 26 1 3.4596 -0.5830 2.1606 27 1 5.4047 -0.0143 -0.6941 28 1 7.5759 0.2880 -1.8047 29 1 9.3407 -4.4163 -4.3934 30 1 5.3942 -4.0782 -2.0525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229086720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = -156.197779 kcal Electronic energy + Delta-G solvation = -21352.954109 eV Core-core repulsion = 17424.693777 eV Total energy + Delta-G solvation = -3928.260332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.99189 -47.11784 -40.47301 -38.75692 -37.06840 -35.29973 -33.47360 -31.53383 -30.38257 -30.06087 -26.21683 -25.50169 -23.51017 -22.92070 -20.92980 -19.10991 -18.23160 -17.78226 -17.77944 -16.99304 -15.73792 -15.52658 -15.37676 -15.02386 -14.71306 -14.28166 -13.99782 -13.80362 -13.44054 -13.37797 -13.32867 -12.95882 -12.90427 -12.54256 -12.27738 -12.12735 -11.74397 -11.25042 -11.19210 -10.90183 -10.21659 -10.08194 -9.82914 -9.52314 -9.44759 -9.03301 -8.56446 -8.15174 -6.57929 -4.67044 1.39359 1.71226 2.46428 2.83141 2.99527 3.03366 3.08974 3.51787 3.91112 3.96204 4.03636 4.32985 4.58303 4.76679 4.77950 5.06300 5.31903 5.42688 5.61950 5.69082 5.80167 5.98130 6.11223 6.20338 6.35636 6.59349 7.00283 7.09144 7.69566 8.06136 8.14433 8.54682 8.97132 10.52240 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.004775 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.316974 B = 5862.402446 C = 6139.725977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.088 3.912 3 Si 0.860 3.140 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.527 4.527 8 H 0.092 0.908 9 C 0.172 3.828 10 H 0.057 0.943 11 C -0.039 4.039 12 Cl -0.227 7.227 13 O -0.290 6.290 14 C 0.224 3.776 15 C -0.271 4.271 16 C 0.165 3.835 17 N -0.558 5.558 18 C 0.328 3.672 19 O -0.319 6.319 20 C 0.426 3.574 21 F -0.195 7.195 22 F -0.195 7.195 23 C -0.225 4.225 24 H 0.275 0.725 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.830 -3.512 -3.766 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.119 4.119 3 Si 0.685 3.315 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.563 4.563 8 H 0.110 0.890 9 C 0.117 3.883 10 H 0.074 0.926 11 C -0.102 4.102 12 Cl -0.201 7.201 13 O -0.200 6.200 14 C 0.168 3.832 15 C -0.293 4.293 16 C 0.012 3.988 17 N -0.284 5.284 18 C 0.151 3.849 19 O -0.232 6.232 20 C 0.336 3.664 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.247 4.247 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.162 0.838 28 H 0.175 0.825 29 H 0.189 0.811 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.313 -3.645 -4.159 15.344 hybrid contribution -0.212 1.225 0.535 1.353 sum 14.100 -2.421 -3.624 14.759 Atomic orbital electron populations 1.69829 1.06208 1.28166 1.45725 1.24957 0.94925 0.98906 0.93118 0.87066 0.80847 0.83703 0.79869 1.19004 1.19940 1.18014 1.20661 0.86151 0.96140 1.53370 0.88988 1.21059 0.95459 0.86396 0.85386 0.92586 1.25968 0.76807 1.05424 1.01993 1.98681 1.23744 1.98954 1.98729 1.86308 1.29168 1.43868 1.60614 1.19029 0.85300 0.91539 0.87308 1.22267 0.99591 0.98882 1.08519 1.21969 0.91173 0.95948 0.89756 1.67321 1.36762 1.00137 1.24165 1.19047 0.89222 0.86083 0.90516 1.86738 1.34385 1.36688 1.65348 1.23034 0.77503 0.87828 0.78040 1.93096 1.94900 1.63153 1.66528 1.93093 1.67709 1.92804 1.64075 1.20026 0.95808 1.01468 1.07349 0.91419 0.88571 0.88134 0.83820 0.82501 0.81053 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.96 55.43 0.77 -22.78 16 2 C 0.09 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 18.52 27.26 -169.99 -4.63 13.89 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.12 6.44 56.52 0.36 -4.75 16 7 C -0.53 -13.33 9.24 -34.44 -0.32 -13.64 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.17 3.71 1.80 -27.88 -0.05 3.66 16 10 H 0.06 1.20 2.41 -51.93 -0.12 1.08 16 11 C -0.04 -0.74 6.32 37.16 0.23 -0.51 16 12 Cl -0.23 -4.06 25.81 -51.86 -1.34 -5.40 16 13 O -0.29 -6.21 9.74 -18.93 -0.18 -6.39 16 14 C 0.22 4.32 5.96 -38.86 -0.23 4.08 16 15 C -0.27 -4.86 7.21 -39.28 -0.28 -5.15 16 16 C 0.17 2.71 11.17 -17.61 -0.20 2.51 16 17 N -0.56 -9.65 8.07 -13.40 -0.11 -9.76 16 18 C 0.33 5.59 7.18 -17.16 -0.12 5.47 16 19 O -0.32 -4.57 10.41 -18.72 -0.19 -4.77 16 20 C 0.43 4.85 6.06 101.05 0.61 5.47 16 21 F -0.20 -2.65 16.57 2.25 0.04 -2.61 16 22 F -0.20 -2.65 16.57 2.25 0.04 -2.61 16 23 C -0.22 -3.98 10.00 -39.14 -0.39 -4.37 16 24 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 26 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 27 H 0.14 2.60 5.36 -52.49 -0.28 2.31 16 28 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.17 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.15 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -28.67 284.11 -4.29 -32.96 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -2.12 Total: 3.50 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.85 Total: -0.32 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.67 Total: -32.53 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.38 Total: -11.16 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.22 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.63 Total: 13.89 kcal Atomic # 17 Polarization: -4.06 SS G_CDS: -1.34 Total: -5.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.67 -4.29 -32.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229086720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.234 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds