Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48504 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47210 * 300.00147 * 3 2 1 6 6 H 1.48506 * 109.46743 * 60.00429 * 3 2 1 7 7 C 1.37882 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99670 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46888 * 300.00166 * 9 7 2 11 11 C 1.52990 * 109.47077 * 60.00417 * 9 7 2 12 12 Cl 1.80301 * 109.47025 * 184.99869 * 11 9 7 13 13 O 1.42900 * 109.46963 * 180.02562 * 9 7 2 14 14 C 1.35763 * 117.00331 * 147.31201 * 13 9 7 15 15 C 1.39492 * 119.70191 * 176.43456 * 14 13 9 16 16 C 1.36518 * 120.83235 * 180.02562 * 15 14 13 17 17 C 1.39590 * 119.73015 * 0.02562 * 16 15 14 18 18 C 1.41500 * 119.80926 * 359.97438 * 17 16 15 19 19 C 1.46431 * 118.37659 * 179.73023 * 18 17 16 20 20 C 1.34255 * 119.39803 * 0.49259 * 19 18 17 21 21 N 1.36582 * 122.38046 * 359.50831 * 20 19 18 22 22 H 0.97000 * 118.84398 * 180.25245 * 21 20 19 23 23 C 1.34757 * 122.30264 * 0.23837 * 21 20 19 24 24 O 1.21806 * 120.36354 * 180.02562 * 23 21 20 25 25 C 1.38339 * 119.69570 * 356.46292 * 14 13 9 26 26 H 0.97005 * 119.99885 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47296 * 304.99400 * 11 9 7 28 28 H 1.09002 * 109.47701 * 64.99969 * 11 9 7 29 29 H 1.08005 * 119.58284 * 0.05253 * 15 14 13 30 30 H 1.07993 * 120.13861 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.30644 * 180.25355 * 19 18 17 32 32 H 1.08007 * 118.81151 * 179.77128 * 20 19 18 33 33 H 1.08002 * 120.32307 * 359.95522 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8897 11 6 0.3710 -2.5799 -1.2494 12 17 -0.6395 -4.0714 -1.1772 13 8 2.1795 -3.5853 -0.0005 14 6 1.8063 -4.7154 0.6527 15 6 2.6367 -5.8359 0.6254 16 6 2.2839 -6.9843 1.2737 17 6 1.0773 -7.0416 1.9733 18 6 0.2289 -5.9096 2.0063 19 6 -1.0320 -6.0062 2.7445 20 6 -1.3419 -7.1516 3.3726 21 7 -0.5252 -8.2460 3.3432 22 1 -0.8015 -9.0487 3.8124 23 6 0.6508 -8.2495 2.6852 24 8 1.3515 -9.2458 2.6819 25 6 0.6055 -4.7454 1.3390 26 1 -0.4850 0.8401 0.0004 27 1 -0.2766 -1.7042 -1.2949 28 1 1.0023 -2.6115 -2.1374 29 1 3.5708 -5.7942 0.0848 30 1 2.9355 -7.8450 1.2455 31 1 -1.7049 -5.1625 2.7866 32 1 -2.2726 -7.2112 3.9174 33 1 -0.0339 -3.8752 1.3575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233723349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = -49.261273 kcal Electronic energy + Delta-G solvation = -20744.961829 eV Core-core repulsion = 17375.568142 eV Total energy + Delta-G solvation = -3369.393687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76555 -39.15904 -36.91354 -36.31102 -34.90186 -33.54236 -31.97299 -30.16435 -29.37511 -28.79724 -25.42413 -24.03583 -23.28688 -22.06105 -20.67876 -18.61778 -18.03299 -17.60830 -16.85610 -16.09254 -15.28591 -15.22228 -15.02570 -14.62924 -14.48440 -13.83214 -13.49990 -13.14091 -12.94940 -12.53754 -12.30847 -12.09005 -11.95890 -11.84258 -11.59484 -11.22938 -11.04288 -10.85625 -10.70490 -10.28473 -9.96792 -9.74538 -9.49358 -9.33132 -9.25973 -8.75625 -7.60857 -7.57398 -6.51555 -4.59241 1.10453 1.32246 2.43881 3.06721 3.09429 3.16846 3.20591 3.21982 3.32552 3.93152 4.27620 4.36981 4.63483 4.79430 4.85388 5.12955 5.26570 5.50989 5.56285 5.84391 5.98085 6.04363 6.14535 6.19123 6.27826 6.47667 6.66456 6.68541 6.84546 6.85379 7.02310 7.14211 7.17789 7.47058 7.66427 8.11582 8.19037 8.57558 9.08965 10.55642 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.004512 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.305333 B = 6204.545255 C = 6386.895039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.523 4.523 8 H 0.078 0.922 9 C 0.203 3.797 10 H 0.055 0.945 11 C -0.037 4.037 12 Cl -0.238 7.238 13 O -0.304 6.304 14 C 0.195 3.805 15 C -0.176 4.176 16 C -0.018 4.018 17 C -0.210 4.210 18 C 0.036 3.964 19 C -0.187 4.187 20 C 0.093 3.907 21 N -0.639 5.639 22 H 0.408 0.592 23 C 0.553 3.447 24 O -0.547 6.547 25 C -0.204 4.204 26 H 0.272 0.728 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 -8.488 4.237 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.148 3.852 10 H 0.072 0.928 11 C -0.100 4.100 12 Cl -0.212 7.212 13 O -0.216 6.216 14 C 0.146 3.854 15 C -0.195 4.195 16 C -0.037 4.037 17 C -0.214 4.214 18 C 0.034 3.966 19 C -0.211 4.211 20 C -0.027 4.027 21 N -0.275 5.275 22 H 0.244 0.756 23 C 0.349 3.651 24 O -0.427 6.427 25 C -0.223 4.223 26 H 0.082 0.918 27 H 0.153 0.847 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.142 -8.833 4.020 10.201 hybrid contribution -0.238 0.707 0.171 0.765 sum -3.380 -8.126 4.192 9.748 Atomic orbital electron populations 1.69795 1.06006 1.28096 1.48622 1.24974 0.95194 0.99868 0.93823 0.86118 0.80047 0.81548 0.78010 1.19227 1.20479 1.20450 1.21051 0.94450 0.87760 1.52778 0.90393 1.20640 0.87486 0.82831 0.94245 0.92805 1.25767 0.95485 0.86887 1.01863 1.98652 1.75763 1.47835 1.98974 1.86140 1.46355 1.21284 1.67832 1.19342 0.91343 0.87102 0.87630 1.20164 1.01708 0.91626 1.05973 1.20411 0.93887 0.97000 0.92425 1.19490 0.99159 0.93946 1.08772 1.18758 0.92388 0.92218 0.93236 1.21564 0.98063 0.98238 1.03204 1.21269 0.95148 0.86968 0.99318 1.43101 1.19712 1.15448 1.49223 0.75589 1.18161 0.80021 0.88369 0.78543 1.90854 1.53552 1.35279 1.63048 1.21415 0.98611 0.99439 1.02830 0.91773 0.84729 0.90611 0.85048 0.84814 0.83684 0.82812 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.10 11.29 55.43 0.63 -21.47 16 2 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.52 -13.05 8.89 -34.44 -0.31 -13.35 16 8 H 0.08 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.20 4.67 2.19 -27.89 -0.06 4.61 16 10 H 0.05 1.30 5.38 -51.93 -0.28 1.02 16 11 C -0.04 -0.81 6.17 37.15 0.23 -0.58 16 12 Cl -0.24 -4.70 25.55 -51.86 -1.32 -6.02 16 13 O -0.30 -6.71 9.72 -19.00 -0.18 -6.90 16 14 C 0.19 3.83 5.97 -39.08 -0.23 3.60 16 15 C -0.18 -3.07 9.89 -39.74 -0.39 -3.46 16 16 C -0.02 -0.30 9.60 -39.70 -0.38 -0.68 16 17 C -0.21 -3.57 5.90 -104.80 -0.62 -4.19 16 18 C 0.04 0.60 5.89 -104.94 -0.62 -0.02 16 19 C -0.19 -2.45 10.02 -37.69 -0.38 -2.83 16 20 C 0.09 0.96 11.07 -16.84 -0.19 0.77 16 21 N -0.64 -7.46 5.22 -13.39 -0.07 -7.53 16 22 H 0.41 3.54 8.87 -40.82 -0.36 3.18 16 23 C 0.55 8.82 7.91 -12.92 -0.10 8.72 16 24 O -0.55 -10.02 17.36 5.09 0.09 -9.93 16 25 C -0.20 -3.81 6.80 -39.12 -0.27 -4.08 16 26 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 27 H 0.13 3.13 5.95 -51.93 -0.31 2.82 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.13 2.02 7.78 -52.49 -0.41 1.61 16 31 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.15 2.89 5.07 -52.49 -0.27 2.63 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -28.11 297.09 -7.68 -35.79 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.86 Total: 7.41 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.41 Total: -10.01 kcal Atomic # 7 Polarization: -29.56 SS G_CDS: 0.56 Total: -29.00 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.10 Total: -16.83 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 17 Polarization: -4.70 SS G_CDS: -1.32 Total: -6.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.11 -7.68 -35.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233723349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.469 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds