Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47143 * 274.04430 * 3 2 1 5 5 H 1.48497 * 109.47032 * 34.04648 * 3 2 1 6 6 H 1.48497 * 109.46997 * 154.04652 * 3 2 1 7 7 C 1.37870 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00366 * 4.18904 * 7 2 1 9 9 C 1.50702 * 120.00228 * 184.19017 * 7 2 1 10 10 H 1.09002 * 109.46822 * 334.53663 * 9 7 2 11 11 C 1.52999 * 109.47103 * 94.53164 * 9 7 2 12 12 Cl 1.80306 * 109.46944 * 184.58739 * 11 9 7 13 13 O 1.42900 * 109.47547 * 214.53417 * 9 7 2 14 14 C 1.35739 * 117.00312 * 146.49313 * 13 9 7 15 15 C 1.39442 * 120.81397 * 355.62507 * 14 13 9 16 16 C 1.37828 * 119.21866 * 179.75197 * 15 14 13 17 17 N 1.32052 * 120.89012 * 0.53474 * 16 15 14 18 18 C 1.32349 * 121.78417 * 359.73771 * 17 16 15 19 19 O 1.35674 * 119.65437 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99980 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47073 * 299.99952 * 20 19 18 22 22 F 1.39895 * 109.47603 * 59.99941 * 20 19 18 23 23 C 1.38682 * 120.68618 * 359.97438 * 18 17 16 24 24 H 0.97001 * 119.99998 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46873 * 64.59497 * 11 9 7 26 26 H 1.08998 * 109.47544 * 304.58937 * 11 9 7 27 27 H 1.08001 * 120.39044 * 0.02562 * 15 14 13 28 28 H 1.08001 * 119.55558 * 180.27642 * 16 15 14 29 29 H 1.09001 * 109.47092 * 180.02562 * 20 19 18 30 30 H 1.08006 * 120.47094 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4111 2.0958 -1.3966 5 1 1.4919 2.6264 0.7838 6 1 3.5868 1.4170 0.6127 7 6 2.0045 -1.1940 0.0005 8 1 1.4667 -2.1281 -0.0674 9 6 3.5085 -1.1957 0.0959 10 1 3.8980 -0.2529 -0.2883 11 6 3.9266 -1.3621 1.5582 12 17 5.7200 -1.2293 1.6893 13 8 4.0336 -2.2778 -0.6757 14 6 5.2308 -2.0776 -1.2831 15 6 5.8623 -0.8357 -1.2255 16 6 7.0799 -0.6704 -1.8497 17 7 7.6459 -1.6665 -2.5064 18 6 7.0774 -2.8587 -2.5897 19 8 7.6976 -3.8517 -3.2753 20 6 8.9546 -3.5370 -3.8778 21 9 8.7839 -2.4958 -4.7964 22 9 9.8603 -3.1415 -2.8877 23 6 5.8548 -3.1038 -1.9826 24 1 -0.4850 0.8401 -0.0004 25 1 3.6075 -2.3402 1.9183 26 1 3.4596 -0.5830 2.1606 27 1 5.4047 -0.0143 -0.6941 28 1 7.5759 0.2880 -1.8047 29 1 9.3407 -4.4163 -4.3934 30 1 5.3942 -4.0782 -2.0525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229086720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -175.623115 kcal Electronic energy + Delta-G solvation = -21353.796455 eV Core-core repulsion = 17424.693777 eV Total energy + Delta-G solvation = -3929.102678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.042 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.96011 -48.10008 -41.82901 -40.15709 -38.37425 -36.79897 -35.31544 -33.11290 -31.70069 -31.62781 -27.31941 -27.21701 -24.86095 -24.32145 -22.43438 -20.45450 -19.51171 -19.25111 -18.77172 -18.42535 -17.27972 -16.92490 -16.66135 -16.36651 -16.15786 -15.68482 -15.40540 -14.93592 -14.82339 -14.81395 -14.66773 -14.43407 -14.18039 -13.85820 -13.61939 -13.28039 -13.13752 -12.93368 -12.73374 -12.48146 -11.91799 -11.58689 -11.43641 -11.21760 -10.92298 -10.78587 -9.90684 -9.60734 -8.52449 -6.68151 0.06932 0.31154 1.22715 1.31592 1.37193 1.38733 1.39390 2.16426 2.36320 2.69156 2.69253 2.90346 3.26320 3.68972 3.74063 3.84139 3.87165 4.05812 4.08872 4.15265 4.29181 4.63568 4.70359 4.83517 4.94311 5.09283 5.25083 5.79445 5.90828 6.41634 6.54198 6.74174 7.01080 8.62077 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.004775 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.316974 B = 5862.402446 C = 6139.725977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.040 3.960 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.228 1.228 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.179 3.821 10 H 0.063 0.937 11 C -0.036 4.036 12 Cl -0.208 7.208 13 O -0.310 6.310 14 C 0.203 3.797 15 C -0.279 4.279 16 C 0.171 3.829 17 N -0.564 5.564 18 C 0.328 3.672 19 O -0.320 6.320 20 C 0.418 3.582 21 F -0.209 7.209 22 F -0.208 7.208 23 C -0.234 4.234 24 H 0.279 0.721 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.144 0.856 28 H 0.192 0.808 29 H 0.238 0.762 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.541 -2.758 -4.079 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.163 4.163 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.151 1.151 7 C -0.575 4.575 8 H 0.065 0.935 9 C 0.124 3.876 10 H 0.081 0.919 11 C -0.099 4.099 12 Cl -0.182 7.182 13 O -0.221 6.221 14 C 0.148 3.852 15 C -0.300 4.300 16 C 0.017 3.983 17 N -0.291 5.291 18 C 0.151 3.849 19 O -0.233 6.233 20 C 0.329 3.671 21 F -0.190 7.190 22 F -0.190 7.190 23 C -0.255 4.255 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.162 0.838 28 H 0.208 0.792 29 H 0.254 0.746 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 17.058 -2.918 -4.477 17.875 hybrid contribution -0.947 0.852 0.546 1.386 sum 16.110 -2.067 -3.931 16.711 Atomic orbital electron populations 1.69956 1.08133 1.29374 1.47644 1.25763 0.95563 1.02547 0.92387 0.86133 0.80804 0.78881 0.80196 1.18752 1.19336 1.15115 1.20743 0.88432 0.94639 1.53696 0.93489 1.20852 0.93147 0.86866 0.86769 0.91949 1.25637 0.77999 1.06029 1.00253 1.98679 1.21919 1.98937 1.98638 1.86228 1.30735 1.43714 1.61436 1.19253 0.84918 0.92848 0.88197 1.22312 1.00232 0.98228 1.09190 1.22499 0.90504 0.96955 0.88295 1.67455 1.36925 1.00394 1.24302 1.19188 0.89069 0.86499 0.90162 1.86753 1.35668 1.35939 1.64920 1.24178 0.76074 0.89394 0.77478 1.93067 1.94878 1.64253 1.66847 1.93065 1.67976 1.93115 1.64858 1.20174 0.96343 1.01642 1.07362 0.91128 0.88378 0.87199 0.83799 0.79161 0.74611 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.35 13.96 21.44 0.30 -51.06 16 2 C 0.04 2.09 5.47 84.65 0.46 2.56 16 3 Si 0.92 37.41 27.26 68.60 1.87 39.28 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.23 -8.19 6.44 99.48 0.64 -7.55 16 7 C -0.54 -28.06 9.24 25.60 0.24 -27.82 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 9 C 0.18 7.67 1.80 29.85 0.05 7.72 16 10 H 0.06 2.58 2.41 -2.39 -0.01 2.58 16 11 C -0.04 -1.34 6.32 71.98 0.45 -0.89 16 12 Cl -0.21 -6.98 25.81 -2.72 -0.07 -7.05 16 13 O -0.31 -13.37 9.74 -90.63 -0.88 -14.26 16 14 C 0.20 7.64 5.96 22.74 0.14 7.77 16 15 C -0.28 -9.43 7.21 22.46 0.16 -9.27 16 16 C 0.17 5.14 11.17 84.56 0.94 6.09 16 17 N -0.56 -18.18 8.07 -309.13 -2.50 -20.68 16 18 C 0.33 10.57 7.18 84.72 0.61 11.18 16 19 O -0.32 -8.42 10.41 -89.91 -0.94 -9.36 16 20 C 0.42 8.20 6.06 113.37 0.69 8.89 16 21 F -0.21 -5.14 16.57 44.97 0.75 -4.39 16 22 F -0.21 -5.10 16.57 44.97 0.75 -4.36 16 23 C -0.23 -8.06 10.00 22.56 0.23 -7.83 16 24 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 26 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 27 H 0.14 4.83 5.36 -2.91 -0.02 4.81 16 28 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.24 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.15 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -63.43 284.11 4.38 -59.05 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.13 Total: 14.43 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 3.97 Total: -1.61 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -2.20 Total: -71.73 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.82 Total: -23.61 kcal Atomic # 9 Polarization: -10.24 SS G_CDS: 1.49 Total: -8.75 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.87 Total: 39.28 kcal Atomic # 17 Polarization: -6.98 SS G_CDS: -0.07 Total: -7.05 kcal Total: -63.43 4.38 -59.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229086720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.576 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds