Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86801 * 120.00170 * 2 1 4 4 H 1.48500 * 109.46967 * 275.40390 * 3 2 1 5 5 H 1.48496 * 109.46953 * 35.40634 * 3 2 1 6 6 H 1.48508 * 109.47014 * 155.40567 * 3 2 1 7 7 C 1.39899 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00287 * 341.65222 * 7 2 1 9 9 C 1.41380 * 119.99778 * 161.65202 * 7 2 1 10 10 C 1.40805 * 120.57352 * 150.47131 * 9 7 2 11 11 N 1.31503 * 120.69864 * 180.02562 * 10 9 7 12 12 C 1.32160 * 122.07734 * 359.97438 * 11 10 9 13 13 F 1.35096 * 119.45744 * 179.97438 * 12 11 10 14 14 C 1.40063 * 121.08037 * 0.02562 * 12 11 10 15 15 C 1.48378 * 120.41855 * 180.02562 * 14 12 11 16 16 C 1.39397 * 120.09909 * 244.97959 * 15 14 12 17 17 C 1.38004 * 119.99568 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.20418 * 359.97413 * 17 16 15 19 19 C 1.38743 * 120.19841 * 0.02562 * 18 17 16 20 20 O 1.35923 * 119.99689 * 179.97438 * 19 18 17 21 21 C 1.38655 * 120.00017 * 359.71999 * 19 18 17 22 22 Cl 1.73605 * 120.09670 * 180.27606 * 21 19 18 23 23 C 1.39010 * 119.16397 * 359.97438 * 14 12 11 24 24 H 0.97001 * 119.99533 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.64930 * 0.04251 * 10 9 7 26 26 H 1.08004 * 120.00092 * 359.97219 * 16 15 14 27 27 H 1.08004 * 119.90161 * 179.97438 * 17 16 15 28 28 H 1.07993 * 119.90126 * 179.97438 * 18 17 16 29 29 H 0.96705 * 114.00282 * 89.99759 * 20 19 18 30 30 H 1.07998 * 120.93765 * 180.27476 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3760 2.1123 -1.3939 5 1 1.5019 2.6169 0.8111 6 1 3.5927 1.4098 0.5827 7 6 2.0080 -1.2116 -0.0005 8 1 1.5091 -2.1233 0.2935 9 6 3.3679 -1.2426 -0.3860 10 6 4.2428 -2.2061 0.1515 11 7 5.5083 -2.2369 -0.2049 12 6 6.0141 -1.3780 -1.0728 13 9 7.3222 -1.4576 -1.4008 14 6 5.2164 -0.3862 -1.6573 15 6 5.7995 0.5702 -2.6305 16 6 5.8674 1.9278 -2.3215 17 6 6.4096 2.8154 -3.2285 18 6 6.8873 2.3626 -4.4447 19 6 6.8238 1.0131 -4.7607 20 8 7.2940 0.5726 -5.9575 21 6 6.2855 0.1132 -3.8536 22 17 6.2113 -1.5768 -4.2435 23 6 3.8713 -0.3096 -1.3149 24 1 -0.4849 0.8401 0.0004 25 1 3.8706 -2.9276 0.8637 26 1 5.4949 2.2850 -1.3728 27 1 6.4612 3.8670 -2.9877 28 1 7.3103 3.0616 -5.1510 29 1 8.2284 0.3237 -5.9456 30 1 3.2291 0.4409 -1.7515 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242802168.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -60.625839 kcal Electronic energy + Delta-G solvation = -20603.263913 eV Core-core repulsion = 17109.917116 eV Total energy + Delta-G solvation = -3493.346797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.51343 -41.06980 -40.17068 -37.83796 -37.42776 -35.95079 -34.11674 -32.96656 -30.95405 -30.04538 -27.33653 -25.14503 -24.08815 -23.45967 -22.30375 -19.81692 -19.16635 -18.69205 -17.90181 -17.75486 -17.27876 -16.92769 -16.44962 -16.39105 -15.44454 -15.22976 -15.05463 -14.86628 -14.25376 -14.17045 -14.03965 -13.78327 -13.37836 -13.34313 -12.98065 -12.76807 -12.52128 -12.44696 -12.08247 -11.95471 -11.59522 -11.40061 -10.61632 -10.38223 -9.90468 -9.69307 -9.48920 -9.05621 -6.65144 -0.17474 0.03006 0.36462 0.51228 1.12169 1.20888 1.32582 1.42409 2.02365 2.34960 2.46464 3.00211 3.09229 3.24504 3.50213 3.94657 3.95704 4.03274 4.25127 4.28383 4.47275 4.62358 4.63748 4.82256 5.07003 5.09566 5.17326 5.22961 5.32051 5.47313 5.64276 5.78833 6.10428 6.30491 6.55819 6.68900 7.13637 7.99828 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.006891 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.201543 B = 4062.309390 C = 4873.104231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.054 3.946 3 Si 0.944 3.056 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.447 4.447 8 H 0.080 0.920 9 C 0.028 3.972 10 C 0.032 3.968 11 N -0.496 5.496 12 C 0.167 3.833 13 F -0.136 7.136 14 C -0.071 4.071 15 C -0.038 4.038 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.124 4.124 19 C 0.115 3.885 20 O -0.492 6.492 21 C -0.069 4.069 22 Cl -0.067 7.067 23 C -0.177 4.177 24 H 0.301 0.699 25 H 0.164 0.836 26 H 0.134 0.866 27 H 0.176 0.824 28 H 0.175 0.825 29 H 0.411 0.589 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 9.288 -7.499 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.475 4.475 8 H 0.098 0.902 9 C 0.023 3.977 10 C -0.131 4.131 11 N -0.208 5.208 12 C 0.015 3.985 13 F -0.116 7.116 14 C -0.074 4.074 15 C -0.040 4.040 16 C -0.138 4.138 17 C -0.102 4.102 18 C -0.142 4.142 19 C 0.069 3.931 20 O -0.305 6.305 21 C -0.097 4.097 22 Cl -0.038 7.038 23 C -0.202 4.202 24 H 0.112 0.888 25 H 0.181 0.819 26 H 0.152 0.848 27 H 0.194 0.806 28 H 0.193 0.807 29 H 0.270 0.730 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.750 8.694 -7.400 15.682 hybrid contribution -0.097 0.183 -0.026 0.209 sum 10.654 8.878 -7.426 15.731 Atomic orbital electron populations 1.69689 1.09025 1.32270 1.33233 1.26799 0.95363 1.04060 0.90284 0.85785 0.80142 0.77140 0.80305 1.17429 1.19190 1.17421 1.19431 0.93002 0.96535 1.38561 0.90158 1.18657 0.94371 0.93132 0.91529 1.22703 0.85975 1.02410 1.02056 1.66383 1.17250 1.24067 1.13089 1.17609 0.79593 0.98444 1.02814 1.91425 1.32619 1.96149 1.91375 1.19031 0.93943 0.96071 0.98375 1.18622 0.99068 0.94239 0.92043 1.21458 1.00239 0.90687 1.01378 1.21468 0.95309 1.01365 0.92076 1.21783 1.00837 0.93636 0.97920 1.18214 0.98655 0.91281 0.84957 1.84798 1.32903 1.86091 1.26705 1.21719 1.06380 0.85938 0.95629 1.98358 1.96995 1.14544 1.93866 1.21379 0.93577 1.03933 1.01263 0.88774 0.81915 0.84815 0.80638 0.80724 0.73004 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.29 13.93 21.82 0.30 -39.99 16 2 C 0.05 2.60 5.42 85.24 0.46 3.06 16 3 Si 0.94 37.60 24.53 68.60 1.68 39.28 16 4 H -0.25 -9.34 6.70 99.48 0.67 -8.67 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.25 -10.25 6.86 99.48 0.68 -9.56 16 7 C -0.45 -22.52 9.59 23.45 0.22 -22.30 16 8 H 0.08 4.25 8.06 -2.91 -0.02 4.23 16 9 C 0.03 1.35 5.11 -21.21 -0.11 1.24 16 10 C 0.03 1.47 10.96 85.37 0.94 2.41 16 11 N -0.50 -23.55 10.33 -193.73 -2.00 -25.55 16 12 C 0.17 7.64 7.60 85.09 0.65 8.29 16 13 F -0.14 -5.97 16.03 44.97 0.72 -5.25 16 14 C -0.07 -3.06 4.67 -19.95 -0.09 -3.16 16 15 C -0.04 -1.39 5.03 -20.04 -0.10 -1.49 16 16 C -0.12 -3.51 9.73 22.49 0.22 -3.29 16 17 C -0.08 -1.74 10.03 22.23 0.22 -1.52 16 18 C -0.12 -2.45 9.98 22.40 0.22 -2.23 16 19 C 0.11 2.99 6.69 22.49 0.15 3.14 16 20 O -0.49 -10.88 12.96 -92.68 -1.20 -12.08 16 21 C -0.07 -2.34 6.16 22.63 0.14 -2.20 16 22 Cl -0.07 -2.40 26.30 -2.72 -0.07 -2.47 16 23 C -0.18 -8.06 6.98 23.12 0.16 -7.90 16 24 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 25 H 0.16 6.79 8.06 -2.91 -0.02 6.76 16 26 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.41 5.26 9.06 -74.05 -0.67 4.58 16 30 H 0.12 5.46 4.81 -2.91 -0.01 5.44 16 Total: -1.00 -60.93 285.16 3.00 -57.93 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.48 Total: 14.08 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.08 Total: -25.94 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -1.70 Total: -65.54 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.20 Total: -12.08 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.72 Total: -5.25 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 1.68 Total: 39.28 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.07 Total: -2.47 kcal Total: -60.93 3.00 -57.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242802168.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.698 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds