Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48493 * 109.47326 * 269.99871 * 3 2 1 5 5 H 1.48502 * 109.47038 * 30.00065 * 3 2 1 6 6 H 1.48502 * 109.47354 * 149.99525 * 3 2 1 7 7 C 1.37882 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46820 * 299.99838 * 9 7 2 11 11 C 1.52998 * 109.47147 * 59.99402 * 9 7 2 12 12 Cl 1.80307 * 109.47162 * 184.99945 * 11 9 7 13 13 O 1.42895 * 109.47577 * 180.02562 * 9 7 2 14 14 C 1.35929 * 117.00552 * 147.02629 * 13 9 7 15 15 C 1.38747 * 119.98912 * 176.22048 * 14 13 9 16 16 C 1.38070 * 120.00902 * 179.76973 * 15 14 13 17 17 C 1.38831 * 119.98685 * 0.52947 * 16 15 14 18 18 N 1.40310 * 120.01154 * 179.74579 * 17 16 15 19 19 C 1.34687 * 126.83559 * 359.68946 * 18 17 16 20 20 N 1.30869 * 108.03780 * 179.86783 * 19 18 17 21 21 C 1.33246 * 109.83782 * 0.40504 * 20 19 18 22 22 N 1.30764 * 108.99793 * 359.74911 * 21 20 19 23 23 C 1.38837 * 119.98456 * 359.72455 * 17 16 15 24 24 C 1.38064 * 119.98265 * 0.02562 * 23 17 16 25 25 H 0.97002 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47776 * 305.00241 * 11 9 7 27 27 H 1.09000 * 109.47236 * 65.00613 * 11 9 7 28 28 H 1.07997 * 120.00067 * 0.02562 * 15 14 13 29 29 H 1.07994 * 120.00835 * 180.25185 * 16 15 14 30 30 H 1.08002 * 125.98720 * 359.97438 * 19 18 17 31 31 H 1.08002 * 125.50377 * 179.72031 * 21 20 19 32 32 H 1.07993 * 120.01337 * 180.02562 * 23 17 16 33 33 H 1.08003 * 119.99169 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2489 12 17 -0.6388 -4.0720 -1.1768 13 8 2.1795 -3.5854 0.0017 14 6 1.8078 -4.7144 0.6611 15 6 2.6270 -5.8339 0.6357 16 6 2.2521 -6.9794 1.3093 17 6 1.0499 -7.0145 2.0028 18 7 0.6659 -8.1800 2.6830 19 6 1.3497 -9.3385 2.7496 20 7 0.6580 -10.1759 3.4796 21 6 -0.4701 -9.5956 3.8871 22 7 -0.5109 -8.3730 3.4249 23 6 0.2280 -5.8958 2.0236 24 6 0.6062 -4.7491 1.3540 25 1 -0.4850 0.8401 0.0004 26 1 -0.2756 -1.7049 -1.2953 27 1 1.0037 -2.6125 -2.1365 28 1 3.5601 -5.8081 0.0925 29 1 2.8917 -7.8494 1.2929 30 1 2.3029 -9.5405 2.2837 31 1 -1.2286 -10.0600 4.4998 32 1 -0.7071 -5.9224 2.5633 33 1 -0.0329 -3.8786 1.3704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233922204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = 73.953935 kcal Electronic energy + Delta-G solvation = -20361.249235 eV Core-core repulsion = 17029.491311 eV Total energy + Delta-G solvation = -3331.757924 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25323 -39.69771 -37.39998 -34.99508 -33.85293 -33.16266 -31.57511 -30.79929 -29.67597 -28.16822 -25.44716 -23.92229 -23.39963 -21.94615 -21.11917 -20.36124 -18.43216 -17.33754 -16.92710 -15.78589 -15.75285 -15.27104 -14.83048 -14.55667 -14.38791 -14.10611 -13.55276 -13.27051 -12.97774 -12.63409 -12.55610 -12.19794 -12.05990 -11.81696 -11.32439 -11.15235 -11.04332 -10.74363 -10.39536 -10.29613 -10.13379 -9.89705 -9.72037 -9.50311 -9.22283 -8.78533 -8.76617 -7.40703 -6.53622 -4.62037 0.94559 1.52457 2.19894 2.26466 2.86598 3.06165 3.14997 3.18357 3.28784 3.88593 4.00975 4.18131 4.25924 4.52068 4.82573 4.82969 4.98564 5.14816 5.45587 5.61327 5.67168 6.00861 6.04279 6.12820 6.19801 6.21851 6.36066 6.49904 6.60014 6.73043 6.81404 7.03174 7.12275 7.43657 7.63445 7.98241 8.13437 8.53731 9.06350 10.53462 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.003800 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.900536 B = 7367.086063 C = 7599.335499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.204 3.796 10 H 0.053 0.947 11 C -0.037 4.037 12 Cl -0.240 7.240 13 O -0.305 6.305 14 C 0.166 3.834 15 C -0.147 4.147 16 C -0.092 4.092 17 C 0.073 3.927 18 N -0.306 5.306 19 C 0.248 3.752 20 N -0.547 5.547 21 C 0.193 3.807 22 N -0.316 5.316 23 C -0.066 4.066 24 C -0.174 4.174 25 H 0.273 0.727 26 H 0.135 0.865 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.219 0.781 31 H 0.218 0.782 32 H 0.133 0.867 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -10.992 2.130 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.149 3.851 10 H 0.070 0.930 11 C -0.100 4.100 12 Cl -0.214 7.214 13 O -0.217 6.217 14 C 0.117 3.883 15 C -0.167 4.167 16 C -0.113 4.113 17 C -0.018 4.018 18 N -0.090 5.090 19 C -0.047 4.047 20 N -0.274 5.274 21 C -0.110 4.110 22 N -0.143 5.143 23 C -0.086 4.086 24 C -0.193 4.193 25 H 0.083 0.917 26 H 0.153 0.847 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.151 0.849 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.428 -10.721 2.237 11.045 hybrid contribution 0.186 0.866 -0.138 0.897 sum 1.614 -9.855 2.099 10.204 Atomic orbital electron populations 1.69787 1.06024 1.28278 1.48353 1.24988 0.95204 0.99918 0.93789 0.86151 0.79678 0.81190 0.78589 1.20096 1.20707 1.19340 1.21000 0.94400 0.87748 1.53066 0.90423 1.20619 0.87455 0.82864 0.94148 0.92954 1.25793 0.95453 0.86824 1.01915 1.98651 1.75808 1.47976 1.98969 1.86169 1.46339 1.21361 1.67831 1.19250 0.91893 0.87647 0.89470 1.20163 1.01494 0.90802 1.04208 1.20390 0.94290 0.98716 0.97886 1.17353 0.97263 0.85218 1.02005 1.47651 1.14631 1.10651 1.36023 1.26047 0.99460 0.82125 0.97065 1.70573 1.06846 1.32575 1.17375 1.26050 0.96215 0.89217 0.99477 1.78133 1.02909 1.19683 1.13582 1.20620 0.98989 0.90711 0.98251 1.21496 0.97919 0.99702 1.00154 0.91663 0.84726 0.90552 0.84448 0.85259 0.76465 0.76533 0.84941 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.15 11.29 55.43 0.63 -21.53 16 2 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 3 Si 0.92 19.12 29.54 -169.99 -5.02 14.10 16 4 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.52 -12.95 8.89 -34.44 -0.31 -13.26 16 8 H 0.08 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 4.63 2.19 -27.89 -0.06 4.57 16 10 H 0.05 1.26 5.39 -51.93 -0.28 0.98 16 11 C -0.04 -0.80 6.17 37.16 0.23 -0.57 16 12 Cl -0.24 -4.71 25.60 -51.86 -1.33 -6.04 16 13 O -0.30 -6.46 9.73 -19.52 -0.19 -6.65 16 14 C 0.17 3.05 5.97 -39.21 -0.23 2.82 16 15 C -0.15 -2.22 9.98 -39.46 -0.39 -2.61 16 16 C -0.09 -1.20 9.47 -39.42 -0.37 -1.58 16 17 C 0.07 1.10 6.70 -83.53 -0.56 0.54 16 18 N -0.31 -4.42 3.82 -11.78 -0.05 -4.46 16 19 C 0.25 2.97 11.98 -90.39 -1.08 1.89 16 20 N -0.55 -7.17 11.19 -15.75 -0.18 -7.34 16 21 C 0.19 2.43 13.03 -91.77 -1.20 1.23 16 22 N -0.32 -4.75 12.05 29.30 0.35 -4.40 16 23 C -0.07 -1.09 9.68 -39.42 -0.38 -1.47 16 24 C -0.17 -3.15 7.03 -39.46 -0.28 -3.42 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 26 H 0.13 3.13 5.95 -51.93 -0.31 2.82 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 28 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.13 1.18 6.80 -52.49 -0.36 0.82 16 30 H 0.22 1.62 7.10 -52.49 -0.37 1.25 16 31 H 0.22 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.13 2.17 7.74 -52.49 -0.41 1.76 16 33 H 0.15 2.90 5.10 -52.48 -0.27 2.63 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -27.42 299.38 -8.80 -36.23 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.81 Total: 5.97 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -4.73 Total: -10.39 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.76 Total: -37.73 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.19 Total: -6.65 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 17 Polarization: -4.71 SS G_CDS: -1.33 Total: -6.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.42 -8.80 -36.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233922204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.179 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds