Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48497 * 109.46652 * 274.99241 * 3 2 1 5 5 H 1.48494 * 109.46983 * 34.99719 * 3 2 1 6 6 H 1.48504 * 109.46843 * 154.99713 * 3 2 1 7 7 C 1.37877 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00492 * 185.52720 * 7 2 1 9 9 C 1.50698 * 120.00078 * 5.53234 * 7 2 1 10 10 H 1.08997 * 109.47299 * 305.10191 * 9 7 2 11 11 C 1.53003 * 109.47321 * 65.09792 * 9 7 2 12 12 Cl 1.80295 * 109.47528 * 185.62387 * 11 9 7 13 13 O 1.42903 * 109.47762 * 185.09780 * 9 7 2 14 14 C 1.35890 * 117.00108 * 148.21375 * 13 9 7 15 15 C 1.38844 * 119.91210 * 355.65876 * 14 13 9 16 16 C 1.37871 * 120.08981 * 179.72349 * 15 14 13 17 17 C 1.39594 * 119.90546 * 0.56571 * 16 15 14 18 18 C 1.47824 * 120.08506 * 179.72942 * 17 16 15 19 19 C 1.35773 * 126.58301 * 359.68717 * 18 17 16 20 20 N 1.34171 * 107.51217 * 179.87560 * 19 18 17 21 21 C 1.30342 * 108.90421 * 0.40007 * 20 19 18 22 22 O 1.34030 * 109.03414 * 359.74831 * 21 20 19 23 23 C 1.39590 * 119.82532 * 359.70218 * 17 16 15 24 24 C 1.37871 * 119.91026 * 0.02562 * 23 17 16 25 25 H 0.97001 * 120.00204 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46929 * 305.62451 * 11 9 7 27 27 H 1.09002 * 109.46814 * 65.62269 * 11 9 7 28 28 H 1.08000 * 119.95659 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.04684 * 180.25580 * 16 15 14 30 30 H 1.07991 * 126.24334 * 0.02562 * 19 18 17 31 31 H 1.08001 * 125.47823 * 179.71964 * 21 20 19 32 32 H 1.08005 * 120.04672 * 179.97438 * 23 17 16 33 33 H 1.08003 * 119.95591 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1072 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4119 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0807 -1.1963 0.0906 9 6 1.2563 -2.4962 -0.1247 10 1 0.4951 -2.5541 0.6533 11 6 0.5875 -2.5700 -1.4988 12 17 -0.4411 -4.0481 -1.5881 13 8 2.1691 -3.5861 0.0198 14 6 1.6867 -4.7242 0.5843 15 6 0.3872 -4.7582 1.0720 16 6 -0.1079 -5.9127 1.6402 17 6 0.7033 -7.0448 1.7355 18 6 0.1785 -8.2829 2.3494 19 6 -1.0632 -8.4659 2.8671 20 7 -1.1306 -9.7278 3.3182 21 6 0.0141 -10.3138 3.1057 22 8 0.8444 -9.4477 2.5084 23 6 2.0111 -7.0047 1.2490 24 6 2.4967 -5.8481 0.6771 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0326 -1.6863 -1.6490 27 1 1.3530 -2.6127 -2.2736 28 1 -0.2380 -3.8803 1.0025 29 1 -1.1201 -5.9396 2.0156 30 1 -1.8534 -7.7309 2.9062 31 1 0.2548 -11.3332 3.3690 32 1 2.6419 -7.8784 1.3212 33 1 3.5086 -5.8162 0.3008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231049457.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = -18.603829 kcal Electronic energy + Delta-G solvation = -20293.007415 eV Core-core repulsion = 16924.943134 eV Total energy + Delta-G solvation = -3368.064281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.19165 -41.01893 -38.58973 -36.62581 -35.72777 -35.35250 -32.96431 -32.03539 -31.28626 -28.91753 -27.25087 -24.84400 -24.45920 -23.35953 -22.43530 -21.65515 -19.44089 -18.69194 -18.59528 -17.52129 -17.12943 -16.84369 -16.36978 -16.16061 -15.55477 -15.23537 -15.02746 -14.62357 -14.34677 -14.22539 -14.03302 -13.71201 -13.29846 -13.21087 -12.92136 -12.83755 -12.50795 -12.38464 -12.27560 -11.85933 -11.58193 -11.46665 -11.22453 -11.11799 -10.59299 -10.18571 -9.91909 -8.58964 -8.38023 -6.52931 -0.22259 0.41554 1.05662 1.39138 1.44255 1.54025 1.57623 1.75926 1.79220 2.26686 2.67295 2.87866 2.96933 3.42897 3.70356 3.92232 3.98353 4.08843 4.25256 4.30170 4.38064 4.41615 4.61904 4.73456 4.81917 4.89054 5.06673 5.14616 5.34119 5.40661 5.44093 5.51022 5.56825 5.78959 5.82991 6.46821 6.72460 6.79917 7.19449 8.69281 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.003734 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.000295 B = 7496.968558 C = 7704.669866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.209 3.791 10 H 0.040 0.960 11 C -0.023 4.023 12 Cl -0.217 7.217 13 O -0.324 6.324 14 C 0.141 3.859 15 C -0.199 4.199 16 C -0.054 4.054 17 C -0.080 4.080 18 C 0.007 3.993 19 C -0.047 4.047 20 N -0.518 5.518 21 C 0.180 3.820 22 O -0.208 6.208 23 C -0.057 4.057 24 C -0.167 4.167 25 H 0.275 0.725 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.194 0.806 31 H 0.298 0.702 32 H 0.152 0.848 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -13.896 2.854 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.153 3.847 10 H 0.057 0.943 11 C -0.086 4.086 12 Cl -0.191 7.191 13 O -0.238 6.238 14 C 0.095 3.905 15 C -0.217 4.217 16 C -0.072 4.072 17 C -0.081 4.081 18 C -0.046 4.046 19 C -0.185 4.185 20 N -0.246 5.246 21 C -0.045 4.045 22 O -0.096 6.096 23 C -0.075 4.075 24 C -0.186 4.186 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.211 0.789 31 H 0.313 0.687 32 H 0.169 0.831 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.437 -14.129 3.039 14.458 hybrid contribution 0.407 1.387 -0.414 1.503 sum 0.843 -12.742 2.625 13.037 Atomic orbital electron populations 1.69981 1.07075 1.29046 1.48175 1.25692 0.95846 1.02507 0.93200 0.85294 0.78550 0.77782 0.78666 1.19365 1.20313 1.19318 1.21199 0.94602 0.89468 1.53467 0.91522 1.20317 0.88933 0.82908 0.92508 0.94251 1.25324 0.94713 0.87075 1.01464 1.98646 1.74290 1.47261 1.98868 1.86090 1.41521 1.21312 1.74847 1.19620 0.92706 0.87232 0.90964 1.21324 0.96071 1.00117 1.04199 1.20896 0.99702 0.90262 0.96317 1.17477 0.95313 0.89699 1.05581 1.21382 0.92462 0.86062 1.04715 1.23502 0.97397 0.94888 1.02698 1.70335 1.24933 1.07142 1.22195 1.29200 0.82789 0.98336 0.94163 1.84472 1.43041 1.20460 1.61582 1.21126 0.94156 0.97416 0.94841 1.20511 1.01124 0.90921 1.06014 0.91535 0.87853 0.89992 0.85540 0.83745 0.78889 0.68727 0.83083 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.61 11.95 21.45 0.26 -46.35 16 2 C 0.03 1.48 5.22 84.66 0.44 1.92 16 3 Si 0.97 39.70 29.54 68.60 2.03 41.73 16 4 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.55 -28.32 8.82 25.60 0.23 -28.10 16 8 H 0.07 3.48 7.82 -2.91 -0.02 3.45 16 9 C 0.21 9.96 2.07 29.85 0.06 10.02 16 10 H 0.04 2.02 5.40 -2.39 -0.01 2.01 16 11 C -0.02 -1.00 6.22 71.98 0.45 -0.55 16 12 Cl -0.22 -8.52 25.48 -2.72 -0.07 -8.59 16 13 O -0.32 -14.62 9.74 -92.31 -0.90 -15.52 16 14 C 0.14 5.51 5.96 22.56 0.13 5.65 16 15 C -0.20 -7.36 6.94 22.33 0.16 -7.21 16 16 C -0.05 -1.66 9.57 22.51 0.22 -1.44 16 17 C -0.08 -2.32 5.87 -20.09 -0.12 -2.44 16 18 C 0.01 0.18 7.07 24.24 0.17 0.35 16 19 C -0.05 -1.18 11.29 83.76 0.95 -0.23 16 20 N -0.52 -12.48 11.27 -315.04 -3.55 -16.03 16 21 C 0.18 3.17 13.22 130.46 1.72 4.89 16 22 O -0.21 -4.75 10.59 -8.04 -0.09 -4.84 16 23 C -0.06 -1.63 9.72 22.51 0.22 -1.41 16 24 C -0.17 -5.44 9.97 22.33 0.22 -5.21 16 25 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 26 H 0.10 4.88 6.60 -2.39 -0.02 4.87 16 27 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.13 5.17 5.07 -2.91 -0.01 5.16 16 29 H 0.14 3.72 7.03 -2.91 -0.02 3.70 16 30 H 0.19 4.19 7.29 -2.92 -0.02 4.17 16 31 H 0.30 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.15 3.44 7.94 -2.91 -0.02 3.42 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -59.07 301.55 3.68 -55.39 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.15 Total: 17.99 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.85 Total: -23.77 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -3.29 Total: -62.39 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.98 Total: -20.36 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 17 Polarization: -8.52 SS G_CDS: -0.07 Total: -8.59 kcal Total: -59.07 3.68 -55.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231049457.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.787 kcal (2) G-P(sol) polarization free energy of solvation -59.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds