Wall clock time and date at job start Tue Mar 31 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46617 * 90.00162 * 3 2 1 5 5 H 1.48499 * 109.47111 * 210.00271 * 3 2 1 6 6 H 1.48499 * 109.47016 * 330.00185 * 3 2 1 7 7 C 1.38637 * 119.99845 * 179.72772 * 2 1 3 8 8 H 1.07994 * 120.00110 * 0.02562 * 7 2 1 9 9 O 1.34812 * 119.99582 * 179.97438 * 7 2 1 10 10 C 1.35731 * 116.99803 * 185.34584 * 9 7 2 11 11 C 1.39468 * 120.37519 * 5.78636 * 10 9 7 12 12 C 1.38175 * 118.46259 * 179.97438 * 11 10 9 13 13 C 1.39510 * 119.14284 * 0.02562 * 12 11 10 14 14 C 1.48143 * 119.65751 * 180.02562 * 13 12 11 15 15 C 1.39675 * 120.09825 * 311.63953 * 14 13 12 16 16 F 1.35104 * 120.05175 * 359.97438 * 15 14 13 17 17 C 1.38118 * 119.89694 * 179.72174 * 15 14 13 18 18 C 1.38827 * 120.09763 * 0.53248 * 17 15 14 19 19 O 1.35842 * 119.90033 * 179.74251 * 18 17 15 20 20 C 1.38834 * 120.20557 * 359.76418 * 18 17 15 21 21 C 1.38113 * 120.09637 * 359.95999 * 20 18 17 22 22 F 1.35096 * 120.04568 * 180.02562 * 21 20 18 23 23 N 1.32723 * 120.68386 * 359.97438 * 13 12 11 24 24 C 1.31717 * 121.66850 * 359.72819 * 23 13 12 25 25 H 0.97003 * 119.99618 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.76489 * 359.95181 * 11 10 9 27 27 H 1.08004 * 120.42409 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.95128 * 180.24904 * 17 15 14 29 29 H 0.96703 * 114.00200 * 270.02489 * 19 18 17 30 30 H 1.07996 * 119.95058 * 179.97438 * 20 18 17 31 31 H 1.08002 * 119.60302 * 180.26298 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0463 1.4002 5 1 3.5473 1.4402 -0.7001 6 1 1.4472 2.6527 -0.7000 7 6 2.0089 -1.2006 0.0057 8 1 1.4689 -2.1359 0.0097 9 8 3.3570 -1.2006 0.0052 10 6 3.9732 -2.4052 -0.1017 11 6 3.2267 -3.5618 -0.3257 12 6 3.8945 -4.7671 -0.4285 13 6 5.2840 -4.7865 -0.3052 14 6 6.0117 -6.0723 -0.4142 15 6 5.5792 -7.1855 0.3103 16 9 4.4963 -7.0915 1.1126 17 6 6.2573 -8.3838 0.2012 18 6 7.3736 -8.4798 -0.6185 19 8 8.0406 -9.6590 -0.7188 20 6 7.8108 -7.3744 -1.3357 21 6 7.1356 -6.1736 -1.2371 22 9 7.5616 -5.0987 -1.9359 23 7 5.9608 -3.6649 -0.0923 24 6 5.3549 -2.4994 0.0049 25 1 -0.4850 0.8401 0.0004 26 1 2.1514 -3.5164 -0.4162 27 1 3.3477 -5.6823 -0.6013 28 1 5.9213 -9.2461 0.7578 29 1 8.7506 -9.7657 -0.0709 30 1 8.6800 -7.4536 -1.9718 31 1 5.9390 -1.6069 0.1742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241118315.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:01 Heat of formation + Delta-G solvation = -115.363491 kcal Electronic energy + Delta-G solvation = -22085.671044 eV Core-core repulsion = 18161.614270 eV Total energy + Delta-G solvation = -3924.056775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.11496 -50.00272 -41.52834 -40.52481 -39.25387 -37.40512 -34.61635 -33.24818 -32.75356 -31.51203 -29.65994 -27.36982 -24.88841 -24.60918 -23.76743 -22.75615 -20.12051 -19.99770 -19.34824 -18.57456 -18.16557 -17.70548 -17.41759 -16.91331 -16.76577 -16.42530 -16.33487 -16.07047 -15.97174 -15.67636 -15.15537 -14.83296 -14.52890 -14.49021 -14.25451 -14.20114 -13.75892 -13.04885 -12.84363 -12.79492 -12.56784 -12.16848 -11.95926 -11.78143 -11.07349 -10.76713 -10.65845 -10.12279 -9.90916 -9.14708 -8.59630 -6.33056 -0.49471 -0.13442 0.21539 0.39131 1.32095 1.35748 1.51080 2.10095 2.23178 2.55437 2.61915 2.77985 2.94931 3.14402 3.19689 3.32583 3.61724 3.80124 3.89656 3.96622 4.14148 4.23193 4.45784 4.60012 4.73902 4.80509 4.88354 5.01476 5.06317 5.16767 5.39642 5.53698 5.60973 5.88793 6.72077 6.76317 6.87057 7.36648 8.50703 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.003619 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.159154 B = 7735.032146 C = 8318.012212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.407 4.407 8 H 0.086 0.914 9 O -0.219 6.219 10 C 0.093 3.907 11 C -0.190 4.190 12 C -0.091 4.091 13 C 0.058 3.942 14 C -0.121 4.121 15 C 0.147 3.853 16 F -0.131 7.131 17 C -0.180 4.180 18 C 0.186 3.814 19 O -0.488 6.488 20 C -0.183 4.183 21 C 0.155 3.845 22 F -0.131 7.131 23 N -0.433 5.433 24 C 0.038 3.962 25 H 0.289 0.711 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.176 0.824 29 H 0.425 0.575 30 H 0.173 0.827 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.031 -17.209 -0.303 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.191 1.191 7 C -0.483 4.483 8 H 0.103 0.897 9 O -0.123 6.123 10 C 0.040 3.960 11 C -0.216 4.216 12 C -0.111 4.111 13 C -0.078 4.078 14 C -0.123 4.123 15 C 0.127 3.873 16 F -0.110 7.110 17 C -0.199 4.199 18 C 0.140 3.860 19 O -0.304 6.304 20 C -0.202 4.202 21 C 0.134 3.866 22 F -0.109 7.109 23 N -0.142 5.142 24 C -0.123 4.123 25 H 0.099 0.901 26 H 0.153 0.847 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.287 0.713 30 H 0.190 0.810 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 16.394 -16.952 -0.645 23.591 hybrid contribution -1.295 1.197 0.316 1.792 sum 15.099 -15.755 -0.329 21.824 Atomic orbital electron populations 1.69721 1.06977 1.30099 1.48154 1.25299 0.95858 1.02291 0.94769 0.85231 0.78955 0.77129 0.79593 1.18741 1.18315 1.19149 1.20742 0.77580 0.96515 1.53447 0.89678 1.83537 1.21730 1.26106 1.80923 1.20690 0.94024 0.86127 0.95205 1.21676 1.01479 0.92453 1.06018 1.21935 0.93919 0.98169 0.97080 1.19238 0.90411 0.91449 1.06673 1.18497 0.98631 0.92377 1.02816 1.17187 0.85803 0.93321 0.90996 1.91540 1.51937 1.96729 1.70749 1.21495 0.98198 0.97003 1.03171 1.17592 0.91244 0.84799 0.92360 1.84762 1.52383 1.32054 1.61171 1.21527 1.03602 0.89933 1.05157 1.17250 0.92826 0.84293 0.92195 1.91534 1.88690 1.54429 1.76248 1.67609 1.39262 0.97625 1.09662 1.22094 0.88751 0.96365 1.05101 0.90143 0.84665 0.83401 0.80674 0.71319 0.80968 0.80774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.27 13.96 21.61 0.30 -51.97 16 2 C 0.02 1.03 5.49 84.83 0.47 1.49 16 3 Si 0.97 43.32 28.62 68.60 1.96 45.29 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.41 -22.91 9.91 67.92 0.67 -22.24 16 8 H 0.09 4.99 5.57 -2.91 -0.02 4.98 16 9 O -0.22 -11.34 8.59 -22.35 -0.19 -11.54 16 10 C 0.09 4.29 6.67 22.73 0.15 4.44 16 11 C -0.19 -8.28 9.22 22.55 0.21 -8.07 16 12 C -0.09 -3.42 8.85 22.56 0.20 -3.22 16 13 C 0.06 2.15 5.96 41.95 0.25 2.41 16 14 C -0.12 -3.57 5.62 -19.95 -0.11 -3.68 16 15 C 0.15 3.63 7.13 22.59 0.16 3.79 16 16 F -0.13 -3.63 15.73 44.97 0.71 -2.92 16 17 C -0.18 -3.02 9.95 22.38 0.22 -2.80 16 18 C 0.19 2.73 6.70 22.55 0.15 2.88 16 19 O -0.49 -4.59 13.49 -91.77 -1.24 -5.83 16 20 C -0.18 -3.24 9.95 22.38 0.22 -3.02 16 21 C 0.15 4.05 7.23 22.59 0.16 4.21 16 22 F -0.13 -4.01 16.38 44.97 0.74 -3.28 16 23 N -0.43 -17.09 9.71 -184.38 -1.79 -18.88 16 24 C 0.04 1.57 11.14 84.87 0.95 2.52 16 25 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.14 6.16 5.83 -2.91 -0.02 6.14 16 27 H 0.15 4.72 7.63 -2.91 -0.02 4.69 16 28 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.42 -0.51 9.06 -74.06 -0.67 -1.18 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.18 6.29 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -67.62 292.20 4.74 -62.88 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.55 Total: 7.54 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.70 Total: -21.29 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.49 Total: -70.85 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.43 Total: -17.37 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 1.44 Total: -6.20 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.96 Total: 45.29 kcal Total: -67.62 4.74 -62.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241118315.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.488 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds