Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46685 * 270.00041 * 3 2 1 5 5 H 1.48493 * 109.47540 * 29.99489 * 3 2 1 6 6 H 1.48497 * 109.46997 * 150.00340 * 3 2 1 7 7 C 1.37872 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99553 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00461 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47106 * 300.00196 * 9 7 2 11 11 C 1.53003 * 109.46717 * 60.00009 * 9 7 2 12 12 Cl 1.80303 * 109.46820 * 185.00191 * 11 9 7 13 13 O 1.42891 * 109.47175 * 179.97438 * 9 7 2 14 14 C 1.35817 * 116.99838 * 141.63199 * 13 9 7 15 15 C 1.38616 * 120.12210 * 5.64118 * 14 13 9 16 16 C 1.38149 * 120.06182 * 179.97438 * 15 14 13 17 17 C 1.38408 * 120.30567 * 359.97438 * 16 15 14 18 18 C 1.37977 * 120.24963 * 0.02562 * 17 16 15 19 19 C 1.39326 * 119.92884 * 359.74497 * 18 17 16 20 20 C 1.48319 * 120.15194 * 180.27991 * 19 18 17 21 21 C 1.42327 * 126.94184 * 0.22416 * 20 19 18 22 22 C 1.35212 * 103.93716 * 179.97438 * 21 20 19 23 23 O 1.34080 * 106.68941 * 0.02562 * 22 21 20 24 24 N 1.20901 * 111.84487 * 359.74365 * 23 22 21 25 25 H 0.97003 * 119.99643 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47027 * 305.00024 * 11 9 7 27 27 H 1.09002 * 109.47259 * 65.00414 * 11 9 7 28 28 H 1.08002 * 119.96905 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.84353 * 180.02562 * 16 15 14 30 30 H 1.08005 * 119.87387 * 180.02562 * 17 16 15 31 31 H 1.07996 * 120.03618 * 180.02562 * 18 17 16 32 32 H 1.08001 * 128.03587 * 359.97191 * 21 20 19 33 33 H 1.07995 * 126.65556 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8920 11 6 0.3709 -2.5810 -1.2472 12 17 -0.6395 -4.0724 -1.1736 13 8 2.1796 -3.5852 0.0015 14 6 1.8597 -4.6701 0.7534 15 6 0.6268 -4.7411 1.3829 16 6 0.3025 -5.8454 2.1469 17 6 1.2040 -6.8861 2.2883 18 6 2.4348 -6.8287 1.6673 19 6 2.7705 -5.7219 0.8904 20 6 4.0897 -5.6579 0.2156 21 6 5.1196 -6.6394 0.2557 22 6 6.1014 -6.1128 -0.5104 23 8 5.6551 -4.9259 -0.9460 24 7 4.5408 -4.6883 -0.5417 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2765 -1.7053 -1.2934 27 1 1.0023 -2.6133 -2.1352 28 1 -0.0810 -3.9323 1.2759 29 1 -0.6593 -5.8973 2.6356 30 1 0.9430 -7.7463 2.8870 31 1 3.1354 -7.6428 1.7796 32 1 5.1175 -7.5852 0.7771 33 1 7.0595 -6.5609 -0.7284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234636134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = 24.295426 kcal Electronic energy + Delta-G solvation = -21071.652633 eV Core-core repulsion = 17705.448604 eV Total energy + Delta-G solvation = -3366.204029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.71011 -40.98476 -38.47599 -36.63498 -35.42008 -35.18844 -32.60508 -31.68131 -31.41889 -30.13206 -27.32983 -25.11767 -24.50596 -23.52500 -21.98272 -21.69663 -19.36150 -18.71361 -18.41136 -18.39474 -17.15545 -16.54927 -16.29919 -16.11979 -15.75642 -15.35117 -14.84327 -14.44035 -14.28111 -14.00544 -13.83290 -13.67481 -13.32614 -13.07966 -12.81199 -12.55978 -12.38196 -12.28230 -12.11683 -11.85122 -11.62446 -11.45603 -11.20673 -10.96174 -10.61365 -10.49394 -9.52965 -8.81628 -8.40707 -6.56266 0.04154 0.61601 0.91257 1.34160 1.37439 1.48388 1.54243 1.70191 2.24675 2.64819 2.71923 2.93100 3.00761 3.32235 3.62480 4.12820 4.16256 4.23395 4.31922 4.38393 4.41906 4.49211 4.63829 4.72591 4.85993 4.92296 5.05545 5.16330 5.25614 5.49150 5.52078 5.57131 5.62221 5.83461 5.98636 6.44920 6.84093 7.16584 7.62224 8.65558 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.006621 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.696174 B = 4228.147440 C = 5460.740406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.211 3.789 10 H 0.031 0.969 11 C -0.021 4.021 12 Cl -0.220 7.220 13 O -0.307 6.307 14 C 0.137 3.863 15 C -0.218 4.218 16 C -0.075 4.075 17 C -0.161 4.161 18 C -0.055 4.055 19 C -0.101 4.101 20 C 0.033 3.967 21 C -0.227 4.227 22 C -0.057 4.057 23 O 0.088 5.912 24 N -0.384 5.384 25 H 0.277 0.723 26 H 0.119 0.881 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.208 0.792 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 -14.689 2.884 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.156 3.844 10 H 0.049 0.951 11 C -0.084 4.084 12 Cl -0.194 7.194 13 O -0.220 6.220 14 C 0.089 3.911 15 C -0.237 4.237 16 C -0.094 4.094 17 C -0.179 4.179 18 C -0.074 4.074 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.248 4.248 22 C -0.137 4.137 23 O 0.019 5.981 24 N -0.086 5.086 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.225 0.775 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.153 -13.422 2.330 14.947 hybrid contribution -0.099 0.555 0.125 0.577 sum 6.054 -12.867 2.455 14.430 Atomic orbital electron populations 1.69870 1.06899 1.28993 1.48810 1.25698 0.95997 1.02475 0.93135 0.85285 0.78334 0.77628 0.78890 1.19254 1.19470 1.19846 1.21219 0.93735 0.89742 1.53689 0.92570 1.20262 0.87328 0.83376 0.93466 0.95147 1.25352 0.94997 0.86888 1.01137 1.98622 1.75020 1.46819 1.98948 1.86232 1.48344 1.24477 1.62921 1.19625 0.93265 0.87789 0.90429 1.21477 0.96577 1.02119 1.03486 1.21350 1.00392 0.92180 0.95461 1.21286 0.93480 1.00180 1.02905 1.21230 0.97605 0.95220 0.93394 1.17512 0.90955 0.96495 1.05326 1.22351 0.97296 0.92888 0.99699 1.23126 0.92216 1.03183 1.06303 1.26918 1.03074 0.85988 0.97715 1.84840 1.23044 1.34436 1.55824 1.74555 0.95572 1.23646 1.14817 0.91373 0.86281 0.91534 0.86444 0.83727 0.81664 0.81654 0.77535 0.71685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.48 11.29 21.45 0.24 -49.23 16 2 C 0.03 1.51 5.29 84.65 0.45 1.96 16 3 Si 0.98 43.03 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.55 -31.31 8.89 25.60 0.23 -31.08 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.21 11.33 2.15 29.85 0.06 11.39 16 10 H 0.03 1.74 5.49 -2.39 -0.01 1.72 16 11 C -0.02 -1.04 6.17 71.98 0.44 -0.60 16 12 Cl -0.22 -9.65 25.68 -2.72 -0.07 -9.72 16 13 O -0.31 -16.02 8.07 -91.49 -0.74 -16.76 16 14 C 0.14 6.15 6.22 22.74 0.14 6.29 16 15 C -0.22 -8.88 7.20 22.34 0.16 -8.72 16 16 C -0.08 -2.33 10.03 22.29 0.22 -2.10 16 17 C -0.16 -4.02 10.03 22.25 0.22 -3.80 16 18 C -0.06 -1.50 9.60 22.47 0.22 -1.29 16 19 C -0.10 -3.81 5.89 -19.95 -0.12 -3.93 16 20 C 0.03 1.21 7.03 42.96 0.30 1.51 16 21 C -0.23 -5.29 10.52 22.59 0.24 -5.06 16 22 C -0.06 -1.16 12.27 67.12 0.82 -0.34 16 23 O 0.09 2.90 11.18 71.28 0.80 3.70 16 24 N -0.38 -16.09 10.67 -49.44 -0.53 -16.62 16 25 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 26 H 0.12 6.28 5.95 -2.39 -0.01 6.26 16 27 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.12 5.29 4.83 -2.91 -0.01 5.28 16 29 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.17 2.96 7.23 -2.91 -0.02 2.94 16 32 H 0.21 2.86 7.58 -2.91 -0.02 2.83 16 33 H 0.27 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -71.25 298.54 6.28 -64.97 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.15 Total: 14.38 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 3.39 Total: -35.76 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.29 Total: -65.85 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.06 Total: -13.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: -9.65 SS G_CDS: -0.07 Total: -9.72 kcal Total: -71.25 6.28 -64.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234636134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.264 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds