Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46685 * 270.00041 * 3 2 1 5 5 H 1.48493 * 109.47540 * 29.99489 * 3 2 1 6 6 H 1.48497 * 109.46997 * 150.00340 * 3 2 1 7 7 C 1.37872 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99553 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00461 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47106 * 300.00196 * 9 7 2 11 11 C 1.53003 * 109.46717 * 60.00009 * 9 7 2 12 12 Cl 1.80303 * 109.46820 * 185.00191 * 11 9 7 13 13 O 1.42891 * 109.47175 * 179.97438 * 9 7 2 14 14 C 1.35817 * 116.99838 * 141.63199 * 13 9 7 15 15 C 1.38616 * 120.12210 * 5.64118 * 14 13 9 16 16 C 1.38149 * 120.06182 * 179.97438 * 15 14 13 17 17 C 1.38408 * 120.30567 * 359.97438 * 16 15 14 18 18 C 1.37977 * 120.24963 * 0.02562 * 17 16 15 19 19 C 1.39326 * 119.92884 * 359.74497 * 18 17 16 20 20 C 1.48319 * 120.15194 * 180.27991 * 19 18 17 21 21 C 1.42327 * 126.94184 * 0.22416 * 20 19 18 22 22 C 1.35212 * 103.93716 * 179.97438 * 21 20 19 23 23 O 1.34080 * 106.68941 * 0.02562 * 22 21 20 24 24 N 1.20901 * 111.84487 * 359.74365 * 23 22 21 25 25 H 0.97003 * 119.99643 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47027 * 305.00024 * 11 9 7 27 27 H 1.09002 * 109.47259 * 65.00414 * 11 9 7 28 28 H 1.08002 * 119.96905 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.84353 * 180.02562 * 16 15 14 30 30 H 1.08005 * 119.87387 * 180.02562 * 17 16 15 31 31 H 1.07996 * 120.03618 * 180.02562 * 18 17 16 32 32 H 1.08001 * 128.03587 * 359.97191 * 21 20 19 33 33 H 1.07995 * 126.65556 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8920 11 6 0.3709 -2.5810 -1.2472 12 17 -0.6395 -4.0724 -1.1736 13 8 2.1796 -3.5852 0.0015 14 6 1.8597 -4.6701 0.7534 15 6 0.6268 -4.7411 1.3829 16 6 0.3025 -5.8454 2.1469 17 6 1.2040 -6.8861 2.2883 18 6 2.4348 -6.8287 1.6673 19 6 2.7705 -5.7219 0.8904 20 6 4.0897 -5.6579 0.2156 21 6 5.1196 -6.6394 0.2557 22 6 6.1014 -6.1128 -0.5104 23 8 5.6551 -4.9259 -0.9460 24 7 4.5408 -4.6883 -0.5417 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2765 -1.7053 -1.2934 27 1 1.0023 -2.6133 -2.1352 28 1 -0.0810 -3.9323 1.2759 29 1 -0.6593 -5.8973 2.6356 30 1 0.9430 -7.7463 2.8870 31 1 3.1354 -7.6428 1.7796 32 1 5.1175 -7.5852 0.7771 33 1 7.0595 -6.5609 -0.7284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234636134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 41.267201 kcal Electronic energy + Delta-G solvation = -21070.916682 eV Core-core repulsion = 17705.448604 eV Total energy + Delta-G solvation = -3365.468078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.48956 -39.49427 -36.94303 -34.84116 -34.04305 -33.40329 -31.44845 -30.16528 -29.90132 -28.59352 -25.30958 -23.82969 -23.06957 -22.16904 -20.56211 -20.28674 -18.04257 -17.14477 -17.01255 -16.80674 -15.58118 -15.09462 -14.79431 -14.46371 -14.31963 -13.83011 -13.33682 -13.08814 -12.86097 -12.67082 -12.32467 -11.98671 -11.66570 -11.33996 -11.12065 -11.02672 -10.86001 -10.69734 -10.60605 -10.38261 -10.20526 -9.64037 -9.43366 -9.40144 -9.13678 -8.65771 -8.20532 -7.34037 -6.40846 -4.47260 1.34049 1.88513 1.96454 2.93364 3.14973 3.22767 3.27416 3.40571 3.58089 4.04928 4.33394 4.38838 4.46807 4.75541 4.95737 5.29695 5.36935 5.43424 5.47829 5.63688 5.76105 5.96816 6.05175 6.16103 6.25305 6.30453 6.38059 6.66898 6.78422 6.91969 6.93832 7.13435 7.27522 7.59531 7.79278 8.33775 8.71356 8.73795 9.20177 10.66301 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.006621 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.696174 B = 4228.147440 C = 5460.740406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.202 3.798 10 H 0.051 0.949 11 C -0.032 4.032 12 Cl -0.243 7.243 13 O -0.285 6.285 14 C 0.185 3.815 15 C -0.198 4.198 16 C -0.072 4.072 17 C -0.179 4.179 18 C -0.064 4.064 19 C -0.085 4.085 20 C 0.066 3.934 21 C -0.230 4.230 22 C -0.077 4.077 23 O 0.102 5.898 24 N -0.322 5.322 25 H 0.271 0.729 26 H 0.134 0.866 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.167 0.833 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 -12.039 1.858 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.095 0.905 9 C 0.148 3.852 10 H 0.068 0.932 11 C -0.095 4.095 12 Cl -0.217 7.217 13 O -0.196 6.196 14 C 0.135 3.865 15 C -0.216 4.216 16 C -0.091 4.091 17 C -0.197 4.197 18 C -0.083 4.083 19 C -0.087 4.087 20 C -0.091 4.091 21 C -0.251 4.251 22 C -0.158 4.158 23 O 0.031 5.969 24 N -0.022 5.022 25 H 0.081 0.919 26 H 0.152 0.848 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.184 0.816 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.019 -10.747 1.298 11.932 hybrid contribution 0.219 -0.048 0.383 0.444 sum 5.238 -10.794 1.682 12.115 Atomic orbital electron populations 1.69796 1.05971 1.27997 1.49138 1.24974 0.95173 0.99794 0.94029 0.86186 0.79713 0.81351 0.78561 1.20125 1.20800 1.19400 1.21074 0.94474 0.87849 1.52051 0.90457 1.20597 0.87431 0.83206 0.94012 0.93177 1.25756 0.95284 0.86430 1.02014 1.98637 1.75838 1.48308 1.98940 1.86290 1.48366 1.23693 1.61217 1.19167 0.91408 0.87406 0.88546 1.21567 0.97250 1.01192 1.01625 1.20979 0.98748 0.92952 0.96424 1.20736 0.94685 0.99954 1.04348 1.20694 0.96570 0.95688 0.95387 1.16995 0.90795 0.96166 1.04726 1.21895 0.96328 0.91488 0.99358 1.22675 0.93909 1.02676 1.05877 1.25832 1.01695 0.88253 1.00032 1.84923 1.23994 1.32292 1.55678 1.74532 0.93754 1.21314 1.12593 0.91874 0.84808 0.90698 0.83905 0.86301 0.86329 0.86009 0.81556 0.77306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 11.29 55.43 0.63 -22.89 16 2 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 3 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.52 -13.92 8.89 -34.44 -0.31 -14.23 16 8 H 0.08 2.15 7.81 -52.48 -0.41 1.74 16 9 C 0.20 5.07 2.15 -27.88 -0.06 5.01 16 10 H 0.05 1.31 5.49 -51.93 -0.28 1.03 16 11 C -0.03 -0.76 6.17 37.16 0.23 -0.53 16 12 Cl -0.24 -5.14 25.68 -51.86 -1.33 -6.47 16 13 O -0.28 -6.93 8.07 -19.16 -0.15 -7.08 16 14 C 0.18 3.97 6.22 -38.86 -0.24 3.73 16 15 C -0.20 -3.91 7.20 -39.47 -0.28 -4.19 16 16 C -0.07 -1.17 10.03 -39.55 -0.40 -1.57 16 17 C -0.18 -2.59 10.03 -39.61 -0.40 -2.98 16 18 C -0.06 -0.97 9.60 -39.27 -0.38 -1.35 16 19 C -0.08 -1.61 5.89 -104.76 -0.62 -2.23 16 20 C 0.07 1.21 7.03 -82.49 -0.58 0.63 16 21 C -0.23 -3.04 10.52 -39.09 -0.41 -3.45 16 22 C -0.08 -0.90 12.27 29.66 0.36 -0.54 16 23 O 0.10 1.68 11.18 17.08 0.19 1.87 16 24 N -0.32 -6.51 10.67 33.31 0.36 -6.16 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.13 3.34 5.95 -51.93 -0.31 3.03 16 27 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.14 3.01 4.83 -52.49 -0.25 2.76 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.12 1.43 7.23 -52.49 -0.38 1.05 16 32 H 0.17 1.60 7.58 -52.49 -0.40 1.20 16 33 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 298.54 15.07 4.50 4.50 Total: -1.00 -29.63 298.54 -6.87 -36.50 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.86 Total: 4.41 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.17 Total: -20.15 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.98 Total: -29.05 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.04 Total: -5.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -5.14 SS G_CDS: -1.33 Total: -6.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.63 -6.87 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234636134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.763 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds