Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48500 * 109.46967 * 275.40390 * 3 2 1 5 5 H 1.48496 * 109.46953 * 35.40634 * 3 2 1 6 6 H 1.48508 * 109.47014 * 155.40567 * 3 2 1 7 7 C 1.39899 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00287 * 341.65222 * 7 2 1 9 9 C 1.41380 * 119.99778 * 161.65202 * 7 2 1 10 10 C 1.40805 * 120.57352 * 150.47131 * 9 7 2 11 11 N 1.31503 * 120.69864 * 180.02562 * 10 9 7 12 12 C 1.32160 * 122.07734 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.45744 * 179.97438 * 12 11 10 14 14 C 1.40063 * 121.08037 * 0.02562 * 12 11 10 15 15 C 1.48378 * 120.41855 * 180.02562 * 14 12 11 16 16 C 1.39397 * 120.09909 * 244.97959 * 15 14 12 17 17 C 1.38004 * 119.99568 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.20418 * 359.97413 * 17 16 15 19 19 C 1.38743 * 120.19841 * 0.02562 * 18 17 16 20 20 O 1.35923 * 119.99689 * 179.97438 * 19 18 17 21 21 C 1.38655 * 120.00017 * 359.71999 * 19 18 17 22 22 Cl 1.73605 * 120.09670 * 180.27606 * 21 19 18 23 23 C 1.39010 * 119.16397 * 359.97438 * 14 12 11 24 24 H 0.97001 * 119.99533 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.64930 * 0.04251 * 10 9 7 26 26 H 1.08004 * 120.00092 * 359.97219 * 16 15 14 27 27 H 1.08004 * 119.90161 * 179.97438 * 17 16 15 28 28 H 1.07993 * 119.90126 * 179.97438 * 18 17 16 29 29 H 0.96705 * 114.00282 * 89.99759 * 20 19 18 30 30 H 1.07998 * 120.93765 * 180.27476 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3760 2.1123 -1.3939 5 1 1.5019 2.6169 0.8111 6 1 3.5927 1.4098 0.5827 7 6 2.0080 -1.2116 -0.0005 8 1 1.5091 -2.1233 0.2935 9 6 3.3679 -1.2426 -0.3860 10 6 4.2428 -2.2061 0.1515 11 7 5.5083 -2.2369 -0.2049 12 6 6.0141 -1.3780 -1.0728 13 9 7.3222 -1.4576 -1.4008 14 6 5.2164 -0.3862 -1.6573 15 6 5.7995 0.5702 -2.6305 16 6 5.8674 1.9278 -2.3215 17 6 6.4096 2.8154 -3.2285 18 6 6.8873 2.3626 -4.4447 19 6 6.8238 1.0131 -4.7607 20 8 7.2940 0.5726 -5.9575 21 6 6.2855 0.1132 -3.8536 22 17 6.2113 -1.5768 -4.2435 23 6 3.8713 -0.3096 -1.3149 24 1 -0.4849 0.8401 0.0004 25 1 3.8706 -2.9276 0.8637 26 1 5.4949 2.2850 -1.3728 27 1 6.4612 3.8670 -2.9877 28 1 7.3103 3.0616 -5.1510 29 1 8.2284 0.3237 -5.9456 30 1 3.2291 0.4409 -1.7515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242802168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -42.765997 kcal Electronic energy + Delta-G solvation = -20602.489452 eV Core-core repulsion = 17109.917116 eV Total energy + Delta-G solvation = -3492.572336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.74412 -39.82021 -38.56358 -36.72778 -36.13027 -34.13639 -32.63962 -31.21349 -29.77941 -28.66353 -25.50904 -23.64039 -22.68381 -22.08442 -20.80429 -18.41163 -17.61771 -17.01200 -16.58461 -16.21391 -15.84979 -15.46513 -15.15023 -14.73065 -14.16586 -13.90222 -13.43667 -13.16088 -12.81570 -12.52645 -12.41263 -12.22401 -12.06470 -11.97607 -11.43821 -11.27623 -11.04135 -10.97834 -10.70923 -10.38893 -10.21539 -9.64598 -9.07417 -8.63787 -8.55023 -8.34576 -7.82489 -7.25555 -4.77616 1.09777 1.14179 2.00777 2.30534 2.39128 2.87589 2.97892 3.06619 3.53021 3.70842 4.06447 4.20041 4.72390 4.85710 4.97782 5.06248 5.19036 5.31567 5.56957 5.67453 5.84834 6.02430 6.13028 6.22370 6.33829 6.47210 6.55360 6.67165 6.87741 7.00761 7.27717 7.52524 7.59201 7.99056 8.12013 8.41002 8.94516 9.74938 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.006891 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.201543 B = 4062.309390 C = 4873.104231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.084 3.916 3 Si 0.899 3.101 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.422 4.422 8 H 0.102 0.898 9 C 0.035 3.965 10 C 0.040 3.960 11 N -0.481 5.481 12 C 0.176 3.824 13 F -0.139 7.139 14 C -0.082 4.082 15 C -0.001 4.001 16 C -0.106 4.106 17 C -0.101 4.101 18 C -0.140 4.140 19 C 0.111 3.889 20 O -0.488 6.488 21 C -0.047 4.047 22 Cl -0.046 7.046 23 C -0.169 4.169 24 H 0.291 0.709 25 H 0.148 0.852 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.389 0.611 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 6.364 -6.119 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.450 4.450 8 H 0.120 0.880 9 C 0.030 3.970 10 C -0.124 4.124 11 N -0.192 5.192 12 C 0.024 3.976 13 F -0.119 7.119 14 C -0.086 4.086 15 C -0.002 4.002 16 C -0.124 4.124 17 C -0.120 4.120 18 C -0.159 4.159 19 C 0.065 3.935 20 O -0.297 6.297 21 C -0.074 4.074 22 Cl -0.016 7.016 23 C -0.193 4.193 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.245 0.755 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.148 5.785 -6.017 12.383 hybrid contribution 0.269 1.092 -0.355 1.179 sum 9.417 6.877 -6.372 13.288 Atomic orbital electron populations 1.69681 1.08067 1.30894 1.32318 1.26197 0.94823 1.01843 0.90951 0.86472 0.81598 0.80003 0.79512 1.18842 1.20861 1.16524 1.19451 0.92339 0.96561 1.36676 0.88046 1.18555 0.94595 0.92545 0.91324 1.22455 0.86170 1.02083 1.01663 1.66376 1.16987 1.23416 1.12468 1.17339 0.79277 0.98106 1.02842 1.91429 1.32876 1.96144 1.91411 1.18838 0.94612 0.96293 0.98813 1.18615 0.96377 0.93487 0.91769 1.21282 0.99436 0.91434 1.00294 1.21012 0.97894 0.99935 0.93124 1.21317 1.02738 0.94257 0.97572 1.18045 0.99401 0.90808 0.85221 1.84847 1.31006 1.86058 1.27827 1.21500 1.04643 0.86422 0.94851 1.98373 1.96759 1.12717 1.93788 1.21286 0.92904 1.03901 1.01259 0.89841 0.83472 0.84939 0.84894 0.84715 0.75472 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.15 13.93 55.54 0.77 -18.38 16 2 C 0.08 1.99 5.42 -17.34 -0.09 1.90 16 3 Si 0.90 18.64 24.53 -169.99 -4.17 14.47 16 4 H -0.26 -5.28 6.70 56.52 0.38 -4.90 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.24 -5.10 6.86 56.52 0.39 -4.72 16 7 C -0.42 -10.31 9.59 -37.77 -0.36 -10.67 16 8 H 0.10 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.04 0.83 5.11 -106.70 -0.55 0.28 16 10 C 0.04 0.91 10.96 -16.72 -0.18 0.73 16 11 N -0.48 -11.29 10.33 -12.59 -0.13 -11.42 16 12 C 0.18 4.01 7.60 -16.73 -0.13 3.89 16 13 F -0.14 -3.06 16.03 2.25 0.04 -3.02 16 14 C -0.08 -1.79 4.67 -104.75 -0.49 -2.28 16 15 C 0.00 -0.02 5.03 -104.89 -0.53 -0.54 16 16 C -0.11 -1.71 9.73 -39.24 -0.38 -2.09 16 17 C -0.10 -1.30 10.03 -39.65 -0.40 -1.70 16 18 C -0.14 -1.76 9.98 -39.38 -0.39 -2.15 16 19 C 0.11 1.63 6.69 -39.24 -0.26 1.36 16 20 O -0.49 -6.18 12.96 -19.50 -0.25 -6.43 16 21 C -0.05 -0.83 6.16 -39.03 -0.24 -1.07 16 22 Cl -0.05 -0.83 26.30 -51.86 -1.36 -2.19 16 23 C -0.17 -3.84 6.98 -38.27 -0.27 -4.11 16 24 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 25 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 26 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 27 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.39 3.13 9.06 45.56 0.41 3.54 16 30 H 0.12 2.69 4.81 -52.49 -0.25 2.44 16 LS Contribution 285.16 15.07 4.30 4.30 Total: -1.00 -27.74 285.16 -6.21 -33.95 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.12 Total: 5.19 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -4.27 Total: -16.45 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.64 Total: -29.80 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.25 Total: -6.43 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.17 Total: 14.47 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.36 Total: -2.19 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.74 -6.21 -33.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242802168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.820 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds