Wall clock time and date at job start Tue Mar 31 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47240 * 309.53802 * 3 2 1 5 5 O 1.21292 * 119.99894 * 359.97438 * 4 3 2 6 6 C 1.46860 * 120.00083 * 180.02562 * 4 3 2 7 7 C 1.40038 * 120.11423 * 179.97438 * 6 4 3 8 8 C 1.37112 * 119.88249 * 179.69724 * 7 6 4 9 9 C 1.39076 * 120.11847 * 0.25983 * 8 7 6 10 10 O 1.35661 * 119.88868 * 179.97438 * 9 8 7 11 11 C 1.42905 * 117.00007 * 356.48766 * 10 9 8 12 12 H 1.09000 * 109.46788 * 27.18924 * 11 10 9 13 13 C 1.50694 * 109.47149 * 147.18999 * 11 10 9 14 14 H 1.08001 * 120.00529 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99719 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99986 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99807 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47365 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47225 * 120.00436 * 17 15 13 20 20 H 1.48505 * 109.47089 * 240.00021 * 17 15 13 21 21 C 1.53002 * 109.46893 * 267.19446 * 11 10 9 22 22 Cl 1.80303 * 109.47122 * 64.99765 * 21 11 10 23 23 C 1.39082 * 120.23010 * 0.02562 * 9 8 7 24 24 C 1.37121 * 120.11325 * 359.97438 * 23 9 8 25 25 H 1.09000 * 109.47227 * 189.53947 * 3 2 1 26 26 H 1.09008 * 109.47600 * 69.53916 * 3 2 1 27 27 H 1.07999 * 120.05775 * 359.97438 * 7 6 4 28 28 H 1.08002 * 119.94330 * 180.28112 * 8 7 6 29 29 H 0.97007 * 119.99873 * 179.97438 * 16 15 13 30 30 H 1.09003 * 109.46862 * 184.99460 * 21 11 10 31 31 H 1.08994 * 109.47173 * 304.99605 * 21 11 10 32 32 H 1.07995 * 119.94516 * 180.02562 * 23 9 8 33 33 H 1.08003 * 120.05634 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1107 -0.9036 1.0957 5 8 2.3228 -1.4905 1.8070 6 6 4.5547 -1.0733 1.3030 7 6 5.0245 -1.9126 2.3209 8 6 6.3736 -2.0724 2.5062 9 6 7.2749 -1.3987 1.6890 10 8 8.6088 -1.5598 1.8769 11 6 9.0151 -2.3738 2.9790 12 1 8.2353 -3.1030 3.1989 13 6 10.2916 -3.0937 2.6280 14 1 10.7474 -2.9444 1.6604 15 6 10.8782 -3.9423 3.5428 16 7 10.3235 -4.1239 4.7213 17 14 12.4610 -4.8342 3.1080 18 1 12.8770 -4.4619 1.7320 19 1 13.5259 -4.4496 4.0689 20 1 12.2379 -6.3007 3.1775 21 6 9.2484 -1.4907 4.2064 22 17 7.6881 -0.7437 4.7147 23 6 6.8136 -0.5593 0.6805 24 6 5.4665 -0.3925 0.4868 25 1 2.9708 1.0143 0.1703 26 1 2.9715 -0.3584 -0.9629 27 1 4.3254 -2.4365 2.9558 28 1 6.7370 -2.7230 3.2880 29 1 10.7361 -4.7212 5.3647 30 1 9.6429 -2.0979 5.0212 31 1 9.9632 -0.7060 3.9589 32 1 7.5176 -0.0387 0.0484 33 1 5.1093 0.2592 -0.2969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526755.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:26 Heat of formation + Delta-G solvation = -51.774936 kcal Electronic energy + Delta-G solvation = -20035.674883 eV Core-core repulsion = 16666.172195 eV Total energy + Delta-G solvation = -3369.502688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32379 -40.37157 -38.16247 -37.40047 -36.57674 -35.35548 -32.85068 -32.19883 -31.12520 -30.12474 -27.28480 -24.96797 -24.14862 -22.46412 -21.10507 -19.28240 -18.84574 -18.35996 -17.68208 -16.88115 -16.51237 -16.45907 -16.17436 -15.72309 -15.50204 -14.92093 -14.63274 -14.53910 -14.29115 -13.92176 -13.81780 -13.69254 -13.45275 -13.39507 -13.17220 -12.94061 -12.74119 -12.52312 -12.37616 -12.22368 -11.77999 -11.41509 -11.18582 -10.95235 -10.81294 -10.55843 -9.87799 -8.94490 -8.37750 -6.53372 -0.14871 0.57593 1.39713 1.45176 1.51426 1.57169 1.60706 1.66768 1.82855 2.26890 2.68834 2.89815 2.97019 2.99495 3.26150 3.93468 4.00814 4.26260 4.34688 4.35406 4.43422 4.58696 4.58959 4.64695 4.79972 4.90213 5.13597 5.21547 5.36647 5.51118 5.52888 5.60914 5.84521 5.90943 6.47791 6.54985 6.61491 6.79467 7.19428 8.68811 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.003553 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.259472 B = 7878.683301 C = 8163.587424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.237 3.763 3 C -0.062 4.062 4 C 0.417 3.583 5 O -0.508 6.508 6 C -0.230 4.230 7 C -0.032 4.032 8 C -0.225 4.225 9 C 0.162 3.838 10 O -0.319 6.319 11 C 0.210 3.790 12 H 0.033 0.967 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.026 3.974 16 N -0.910 5.910 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.278 1.278 21 C -0.028 4.028 22 Cl -0.221 7.221 23 C -0.182 4.182 24 C -0.006 4.006 25 H 0.195 0.805 26 H 0.196 0.804 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.275 0.725 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 8.976 -9.551 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.080 4.080 3 C -0.100 4.100 4 C 0.298 3.702 5 O -0.387 6.387 6 C -0.231 4.231 7 C -0.051 4.051 8 C -0.244 4.244 9 C 0.115 3.885 10 O -0.232 6.232 11 C 0.154 3.846 12 H 0.051 0.949 13 C -0.583 4.583 14 H 0.089 0.911 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.801 3.199 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.204 1.204 21 C -0.091 4.091 22 Cl -0.195 7.195 23 C -0.201 4.201 24 C -0.023 4.023 25 H 0.212 0.788 26 H 0.213 0.787 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.553 8.710 -9.075 14.183 hybrid contribution 1.175 -1.074 0.962 1.860 sum -5.378 7.636 -8.113 12.372 Atomic orbital electron populations 1.81216 1.15247 1.10444 1.10243 1.29256 0.95565 0.91580 0.91575 1.20166 0.80101 1.06379 1.03376 1.22307 0.87594 0.78173 0.82147 1.90612 1.59221 1.43498 1.45394 1.20115 0.94346 1.06340 1.02299 1.20980 0.93966 0.94741 0.95393 1.21170 0.94235 1.05475 1.03493 1.20035 0.83168 0.92017 0.93290 1.86044 1.20063 1.66788 1.50291 1.20324 0.96068 0.87306 0.80858 0.94947 1.21279 1.08401 1.26264 1.02371 0.91125 1.25724 1.01082 0.96363 0.94411 1.69893 1.40847 1.37157 1.06826 0.85203 0.78054 0.77883 0.78804 1.18869 1.19852 1.20362 1.25426 0.84068 0.97849 1.01766 1.98643 1.41692 1.86003 1.93166 1.20672 0.97583 1.02093 0.99722 1.21571 0.89964 0.94477 0.96318 0.78821 0.78699 0.86584 0.86929 0.91549 0.86699 0.90234 0.82814 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.24 18.54 20.00 0.37 -12.86 16 2 C 0.24 4.34 14.67 89.44 1.31 5.65 16 3 C -0.06 -0.41 4.79 28.04 0.13 -0.28 16 4 C 0.42 7.84 7.09 27.94 0.20 8.04 16 5 O -0.51 -15.08 16.01 -3.07 -0.05 -15.13 16 6 C -0.23 -4.93 5.87 -20.15 -0.12 -5.05 16 7 C -0.03 -0.98 9.57 22.44 0.21 -0.77 16 8 C -0.22 -8.02 6.97 22.21 0.15 -7.87 16 9 C 0.16 5.62 5.97 22.67 0.14 5.76 16 10 O -0.32 -13.34 9.72 -89.77 -0.87 -14.22 16 11 C 0.21 9.72 2.19 29.85 0.07 9.78 16 12 H 0.03 1.65 5.38 -2.39 -0.01 1.64 16 13 C -0.55 -27.29 8.89 25.60 0.23 -27.06 16 14 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 15 C 0.03 1.25 5.29 84.66 0.45 1.70 16 16 N -0.91 -46.25 11.29 21.45 0.24 -46.01 16 17 Si 0.98 38.98 29.54 68.60 2.03 41.01 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 21 C -0.03 -1.23 6.17 71.98 0.44 -0.78 16 22 Cl -0.22 -8.61 25.57 -2.72 -0.07 -8.68 16 23 C -0.18 -4.32 9.95 22.21 0.22 -4.10 16 24 C -0.01 -0.09 9.44 22.44 0.21 0.12 16 25 H 0.20 -0.49 8.08 -2.39 -0.02 -0.50 16 26 H 0.20 -0.53 8.09 -2.38 -0.02 -0.55 16 27 H 0.12 3.70 7.64 -2.91 -0.02 3.67 16 28 H 0.11 4.66 5.08 -2.91 -0.01 4.65 16 29 H 0.27 13.20 8.31 -92.70 -0.77 12.42 16 30 H 0.12 5.49 5.95 -2.39 -0.01 5.48 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.20 0.26 7.04 -2.91 -0.02 0.24 16 Total: -1.00 -70.15 308.42 6.46 -63.70 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.16 Total: 7.06 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.65 Total: -14.86 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.61 Total: -58.88 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.92 Total: -29.35 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 17 Polarization: -8.61 SS G_CDS: -0.07 Total: -8.68 kcal Total: -70.15 6.46 -63.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526755.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.920 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds