Wall clock time and date at job start Tue Mar 31 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48503 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47403 * 300.00032 * 3 2 1 6 6 H 1.48499 * 109.47008 * 60.00542 * 3 2 1 7 7 C 1.37876 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99717 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47181 * 300.00390 * 9 7 2 11 11 C 1.53008 * 109.46830 * 60.00156 * 9 7 2 12 12 Cl 1.80295 * 109.46917 * 184.99847 * 11 9 7 13 13 O 1.42894 * 109.46916 * 179.97438 * 9 7 2 14 14 C 1.35832 * 116.99785 * 147.14232 * 13 9 7 15 15 C 1.38893 * 119.91242 * 356.49178 * 14 13 9 16 16 C 1.37820 * 120.09147 * 180.02562 * 15 14 13 17 17 C 1.39630 * 119.90768 * 359.97438 * 16 15 14 18 18 C 1.47749 * 120.08802 * 179.97438 * 17 16 15 19 19 N 1.31261 * 125.72818 * 359.69342 * 18 17 16 20 20 C 1.34207 * 108.63837 * 180.26543 * 19 18 17 21 21 C 1.34494 * 107.84524 * 359.97438 * 20 19 18 22 22 O 1.34430 * 125.73565 * 179.97438 * 18 17 16 23 23 C 1.39639 * 119.82630 * 0.25569 * 17 16 15 24 24 C 1.37807 * 119.90807 * 359.53195 * 23 17 16 25 25 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46941 * 305.00298 * 11 9 7 27 27 H 1.09004 * 109.46954 * 65.00005 * 11 9 7 28 28 H 1.08008 * 119.95279 * 359.97438 * 15 14 13 29 29 H 1.07996 * 120.04007 * 179.97438 * 16 15 14 30 30 H 1.08004 * 126.07970 * 180.02562 * 20 19 18 31 31 H 1.08005 * 126.35457 * 179.97438 * 21 20 19 32 32 H 1.07996 * 120.04386 * 179.72469 * 23 17 16 33 33 H 1.08004 * 119.95535 * 180.20997 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2496 12 17 -0.6395 -4.0714 -1.1773 13 8 2.1797 -3.5853 -0.0017 14 6 1.8081 -4.7149 0.6547 15 6 0.6053 -4.7491 1.3483 16 6 0.2250 -5.8932 2.0161 17 6 1.0505 -7.0191 1.9942 18 6 0.6470 -8.2475 2.7091 19 7 -0.4565 -8.4032 3.4028 20 6 -0.4731 -9.6460 3.9089 21 6 0.6519 -10.2675 3.5128 22 8 1.3506 -9.3916 2.7630 23 6 2.2613 -6.9791 1.2997 24 6 2.6323 -5.8327 0.6309 25 1 -0.4850 0.8401 0.0004 26 1 -0.2764 -1.7042 -1.2950 27 1 1.0024 -2.6114 -2.1375 28 1 -0.0325 -3.8776 1.3650 29 1 -0.7103 -5.9187 2.5554 30 1 -1.2520 -10.0718 4.5242 31 1 0.9420 -11.2801 3.7516 32 1 2.9046 -7.8464 1.2842 33 1 3.5671 -5.8021 0.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233735314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:27 Heat of formation + Delta-G solvation = 0.556139 kcal Electronic energy + Delta-G solvation = -20287.487080 eV Core-core repulsion = 16920.253638 eV Total energy + Delta-G solvation = -3367.233442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.15899 -39.57319 -37.11733 -34.91613 -34.66746 -33.55285 -31.43723 -30.75056 -29.54169 -28.06611 -25.40581 -23.49659 -23.23189 -22.11618 -21.12427 -20.27459 -18.09165 -17.30416 -16.89119 -16.51131 -15.66888 -15.34914 -14.91350 -14.61372 -14.30384 -14.11422 -13.43263 -13.16481 -13.04410 -12.84328 -12.38878 -12.06247 -11.86697 -11.79293 -11.34956 -11.20438 -11.04005 -10.88838 -10.70313 -10.47397 -10.24425 -9.82575 -9.53212 -9.34659 -8.94813 -8.72991 -8.59079 -7.35084 -6.49663 -4.57723 0.95969 1.74476 2.01867 2.74825 2.92721 3.08128 3.18032 3.23003 3.34105 3.93969 4.10986 4.18881 4.31983 4.86983 4.93042 4.98119 5.24090 5.28705 5.61396 5.68529 5.74385 5.86988 5.96423 6.15520 6.17890 6.21850 6.37314 6.51004 6.67845 6.77918 6.86817 7.02727 7.14237 7.48356 7.67999 7.79042 8.19658 8.58763 9.10475 10.57466 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.003748 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.542920 B = 7468.578419 C = 7706.070319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.523 4.523 8 H 0.078 0.922 9 C 0.202 3.798 10 H 0.055 0.945 11 C -0.038 4.038 12 Cl -0.238 7.238 13 O -0.304 6.304 14 C 0.186 3.814 15 C -0.198 4.198 16 C -0.026 4.026 17 C -0.095 4.095 18 C 0.265 3.735 19 N -0.491 5.491 20 C -0.037 4.037 21 C -0.095 4.095 22 O -0.202 6.202 23 C -0.050 4.050 24 C -0.173 4.173 25 H 0.272 0.728 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.132 0.868 30 H 0.182 0.818 31 H 0.213 0.787 32 H 0.128 0.872 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -13.263 3.488 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.096 0.904 9 C 0.148 3.852 10 H 0.072 0.928 11 C -0.100 4.100 12 Cl -0.212 7.212 13 O -0.216 6.216 14 C 0.137 3.863 15 C -0.217 4.217 16 C -0.046 4.046 17 C -0.097 4.097 18 C 0.062 3.938 19 N -0.220 5.220 20 C -0.177 4.177 21 C -0.165 4.165 22 O -0.089 6.089 23 C -0.069 4.069 24 C -0.192 4.192 25 H 0.082 0.918 26 H 0.153 0.847 27 H 0.094 0.906 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.199 0.801 31 H 0.229 0.771 32 H 0.146 0.854 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.718 -12.714 3.434 13.189 hybrid contribution 0.438 0.060 0.046 0.444 sum 1.156 -12.653 3.480 13.174 Atomic orbital electron populations 1.69798 1.06004 1.28120 1.48516 1.24985 0.95200 0.99896 0.93845 0.86110 0.80002 0.81549 0.78003 1.19242 1.20498 1.20452 1.21043 0.94427 0.87760 1.52859 0.90394 1.20648 0.87480 0.82847 0.94267 0.92773 1.25772 0.95480 0.86900 1.01864 1.98652 1.75760 1.47860 1.98975 1.86149 1.46408 1.21345 1.67734 1.19402 0.91586 0.87223 0.88094 1.21490 0.98266 1.00181 1.01717 1.20833 0.98063 0.90274 0.95395 1.17029 0.98199 0.88941 1.05509 1.24055 0.86414 0.86455 0.96872 1.70724 1.19844 1.18415 1.12990 1.23336 0.99530 0.90932 1.03859 1.24974 0.94619 0.96877 1.00056 1.84512 1.46102 1.21909 1.56418 1.20812 0.94284 0.97418 0.94402 1.20252 1.01714 0.91489 1.05743 0.91751 0.84729 0.90598 0.83524 0.84979 0.80108 0.77092 0.85431 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.41 11.29 55.43 0.63 -21.78 16 2 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 3 Si 0.92 19.37 29.54 -169.99 -5.02 14.35 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.52 -13.15 8.89 -34.44 -0.31 -13.45 16 8 H 0.08 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.20 4.70 2.19 -27.87 -0.06 4.64 16 10 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16 11 C -0.04 -0.82 6.17 37.16 0.23 -0.60 16 12 Cl -0.24 -4.79 25.58 -51.86 -1.33 -6.12 16 13 O -0.30 -6.69 9.72 -19.21 -0.19 -6.87 16 14 C 0.19 3.61 5.97 -39.09 -0.23 3.37 16 15 C -0.20 -3.74 7.01 -39.49 -0.28 -4.01 16 16 C -0.03 -0.45 9.68 -39.21 -0.38 -0.83 16 17 C -0.10 -1.56 5.87 -104.97 -0.62 -2.18 16 18 C 0.26 4.19 7.89 -13.91 -0.11 4.08 16 19 N -0.49 -7.75 10.91 -11.74 -0.13 -7.88 16 20 C -0.04 -0.44 11.87 -17.84 -0.21 -0.65 16 21 C -0.09 -1.00 12.17 29.41 0.36 -0.64 16 22 O -0.20 -2.80 10.52 3.94 0.04 -2.76 16 23 C -0.05 -0.75 9.71 -39.22 -0.38 -1.13 16 24 C -0.17 -2.88 9.97 -39.49 -0.39 -3.27 16 25 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.13 3.18 5.95 -51.93 -0.31 2.87 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.15 2.95 5.09 -52.48 -0.27 2.68 16 29 H 0.13 2.18 7.83 -52.49 -0.41 1.77 16 30 H 0.18 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.21 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.13 1.61 7.90 -52.49 -0.41 1.20 16 33 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -27.11 302.15 -6.83 -33.95 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.92 Total: 5.75 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.48 Total: -13.19 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.50 Total: -29.66 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.15 Total: -9.63 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 17 Polarization: -4.79 SS G_CDS: -1.33 Total: -6.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.11 -6.83 -33.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233735314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.505 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds