Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48493 * 109.47326 * 269.99871 * 3 2 1 5 5 H 1.48502 * 109.47038 * 30.00065 * 3 2 1 6 6 H 1.48502 * 109.47354 * 149.99525 * 3 2 1 7 7 C 1.37882 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46820 * 299.99838 * 9 7 2 11 11 C 1.52998 * 109.47147 * 59.99402 * 9 7 2 12 12 Cl 1.80307 * 109.47162 * 184.99945 * 11 9 7 13 13 O 1.42895 * 109.47577 * 180.02562 * 9 7 2 14 14 C 1.35929 * 117.00552 * 147.02629 * 13 9 7 15 15 C 1.38747 * 119.98912 * 176.22048 * 14 13 9 16 16 C 1.38070 * 120.00902 * 179.76973 * 15 14 13 17 17 C 1.38831 * 119.98685 * 0.52947 * 16 15 14 18 18 N 1.40310 * 120.01154 * 179.74579 * 17 16 15 19 19 C 1.34687 * 126.83559 * 359.68946 * 18 17 16 20 20 N 1.30869 * 108.03780 * 179.86783 * 19 18 17 21 21 C 1.33246 * 109.83782 * 0.40504 * 20 19 18 22 22 N 1.30764 * 108.99793 * 359.74911 * 21 20 19 23 23 C 1.38837 * 119.98456 * 359.72455 * 17 16 15 24 24 C 1.38064 * 119.98265 * 0.02562 * 23 17 16 25 25 H 0.97002 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47776 * 305.00241 * 11 9 7 27 27 H 1.09000 * 109.47236 * 65.00613 * 11 9 7 28 28 H 1.07997 * 120.00067 * 0.02562 * 15 14 13 29 29 H 1.07994 * 120.00835 * 180.25185 * 16 15 14 30 30 H 1.08002 * 125.98720 * 359.97438 * 19 18 17 31 31 H 1.08002 * 125.50377 * 179.72031 * 21 20 19 32 32 H 1.07993 * 120.01337 * 180.02562 * 23 17 16 33 33 H 1.08003 * 119.99169 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2489 12 17 -0.6388 -4.0720 -1.1768 13 8 2.1795 -3.5854 0.0017 14 6 1.8078 -4.7144 0.6611 15 6 2.6270 -5.8339 0.6357 16 6 2.2521 -6.9794 1.3093 17 6 1.0499 -7.0145 2.0028 18 7 0.6659 -8.1800 2.6830 19 6 1.3497 -9.3385 2.7496 20 7 0.6580 -10.1759 3.4796 21 6 -0.4701 -9.5956 3.8871 22 7 -0.5109 -8.3730 3.4249 23 6 0.2280 -5.8958 2.0236 24 6 0.6062 -4.7491 1.3540 25 1 -0.4850 0.8401 0.0004 26 1 -0.2756 -1.7049 -1.2953 27 1 1.0037 -2.6125 -2.1365 28 1 3.5601 -5.8081 0.0925 29 1 2.8917 -7.8494 1.2929 30 1 2.3029 -9.5405 2.2837 31 1 -1.2286 -10.0600 4.4998 32 1 -0.7071 -5.9224 2.5633 33 1 -0.0329 -3.8786 1.3704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233922204.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = 61.395625 kcal Electronic energy + Delta-G solvation = -20361.793804 eV Core-core repulsion = 17029.491311 eV Total energy + Delta-G solvation = -3332.302493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.25370 -41.06397 -38.78157 -36.63688 -35.48585 -34.48353 -32.66332 -32.04663 -31.26537 -29.43019 -27.28863 -25.15148 -24.57280 -23.29493 -22.23011 -21.68058 -19.64408 -18.74648 -18.67568 -17.05643 -16.82906 -16.70836 -16.27728 -16.00207 -15.65618 -15.16514 -15.01554 -14.62736 -14.35316 -14.03065 -13.81434 -13.76609 -13.51187 -13.09101 -12.95368 -12.84808 -12.58852 -12.30495 -11.88231 -11.71599 -11.38657 -11.15665 -11.13795 -10.92421 -10.76896 -10.56697 -10.02582 -8.72975 -8.38290 -6.54184 -0.16022 0.29894 1.07630 1.24147 1.40212 1.44250 1.54599 1.59524 1.92118 2.25818 2.65084 2.77855 2.97325 3.40460 3.47390 3.81002 3.97059 3.98697 4.18090 4.28741 4.38515 4.48846 4.55509 4.78091 4.90977 5.04594 5.09612 5.20626 5.35854 5.40421 5.43160 5.55908 5.62702 5.83046 6.03892 6.45541 6.77148 7.00597 7.18526 8.68071 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028222 B = 0.003800 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.900536 B = 7367.086063 C = 7599.335499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.210 3.790 10 H 0.032 0.968 11 C -0.028 4.028 12 Cl -0.223 7.223 13 O -0.320 6.320 14 C 0.131 3.869 15 C -0.138 4.138 16 C -0.074 4.074 17 C 0.082 3.918 18 N -0.325 5.325 19 C 0.261 3.739 20 N -0.564 5.564 21 C 0.200 3.800 22 N -0.358 5.358 23 C -0.080 4.080 24 C -0.183 4.183 25 H 0.275 0.725 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.182 0.818 30 H 0.265 0.735 31 H 0.250 0.750 32 H 0.124 0.876 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -13.017 2.173 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.088 0.912 9 C 0.155 3.845 10 H 0.050 0.950 11 C -0.090 4.090 12 Cl -0.197 7.197 13 O -0.233 6.233 14 C 0.083 3.917 15 C -0.157 4.157 16 C -0.095 4.095 17 C -0.010 4.010 18 N -0.109 5.109 19 C -0.033 4.033 20 N -0.291 5.291 21 C -0.102 4.102 22 N -0.185 5.185 23 C -0.100 4.100 24 C -0.202 4.202 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.097 0.903 28 H 0.179 0.821 29 H 0.200 0.800 30 H 0.280 0.720 31 H 0.266 0.734 32 H 0.142 0.858 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.978 -12.774 2.288 13.315 hybrid contribution -0.338 1.238 -0.050 1.285 sum 2.640 -11.536 2.238 12.044 Atomic orbital electron populations 1.69885 1.07118 1.29008 1.48682 1.25720 0.95901 1.02668 0.93187 0.85244 0.78426 0.77479 0.78775 1.19347 1.20428 1.19210 1.21252 0.94295 0.89195 1.53751 0.91174 1.20303 0.87404 0.83145 0.93635 0.95009 1.25448 0.95165 0.86899 1.01529 1.98644 1.75298 1.46798 1.98987 1.86096 1.46096 1.21982 1.69143 1.19593 0.93142 0.87954 0.90969 1.20524 1.01564 0.89936 1.03706 1.20859 0.93651 0.99500 0.95447 1.17498 0.97354 0.84909 1.01261 1.47670 1.15202 1.11072 1.36937 1.27042 1.00139 0.80660 0.95469 1.70653 1.07266 1.33006 1.18132 1.26766 0.96540 0.88462 0.98454 1.78121 1.04153 1.21180 1.15048 1.20555 0.99425 0.91257 0.98748 1.21246 0.98046 0.99478 1.01476 0.91506 0.86581 0.90272 0.82083 0.80039 0.71963 0.73427 0.85777 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.62 11.29 21.45 0.24 -46.38 16 2 C 0.03 1.32 5.29 84.66 0.45 1.77 16 3 Si 0.98 39.44 29.54 68.60 2.03 41.46 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -27.84 8.89 25.60 0.23 -27.61 16 8 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 9.96 2.19 29.85 0.07 10.02 16 10 H 0.03 1.64 5.39 -2.38 -0.01 1.63 16 11 C -0.03 -1.22 6.17 71.98 0.44 -0.78 16 12 Cl -0.22 -8.95 25.60 -2.72 -0.07 -9.02 16 13 O -0.32 -13.87 9.73 -92.75 -0.90 -14.77 16 14 C 0.13 4.82 5.97 22.51 0.13 4.95 16 15 C -0.14 -3.83 9.98 22.35 0.22 -3.61 16 16 C -0.07 -1.66 9.47 22.37 0.21 -1.45 16 17 C 0.08 2.30 6.70 38.07 0.25 2.55 16 18 N -0.33 -8.58 3.82 -191.19 -0.73 -9.31 16 19 C 0.26 5.20 11.98 180.27 2.16 7.36 16 20 N -0.56 -12.99 11.19 -203.74 -2.28 -15.27 16 21 C 0.20 4.58 13.03 180.75 2.35 6.94 16 22 N -0.36 -10.30 12.05 -61.21 -0.74 -11.03 16 23 C -0.08 -2.68 9.68 22.37 0.22 -2.46 16 24 C -0.18 -6.88 7.03 22.35 0.16 -6.72 16 25 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 26 H 0.12 5.62 5.95 -2.39 -0.01 5.60 16 27 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.18 2.12 6.80 -2.91 -0.02 2.10 16 30 H 0.26 2.29 7.10 -2.91 -0.02 2.27 16 31 H 0.25 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.12 4.27 7.74 -2.91 -0.02 4.24 16 33 H 0.12 5.17 5.10 -2.91 -0.01 5.15 16 Total: -1.00 -61.36 299.38 5.60 -55.76 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.16 Total: 17.61 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 6.90 Total: -9.05 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -3.51 Total: -81.99 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.90 Total: -14.77 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 17 Polarization: -8.95 SS G_CDS: -0.07 Total: -9.02 kcal Total: -61.36 5.60 -55.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233922204.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.151 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds