Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48504 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47210 * 300.00147 * 3 2 1 6 6 H 1.48506 * 109.46743 * 60.00429 * 3 2 1 7 7 C 1.37882 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99670 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46888 * 300.00166 * 9 7 2 11 11 C 1.52990 * 109.47077 * 60.00417 * 9 7 2 12 12 Cl 1.80301 * 109.47025 * 184.99869 * 11 9 7 13 13 O 1.42900 * 109.46963 * 180.02562 * 9 7 2 14 14 C 1.35763 * 117.00331 * 147.31201 * 13 9 7 15 15 C 1.39492 * 119.70191 * 176.43456 * 14 13 9 16 16 C 1.36518 * 120.83235 * 180.02562 * 15 14 13 17 17 C 1.39590 * 119.73015 * 0.02562 * 16 15 14 18 18 C 1.41500 * 119.80926 * 359.97438 * 17 16 15 19 19 C 1.46431 * 118.37659 * 179.73023 * 18 17 16 20 20 C 1.34255 * 119.39803 * 0.49259 * 19 18 17 21 21 N 1.36582 * 122.38046 * 359.50831 * 20 19 18 22 22 H 0.97000 * 118.84398 * 180.25245 * 21 20 19 23 23 C 1.34757 * 122.30264 * 0.23837 * 21 20 19 24 24 O 1.21806 * 120.36354 * 180.02562 * 23 21 20 25 25 C 1.38339 * 119.69570 * 356.46292 * 14 13 9 26 26 H 0.97005 * 119.99885 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47296 * 304.99400 * 11 9 7 28 28 H 1.09002 * 109.47701 * 64.99969 * 11 9 7 29 29 H 1.08005 * 119.58284 * 0.05253 * 15 14 13 30 30 H 1.07993 * 120.13861 * 180.02562 * 16 15 14 31 31 H 1.07999 * 120.30644 * 180.25355 * 19 18 17 32 32 H 1.08007 * 118.81151 * 179.77128 * 20 19 18 33 33 H 1.08002 * 120.32307 * 359.95522 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8897 11 6 0.3710 -2.5799 -1.2494 12 17 -0.6395 -4.0714 -1.1772 13 8 2.1795 -3.5853 -0.0005 14 6 1.8063 -4.7154 0.6527 15 6 2.6367 -5.8359 0.6254 16 6 2.2839 -6.9843 1.2737 17 6 1.0773 -7.0416 1.9733 18 6 0.2289 -5.9096 2.0063 19 6 -1.0320 -6.0062 2.7445 20 6 -1.3419 -7.1516 3.3726 21 7 -0.5252 -8.2460 3.3432 22 1 -0.8015 -9.0487 3.8124 23 6 0.6508 -8.2495 2.6852 24 8 1.3515 -9.2458 2.6819 25 6 0.6055 -4.7454 1.3390 26 1 -0.4850 0.8401 0.0004 27 1 -0.2766 -1.7042 -1.2949 28 1 1.0023 -2.6115 -2.1374 29 1 3.5708 -5.7942 0.0848 30 1 2.9355 -7.8450 1.2455 31 1 -1.7049 -5.1625 2.7866 32 1 -2.2726 -7.2112 3.9174 33 1 -0.0339 -3.8752 1.3575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233723349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -65.707313 kcal Electronic energy + Delta-G solvation = -20745.674983 eV Core-core repulsion = 17375.568142 eV Total energy + Delta-G solvation = -3370.106841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99616 -40.63787 -38.29552 -37.55400 -36.55889 -35.35157 -33.21155 -31.74045 -30.81867 -30.07542 -27.28221 -25.41056 -24.51520 -23.49882 -22.15809 -19.87312 -19.40053 -18.89890 -18.53818 -17.46734 -16.86621 -16.47188 -16.31467 -16.19793 -16.04619 -15.32615 -14.83786 -14.52867 -14.38258 -13.94088 -13.82243 -13.60673 -13.37470 -13.15756 -12.98596 -12.92211 -12.73516 -12.41065 -12.27164 -11.87151 -11.43701 -11.24440 -11.16186 -10.98300 -10.58793 -10.56442 -9.08152 -8.73444 -8.37530 -6.52677 -0.11997 0.00799 1.24557 1.39698 1.45238 1.56862 1.61123 1.94847 2.06053 2.25932 2.63376 2.97582 3.05711 3.57229 3.72551 3.82455 4.15024 4.24264 4.31141 4.33898 4.40629 4.61611 4.78845 4.85550 4.96175 5.01969 5.19751 5.33107 5.43649 5.48751 5.56790 5.75180 5.83624 5.87040 6.05891 6.45686 6.76959 6.97826 7.19567 8.69377 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.004512 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.305333 B = 6204.545255 C = 6386.895039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.209 3.791 10 H 0.039 0.961 11 C -0.028 4.028 12 Cl -0.219 7.219 13 O -0.322 6.322 14 C 0.168 3.832 15 C -0.183 4.183 16 C -0.016 4.016 17 C -0.228 4.228 18 C 0.038 3.962 19 C -0.224 4.224 20 C 0.133 3.867 21 N -0.622 5.622 22 H 0.428 0.572 23 C 0.549 3.451 24 O -0.574 6.574 25 C -0.217 4.217 26 H 0.276 0.724 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.215 0.785 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.909 -9.470 5.450 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.084 0.916 9 C 0.154 3.846 10 H 0.057 0.943 11 C -0.091 4.091 12 Cl -0.193 7.193 13 O -0.235 6.235 14 C 0.120 3.880 15 C -0.202 4.202 16 C -0.035 4.035 17 C -0.231 4.231 18 C 0.036 3.964 19 C -0.247 4.247 20 C 0.012 3.988 21 N -0.259 5.259 22 H 0.267 0.733 23 C 0.345 3.655 24 O -0.457 6.457 25 C -0.236 4.236 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.177 0.823 32 H 0.232 0.768 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.512 -9.843 5.252 12.035 hybrid contribution 0.069 0.833 -0.095 0.842 sum -4.443 -9.010 5.157 11.292 Atomic orbital electron populations 1.69869 1.06928 1.28980 1.48557 1.25658 0.95934 1.02413 0.93120 0.85228 0.78686 0.77938 0.78235 1.19421 1.19704 1.19953 1.21253 0.94161 0.89288 1.53949 0.91603 1.20385 0.87399 0.82810 0.94000 0.94348 1.25419 0.95231 0.87168 1.01256 1.98643 1.75145 1.46557 1.98981 1.86077 1.46477 1.21923 1.68999 1.19634 0.92613 0.86944 0.88768 1.20296 1.02041 0.91291 1.06534 1.20608 0.94176 0.96956 0.91763 1.19790 0.99435 0.94737 1.09163 1.19085 0.93732 0.91125 0.92470 1.21750 0.97398 1.00455 1.05107 1.22056 0.95612 0.84782 0.96337 1.43052 1.18336 1.16770 1.47709 0.73262 1.18054 0.81106 0.87466 0.78857 1.90842 1.54792 1.35911 1.64199 1.21310 0.98368 0.99865 1.04061 0.91390 0.86215 0.90677 0.83863 0.83431 0.82316 0.76850 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.63 11.29 21.45 0.24 -45.38 16 2 C 0.03 1.50 5.29 84.66 0.45 1.95 16 3 Si 0.98 39.50 29.54 68.60 2.03 41.52 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.55 -28.28 8.89 25.60 0.23 -28.05 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 10.03 2.19 29.85 0.07 10.09 16 10 H 0.04 1.96 5.38 -2.39 -0.01 1.94 16 11 C -0.03 -1.24 6.17 71.98 0.44 -0.80 16 12 Cl -0.22 -8.73 25.55 -2.72 -0.07 -8.80 16 13 O -0.32 -14.81 9.72 -90.90 -0.88 -15.70 16 14 C 0.17 6.83 5.97 22.60 0.13 6.97 16 15 C -0.18 -6.50 9.89 22.17 0.22 -6.28 16 16 C -0.02 -0.54 9.60 22.19 0.21 -0.32 16 17 C -0.23 -7.53 5.90 -19.98 -0.12 -7.65 16 18 C 0.04 1.24 5.89 -20.07 -0.12 1.12 16 19 C -0.22 -5.31 10.02 23.50 0.24 -5.07 16 20 C 0.13 2.10 11.07 83.04 0.92 3.02 16 21 N -0.62 -12.11 5.22 -314.45 -1.64 -13.75 16 22 H 0.43 5.47 8.87 -92.71 -0.82 4.65 16 23 C 0.55 16.36 7.91 86.41 0.68 17.05 16 24 O -0.57 -20.12 17.36 -4.69 -0.08 -20.20 16 25 C -0.22 -8.30 6.80 22.57 0.15 -8.15 16 26 H 0.28 13.05 8.31 -92.70 -0.77 12.28 16 27 H 0.12 5.73 5.95 -2.38 -0.01 5.72 16 28 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.15 4.38 7.78 -2.91 -0.02 4.35 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.13 5.42 5.07 -2.91 -0.01 5.40 16 Total: -1.00 -62.38 297.09 3.45 -58.93 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.35 Total: 19.52 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 3.51 Total: -16.13 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -1.40 Total: -59.13 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.96 Total: -35.90 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 17 Polarization: -8.73 SS G_CDS: -0.07 Total: -8.80 kcal Total: -62.38 3.45 -58.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233723349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.781 kcal (2) G-P(sol) polarization free energy of solvation -62.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds