Wall clock time and date at job start Tue Mar 31 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48503 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47403 * 300.00032 * 3 2 1 6 6 H 1.48499 * 109.47008 * 60.00542 * 3 2 1 7 7 C 1.37876 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99717 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47181 * 300.00390 * 9 7 2 11 11 C 1.53008 * 109.46830 * 60.00156 * 9 7 2 12 12 Cl 1.80295 * 109.46917 * 184.99847 * 11 9 7 13 13 O 1.42894 * 109.46916 * 179.97438 * 9 7 2 14 14 C 1.35832 * 116.99785 * 147.14232 * 13 9 7 15 15 C 1.38893 * 119.91242 * 356.49178 * 14 13 9 16 16 C 1.37820 * 120.09147 * 180.02562 * 15 14 13 17 17 C 1.39630 * 119.90768 * 359.97438 * 16 15 14 18 18 C 1.47749 * 120.08802 * 179.97438 * 17 16 15 19 19 N 1.31261 * 125.72818 * 359.69342 * 18 17 16 20 20 C 1.34207 * 108.63837 * 180.26543 * 19 18 17 21 21 C 1.34494 * 107.84524 * 359.97438 * 20 19 18 22 22 O 1.34430 * 125.73565 * 179.97438 * 18 17 16 23 23 C 1.39639 * 119.82630 * 0.25569 * 17 16 15 24 24 C 1.37807 * 119.90807 * 359.53195 * 23 17 16 25 25 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46941 * 305.00298 * 11 9 7 27 27 H 1.09004 * 109.46954 * 65.00005 * 11 9 7 28 28 H 1.08008 * 119.95279 * 359.97438 * 15 14 13 29 29 H 1.07996 * 120.04007 * 179.97438 * 16 15 14 30 30 H 1.08004 * 126.07970 * 180.02562 * 20 19 18 31 31 H 1.08005 * 126.35457 * 179.97438 * 21 20 19 32 32 H 1.07996 * 120.04386 * 179.72469 * 23 17 16 33 33 H 1.08004 * 119.95535 * 180.20997 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2496 12 17 -0.6395 -4.0714 -1.1773 13 8 2.1797 -3.5853 -0.0017 14 6 1.8081 -4.7149 0.6547 15 6 0.6053 -4.7491 1.3483 16 6 0.2250 -5.8932 2.0161 17 6 1.0505 -7.0191 1.9942 18 6 0.6470 -8.2475 2.7091 19 7 -0.4565 -8.4032 3.4028 20 6 -0.4731 -9.6460 3.9089 21 6 0.6519 -10.2675 3.5128 22 8 1.3506 -9.3916 2.7630 23 6 2.2613 -6.9791 1.2997 24 6 2.6323 -5.8327 0.6309 25 1 -0.4850 0.8401 0.0004 26 1 -0.2764 -1.7042 -1.2950 27 1 1.0024 -2.6114 -2.1375 28 1 -0.0325 -3.8776 1.3650 29 1 -0.7103 -5.9187 2.5554 30 1 -1.2520 -10.0718 4.5242 31 1 0.9420 -11.2801 3.7516 32 1 2.9046 -7.8464 1.2842 33 1 3.5671 -5.8021 0.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233735314.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:26 Heat of formation + Delta-G solvation = -15.614295 kcal Electronic energy + Delta-G solvation = -20288.188282 eV Core-core repulsion = 16920.253638 eV Total energy + Delta-G solvation = -3367.934645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.17813 -41.05095 -38.59889 -36.60136 -35.73582 -35.37005 -32.72605 -32.11040 -31.18316 -29.27996 -27.28131 -24.87481 -24.48651 -23.29565 -22.45116 -21.67201 -19.43555 -18.68184 -18.60406 -17.55570 -17.07536 -16.70193 -16.37689 -16.18067 -15.57360 -15.53964 -14.96825 -14.49419 -14.34367 -14.08076 -13.97401 -13.71414 -13.37054 -13.25120 -12.93858 -12.78782 -12.58097 -12.31894 -12.27869 -11.87298 -11.56100 -11.44600 -11.21888 -11.04528 -10.58330 -10.13131 -9.94596 -8.70656 -8.37190 -6.52960 -0.23794 0.40376 0.93936 1.39902 1.45060 1.57244 1.60800 1.74449 1.82497 2.26470 2.65005 2.85819 2.98138 3.09878 3.88095 3.91823 4.12730 4.14621 4.26029 4.31658 4.40069 4.48850 4.63812 4.71736 4.85561 4.95510 5.05161 5.20226 5.21780 5.39395 5.41169 5.47841 5.57161 5.74915 5.83861 6.46167 6.76442 6.77596 7.19496 8.69491 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.003748 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.542920 B = 7468.578419 C = 7706.070319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.208 3.792 10 H 0.036 0.964 11 C -0.028 4.028 12 Cl -0.222 7.222 13 O -0.320 6.320 14 C 0.153 3.847 15 C -0.204 4.204 16 C -0.035 4.035 17 C -0.087 4.087 18 C 0.232 3.768 19 N -0.514 5.514 20 C -0.062 4.062 21 C -0.066 4.066 22 O -0.207 6.207 23 C -0.041 4.041 24 C -0.166 4.166 25 H 0.276 0.724 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.212 0.788 31 H 0.264 0.736 32 H 0.160 0.840 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -15.524 4.070 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.153 3.847 10 H 0.053 0.947 11 C -0.091 4.091 12 Cl -0.196 7.196 13 O -0.233 6.233 14 C 0.105 3.895 15 C -0.223 4.223 16 C -0.054 4.054 17 C -0.088 4.088 18 C 0.029 3.971 19 N -0.244 5.244 20 C -0.201 4.201 21 C -0.135 4.135 22 O -0.093 6.093 23 C -0.060 4.060 24 C -0.185 4.185 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.229 0.771 31 H 0.280 0.720 32 H 0.178 0.822 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.509 -15.000 4.015 15.601 hybrid contribution 0.118 0.459 0.006 0.474 sum 1.627 -14.541 4.021 15.174 Atomic orbital electron populations 1.69887 1.07065 1.28964 1.48665 1.25715 0.95931 1.02630 0.93177 0.85190 0.78758 0.77772 0.78129 1.19122 1.19749 1.20153 1.21269 0.94245 0.89193 1.53773 0.91307 1.20370 0.87433 0.83032 0.93863 0.94667 1.25438 0.95203 0.87018 1.01421 1.98645 1.75241 1.46710 1.98986 1.86083 1.46293 1.21926 1.68984 1.19679 0.92800 0.87396 0.89602 1.21306 0.98214 1.00080 1.02662 1.20819 0.98537 0.90383 0.95652 1.17186 0.98072 0.88999 1.04590 1.23772 0.87405 0.87118 0.98803 1.70673 1.20075 1.20645 1.13003 1.23948 1.01356 0.89910 1.04875 1.26040 0.93109 0.97675 0.96694 1.84511 1.46295 1.21710 1.56791 1.21107 0.94064 0.97796 0.93047 1.20522 1.01819 0.90772 1.05361 0.91467 0.86409 0.90356 0.85571 0.84962 0.77121 0.71996 0.82196 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.89 11.29 21.45 0.24 -46.64 16 2 C 0.03 1.35 5.29 84.65 0.45 1.79 16 3 Si 0.98 39.95 29.54 68.60 2.03 41.98 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.55 -28.35 8.89 25.60 0.23 -28.12 16 8 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 10.09 2.19 29.85 0.07 10.15 16 10 H 0.04 1.84 5.39 -2.39 -0.01 1.83 16 11 C -0.03 -1.27 6.17 71.98 0.44 -0.82 16 12 Cl -0.22 -9.10 25.58 -2.72 -0.07 -9.17 16 13 O -0.32 -14.50 9.72 -91.66 -0.89 -15.39 16 14 C 0.15 6.05 5.97 22.59 0.13 6.18 16 15 C -0.20 -7.99 7.01 22.33 0.16 -7.84 16 16 C -0.03 -1.22 9.68 22.51 0.22 -1.00 16 17 C -0.09 -2.78 5.87 -20.09 -0.12 -2.90 16 18 C 0.23 6.95 7.89 87.30 0.69 7.64 16 19 N -0.51 -15.47 10.91 -305.10 -3.33 -18.80 16 20 C -0.06 -1.29 11.87 83.47 0.99 -0.30 16 21 C -0.07 -1.11 12.17 66.96 0.82 -0.29 16 22 O -0.21 -5.07 10.52 -8.83 -0.09 -5.16 16 23 C -0.04 -1.17 9.71 22.51 0.22 -0.95 16 24 C -0.17 -5.37 9.97 22.33 0.22 -5.15 16 25 H 0.28 13.38 8.31 -92.71 -0.77 12.61 16 26 H 0.12 5.76 5.95 -2.39 -0.01 5.75 16 27 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.13 5.42 5.09 -2.91 -0.01 5.40 16 29 H 0.13 4.53 7.83 -2.91 -0.02 4.51 16 30 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.26 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.16 3.51 7.90 -2.91 -0.02 3.48 16 33 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.95 302.15 3.55 -56.40 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.15 Total: 18.39 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.51 Total: -21.61 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -3.09 Total: -65.44 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.98 Total: -20.55 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 17 Polarization: -9.10 SS G_CDS: -0.07 Total: -9.17 kcal Total: -59.95 3.55 -56.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233735314.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.784 kcal (2) G-P(sol) polarization free energy of solvation -59.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds