Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86791 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47333 * 274.73124 * 3 2 1 5 5 H 1.48498 * 109.47516 * 34.73719 * 3 2 1 6 6 H 1.48505 * 109.47158 * 154.73708 * 3 2 1 7 7 C 1.39898 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00380 * 163.51080 * 7 2 1 9 9 C 1.41380 * 119.99932 * 343.51222 * 7 2 1 10 10 C 1.40805 * 120.57106 * 155.72467 * 9 7 2 11 11 N 1.31505 * 120.69461 * 180.02562 * 10 9 7 12 12 C 1.32166 * 122.07890 * 0.02562 * 11 10 9 13 13 F 1.35094 * 119.45965 * 179.97438 * 12 11 10 14 14 C 1.40062 * 121.08069 * 359.97438 * 12 11 10 15 15 C 1.48382 * 120.41736 * 179.97438 * 14 12 11 16 16 C 1.39288 * 120.08956 * 310.02331 * 15 14 12 17 17 C 1.38505 * 119.84255 * 180.02562 * 16 15 14 18 18 O 1.35907 * 119.98275 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.02802 * 0.02562 * 17 16 15 20 20 C 1.38323 * 120.17627 * 0.02562 * 19 17 16 21 21 Cl 1.73605 * 119.92133 * 179.97438 * 20 19 17 22 22 C 1.38190 * 120.15082 * 359.67273 * 20 19 17 23 23 C 1.39015 * 119.16178 * 0.02562 * 14 12 11 24 24 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.65258 * 359.74075 * 10 9 7 26 26 H 1.07999 * 120.07375 * 0.02562 * 16 15 14 27 27 H 0.96709 * 113.99659 * 90.00888 * 18 17 16 28 28 H 1.08001 * 119.91264 * 180.02562 * 19 17 16 29 29 H 1.08001 * 120.00993 * 180.29653 * 22 20 19 30 30 H 1.07991 * 120.93492 * 180.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3902 2.1041 -1.3952 5 1 1.4939 2.6217 0.7977 6 1 3.5867 1.4132 0.5975 7 6 2.0081 -1.2116 0.0005 8 1 3.0548 -1.2310 -0.2649 9 6 1.3448 -2.4106 0.3486 10 6 1.8236 -3.6529 -0.1096 11 7 1.2082 -4.7697 0.2122 12 6 0.1255 -4.7812 0.9701 13 9 -0.4648 -5.9593 1.2676 14 6 -0.4200 -3.5918 1.4697 15 6 -1.6366 -3.6218 2.3188 16 6 -2.7598 -4.3337 1.9047 17 6 -3.8928 -4.3578 2.7010 18 8 -4.9906 -5.0512 2.2994 19 6 -3.9079 -3.6733 3.9084 20 6 -2.7933 -2.9651 4.3201 21 17 -2.8196 -2.1108 5.8312 22 6 -1.6568 -2.9412 3.5344 23 6 0.1920 -2.3829 1.1593 24 1 -0.4849 0.8401 -0.0004 25 1 2.7029 -3.6887 -0.7356 26 1 -2.7473 -4.8657 0.9648 27 1 -5.0039 -5.9720 2.5946 28 1 -4.7922 -3.6937 4.5281 29 1 -0.7862 -2.3915 3.8603 30 1 -0.2040 -1.4489 1.5295 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235904774.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -66.062545 kcal Electronic energy + Delta-G solvation = -20083.550330 eV Core-core repulsion = 16589.967780 eV Total energy + Delta-G solvation = -3493.582550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.46123 -41.00598 -40.00697 -38.13667 -37.24660 -36.03161 -33.86102 -32.26473 -31.02737 -30.05386 -27.41599 -24.97573 -24.10764 -23.25751 -22.38753 -19.74069 -18.88551 -18.51211 -17.86320 -17.58736 -17.01934 -16.86090 -16.60028 -16.27240 -15.43874 -15.38720 -14.95463 -14.33059 -14.27702 -14.01823 -13.85277 -13.69532 -13.48658 -13.13763 -13.00210 -12.82449 -12.46994 -12.31532 -12.10803 -11.92810 -11.66104 -11.24958 -10.62381 -10.35304 -9.85409 -9.73779 -9.31871 -8.80731 -6.52595 -0.21061 0.01620 0.58251 0.80362 0.98054 1.42121 1.48320 1.57998 2.16326 2.36797 2.58154 3.12815 3.21280 3.44766 3.55282 3.95983 3.96869 4.12467 4.23375 4.46063 4.58867 4.61465 4.84533 4.99074 5.04276 5.10674 5.16331 5.33917 5.49485 5.56855 5.70919 5.87814 6.32675 6.57751 6.62273 6.75691 7.28953 8.13413 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.005664 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.450766 B = 4942.069216 C = 6264.630885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.035 3.965 10 C 0.000 4.000 11 N -0.501 5.501 12 C 0.140 3.860 13 F -0.142 7.142 14 C -0.097 4.097 15 C -0.008 4.008 16 C -0.135 4.135 17 C 0.130 3.870 18 O -0.496 6.496 19 C -0.135 4.135 20 C -0.016 4.016 21 Cl -0.054 7.054 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.297 0.703 25 H 0.158 0.842 26 H 0.124 0.876 27 H 0.415 0.585 28 H 0.165 0.835 29 H 0.132 0.868 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -0.719 7.713 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.118 0.882 9 C 0.030 3.970 10 C -0.162 4.162 11 N -0.213 5.213 12 C -0.013 4.013 13 F -0.122 7.122 14 C -0.101 4.101 15 C -0.009 4.009 16 C -0.154 4.154 17 C 0.085 3.915 18 O -0.310 6.310 19 C -0.154 4.154 20 C -0.043 4.043 21 Cl -0.025 7.025 22 C -0.133 4.133 23 C -0.137 4.137 24 H 0.108 0.892 25 H 0.175 0.825 26 H 0.142 0.858 27 H 0.275 0.725 28 H 0.183 0.817 29 H 0.150 0.850 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.398 -0.830 7.298 9.741 hybrid contribution 0.088 0.642 0.300 0.714 sum -6.310 -0.187 7.598 9.878 Atomic orbital electron populations 1.69814 1.09246 1.31710 1.32399 1.26904 0.95495 1.04984 0.90790 0.85063 0.79325 0.75189 0.79581 1.18607 1.19202 1.17556 1.19944 0.98623 0.90911 1.38841 0.88218 1.18818 0.92721 0.94678 0.90798 1.22616 1.02704 0.86270 1.04602 1.66273 1.08016 1.34193 1.12838 1.17661 0.96180 0.80162 1.07334 1.91384 1.82347 1.46249 1.92177 1.19218 0.96741 0.92954 1.01200 1.18445 0.92540 0.96562 0.93399 1.21607 0.92114 1.00570 1.01105 1.17975 0.85839 0.96052 0.91629 1.84776 1.38807 1.29537 1.77881 1.21436 0.98541 0.98969 0.96454 1.20542 0.95210 0.98913 0.89585 1.98361 1.98646 1.75759 1.29762 1.21119 0.98353 1.00316 0.93496 1.21729 0.97652 0.95530 0.98767 0.89212 0.82468 0.85782 0.72484 0.81700 0.84967 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.66 10.90 21.82 0.24 -37.42 16 2 C 0.04 1.60 5.19 85.24 0.44 2.05 16 3 Si 0.99 33.26 29.59 68.60 2.03 35.29 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 6 H -0.25 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.46 -21.34 9.08 23.45 0.21 -21.13 16 8 H 0.10 4.33 7.90 -2.91 -0.02 4.31 16 9 C 0.03 1.71 5.59 -21.21 -0.12 1.59 16 10 C 0.00 -0.01 10.96 85.37 0.94 0.93 16 11 N -0.50 -24.92 10.33 -193.73 -2.00 -26.92 16 12 C 0.14 6.76 8.30 85.09 0.71 7.47 16 13 F -0.14 -6.44 15.90 44.97 0.72 -5.72 16 14 C -0.10 -4.50 5.48 -19.95 -0.11 -4.61 16 15 C -0.01 -0.33 5.32 -20.06 -0.11 -0.43 16 16 C -0.14 -4.77 8.81 22.59 0.20 -4.57 16 17 C 0.13 3.70 6.70 22.47 0.15 3.86 16 18 O -0.50 -11.48 13.50 -92.50 -1.25 -12.73 16 19 C -0.14 -3.51 9.76 22.43 0.22 -3.29 16 20 C -0.02 -0.46 6.31 22.28 0.14 -0.32 16 21 Cl -0.05 -1.36 28.95 -2.72 -0.08 -1.44 16 22 C -0.11 -3.97 9.31 22.52 0.21 -3.76 16 23 C -0.11 -5.44 8.28 23.12 0.19 -5.25 16 24 H 0.30 12.47 8.30 -92.71 -0.77 11.71 16 25 H 0.16 6.69 8.06 -2.91 -0.02 6.67 16 26 H 0.12 4.54 7.79 -2.91 -0.02 4.52 16 27 H 0.42 5.15 9.06 -74.05 -0.67 4.47 16 28 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.13 4.61 8.05 -2.91 -0.02 4.59 16 30 H 0.13 6.60 6.20 -2.92 -0.02 6.58 16 Total: -1.00 -57.00 292.99 3.27 -53.72 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.55 Total: 22.69 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.07 Total: -27.47 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.76 Total: -64.34 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.25 Total: -12.73 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.72 Total: -5.72 kcal Atomic # 14 Polarization: 33.26 SS G_CDS: 2.03 Total: 35.29 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -57.00 3.27 -53.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235904774.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.339 kcal (2) G-P(sol) polarization free energy of solvation -56.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds