Wall clock time and date at job start Tue Mar 31 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47240 * 309.53802 * 3 2 1 5 5 O 1.21292 * 119.99894 * 359.97438 * 4 3 2 6 6 C 1.46860 * 120.00083 * 180.02562 * 4 3 2 7 7 C 1.40038 * 120.11423 * 179.97438 * 6 4 3 8 8 C 1.37112 * 119.88249 * 179.69724 * 7 6 4 9 9 C 1.39076 * 120.11847 * 0.25983 * 8 7 6 10 10 O 1.35661 * 119.88868 * 179.97438 * 9 8 7 11 11 C 1.42905 * 117.00007 * 356.48766 * 10 9 8 12 12 H 1.09000 * 109.46788 * 27.18924 * 11 10 9 13 13 C 1.50694 * 109.47149 * 147.18999 * 11 10 9 14 14 H 1.08001 * 120.00529 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99719 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99986 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99807 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47365 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47225 * 120.00436 * 17 15 13 20 20 H 1.48505 * 109.47089 * 240.00021 * 17 15 13 21 21 C 1.53002 * 109.46893 * 267.19446 * 11 10 9 22 22 Cl 1.80303 * 109.47122 * 64.99765 * 21 11 10 23 23 C 1.39082 * 120.23010 * 0.02562 * 9 8 7 24 24 C 1.37121 * 120.11325 * 359.97438 * 23 9 8 25 25 H 1.09000 * 109.47227 * 189.53947 * 3 2 1 26 26 H 1.09008 * 109.47600 * 69.53916 * 3 2 1 27 27 H 1.07999 * 120.05775 * 359.97438 * 7 6 4 28 28 H 1.08002 * 119.94330 * 180.28112 * 8 7 6 29 29 H 0.97007 * 119.99873 * 179.97438 * 16 15 13 30 30 H 1.09003 * 109.46862 * 184.99460 * 21 11 10 31 31 H 1.08994 * 109.47173 * 304.99605 * 21 11 10 32 32 H 1.07995 * 119.94516 * 180.02562 * 23 9 8 33 33 H 1.08003 * 120.05634 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1107 -0.9036 1.0957 5 8 2.3228 -1.4905 1.8070 6 6 4.5547 -1.0733 1.3030 7 6 5.0245 -1.9126 2.3209 8 6 6.3736 -2.0724 2.5062 9 6 7.2749 -1.3987 1.6890 10 8 8.6088 -1.5598 1.8769 11 6 9.0151 -2.3738 2.9790 12 1 8.2353 -3.1030 3.1989 13 6 10.2916 -3.0937 2.6280 14 1 10.7474 -2.9444 1.6604 15 6 10.8782 -3.9423 3.5428 16 7 10.3235 -4.1239 4.7213 17 14 12.4610 -4.8342 3.1080 18 1 12.8770 -4.4619 1.7320 19 1 13.5259 -4.4496 4.0689 20 1 12.2379 -6.3007 3.1775 21 6 9.2484 -1.4907 4.2064 22 17 7.6881 -0.7437 4.7147 23 6 6.8136 -0.5593 0.6805 24 6 5.4665 -0.3925 0.4868 25 1 2.9708 1.0143 0.1703 26 1 2.9715 -0.3584 -0.9629 27 1 4.3254 -2.4365 2.9558 28 1 6.7370 -2.7230 3.2880 29 1 10.7361 -4.7212 5.3647 30 1 9.6429 -2.0979 5.0212 31 1 9.9632 -0.7060 3.9589 32 1 7.5176 -0.0387 0.0484 33 1 5.1093 0.2592 -0.2969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:26 Heat of formation + Delta-G solvation = -35.306611 kcal Electronic energy + Delta-G solvation = -20034.960763 eV Core-core repulsion = 16666.172195 eV Total energy + Delta-G solvation = -3368.788568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20278 -39.17348 -36.93053 -36.45815 -34.98172 -33.60529 -31.93261 -30.93030 -29.81128 -28.91280 -25.47835 -23.76498 -22.91666 -21.10719 -20.00136 -17.97718 -17.75099 -16.95491 -16.49644 -15.73359 -15.51612 -15.12210 -14.75335 -14.44899 -14.25287 -13.64121 -13.50843 -13.29377 -13.06403 -12.87028 -12.58369 -12.34314 -12.21419 -12.11042 -11.89318 -11.71187 -11.27790 -11.09761 -10.91492 -10.72927 -10.32490 -9.90334 -9.78132 -9.55294 -9.32139 -8.80622 -8.76717 -7.66294 -6.55861 -4.64405 0.89445 1.67781 2.46719 2.48963 2.63577 3.03584 3.13990 3.18569 3.26402 3.60021 3.84994 4.04953 4.07432 4.23111 4.80920 4.89663 4.94630 5.01337 5.09202 5.29279 5.50256 5.70574 5.81411 6.06012 6.10287 6.23622 6.37416 6.47673 6.70277 6.77017 6.94743 7.05184 7.34731 7.41444 7.45897 7.60436 8.08963 8.50958 9.04149 10.51213 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.003553 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.259472 B = 7878.683301 C = 8163.587424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.215 3.785 3 C -0.073 4.073 4 C 0.411 3.589 5 O -0.458 6.458 6 C -0.238 4.238 7 C -0.014 4.014 8 C -0.210 4.210 9 C 0.201 3.799 10 O -0.302 6.302 11 C 0.202 3.798 12 H 0.055 0.945 13 C -0.525 4.525 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.917 3.083 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.038 4.038 22 Cl -0.238 7.238 23 C -0.184 4.184 24 C -0.036 4.036 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.273 0.727 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 6.927 -6.920 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.103 4.103 3 C -0.113 4.113 4 C 0.288 3.712 5 O -0.335 6.335 6 C -0.240 4.240 7 C -0.032 4.032 8 C -0.228 4.228 9 C 0.152 3.848 10 O -0.213 6.213 11 C 0.148 3.852 12 H 0.073 0.927 13 C -0.562 4.562 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.744 3.256 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.100 4.100 22 Cl -0.213 7.213 23 C -0.203 4.203 24 C -0.054 4.054 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.146 0.854 28 H 0.163 0.837 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.465 6.643 -6.433 11.283 hybrid contribution 1.307 -0.486 0.175 1.405 sum -5.157 6.158 -6.258 10.182 Atomic orbital electron populations 1.81184 1.12826 1.08106 1.08014 1.28472 0.94690 0.93608 0.93573 1.19775 0.83172 1.04918 1.03389 1.21829 0.88790 0.78662 0.81888 1.90592 1.58398 1.41299 1.43172 1.19813 0.92811 1.07793 1.03551 1.20942 0.95035 0.93366 0.93867 1.21427 0.93214 1.04804 1.03360 1.19602 0.84550 0.89629 0.91060 1.86122 1.17924 1.66515 1.50787 1.20685 0.97491 0.87251 0.79801 0.92722 1.21027 1.07393 1.25339 1.02480 0.90353 1.24990 0.98462 0.95870 0.94588 1.69793 1.39693 1.36723 1.06144 0.86103 0.81384 0.79193 0.78955 1.19215 1.20452 1.20431 1.25782 0.83301 0.98148 1.02807 1.98653 1.42855 1.86420 1.93326 1.20233 0.95617 1.03370 1.01048 1.20916 0.92071 0.95885 0.96553 0.83965 0.83939 0.85387 0.83748 0.91679 0.84675 0.90528 0.84999 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.01 18.54 42.15 0.78 -5.23 16 2 C 0.21 2.35 14.67 -20.76 -0.30 2.04 16 3 C -0.07 -0.48 4.79 -30.67 -0.15 -0.63 16 4 C 0.41 4.66 7.09 -30.82 -0.22 4.44 16 5 O -0.46 -7.11 16.01 5.55 0.09 -7.02 16 6 C -0.24 -2.97 5.87 -105.06 -0.62 -3.58 16 7 C -0.01 -0.21 9.57 -39.32 -0.38 -0.58 16 8 C -0.21 -3.60 6.97 -39.68 -0.28 -3.88 16 9 C 0.20 3.50 5.97 -38.96 -0.23 3.27 16 10 O -0.30 -6.17 9.72 -18.69 -0.18 -6.35 16 11 C 0.20 4.48 2.19 -27.88 -0.06 4.41 16 12 H 0.06 1.28 5.38 -51.93 -0.28 1.00 16 13 C -0.52 -12.69 8.89 -34.44 -0.31 -13.00 16 14 H 0.08 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 16 N -0.89 -21.80 11.29 55.43 0.63 -21.18 16 17 Si 0.92 18.82 29.54 -169.99 -5.02 13.80 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.04 -0.79 6.17 37.16 0.23 -0.56 16 22 Cl -0.24 -4.53 25.57 -51.86 -1.33 -5.86 16 23 C -0.18 -2.51 9.95 -39.67 -0.39 -2.90 16 24 C -0.04 -0.38 9.44 -39.31 -0.37 -0.75 16 25 H 0.14 0.46 8.08 -51.93 -0.42 0.05 16 26 H 0.14 0.45 8.09 -51.92 -0.42 0.03 16 27 H 0.13 1.92 7.64 -52.49 -0.40 1.52 16 28 H 0.15 2.73 5.08 -52.49 -0.27 2.47 16 29 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 30 H 0.14 3.08 5.95 -51.93 -0.31 2.77 16 31 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.13 0.74 7.04 -52.48 -0.37 0.37 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -28.69 308.42 -6.41 -35.10 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -2.86 Total: 2.37 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.17 Total: -10.27 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 1.41 Total: -26.41 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.09 Total: -13.37 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 17 Polarization: -4.53 SS G_CDS: -1.33 Total: -5.86 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.69 -6.41 -35.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds