Wall clock time and date at job start Tue Mar 31 2020 07:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47221 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99868 * 3 2 1 6 6 H 1.48493 * 109.47097 * 149.99616 * 3 2 1 7 7 C 1.38642 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99629 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.35723 * 116.99915 * 185.05327 * 9 7 2 11 11 C 1.39452 * 120.38270 * 354.52016 * 10 9 7 12 12 C 1.38178 * 118.46618 * 179.72610 * 11 10 9 13 13 C 1.39493 * 119.14278 * 0.27433 * 12 11 10 14 14 C 1.48190 * 119.65753 * 180.02562 * 13 12 11 15 15 C 1.39463 * 120.07574 * 359.72513 * 14 13 12 16 16 C 1.37884 * 119.97931 * 179.68046 * 15 14 13 17 17 C 1.38846 * 120.14517 * 0.61231 * 16 15 14 18 18 O 1.35908 * 119.91687 * 179.69829 * 17 16 15 19 19 C 1.38932 * 120.16092 * 359.68491 * 17 16 15 20 20 F 1.35101 * 119.99602 * 180.02562 * 19 17 16 21 21 C 1.38295 * 120.01136 * 359.97438 * 19 17 16 22 22 F 1.35099 * 120.07459 * 180.02562 * 21 19 17 23 23 N 1.32717 * 120.68271 * 359.97438 * 13 12 11 24 24 C 1.31691 * 121.67675 * 0.02562 * 23 13 12 25 25 H 0.96995 * 120.00383 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.76264 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.43317 * 180.25527 * 12 11 10 28 28 H 1.07998 * 120.00688 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.92116 * 180.31934 * 16 15 14 30 30 H 0.96701 * 114.00363 * 269.98013 * 18 17 16 31 31 H 1.08001 * 119.60303 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3682 0.0005 10 6 2.0701 -3.5040 0.1076 11 6 3.4634 -3.4460 0.0969 12 6 4.1726 -4.6261 0.2142 13 6 3.4756 -5.8286 0.3327 14 6 4.2247 -7.1009 0.4597 15 6 5.6193 -7.0943 0.4547 16 6 6.3144 -8.2786 0.5796 17 6 5.6289 -9.4803 0.6977 18 8 6.3187 -10.6455 0.8144 19 6 4.2396 -9.4944 0.6971 20 9 3.5760 -10.6655 0.8127 21 6 3.5359 -8.3098 0.5793 22 9 2.1850 -8.3220 0.5791 23 7 2.1485 -5.8450 0.3339 24 6 1.4432 -4.7383 0.2239 25 1 -0.4850 0.8400 -0.0004 26 1 3.9762 -2.5002 0.0033 27 1 5.2525 -4.6177 0.2138 28 1 6.1547 -6.1614 0.3578 29 1 7.3944 -8.2719 0.5808 30 1 6.5195 -11.0701 -0.0309 31 1 0.3645 -4.7904 0.2292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243339867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:57 Heat of formation + Delta-G solvation = -90.996988 kcal Electronic energy + Delta-G solvation = -21913.987690 eV Core-core repulsion = 17990.987526 eV Total energy + Delta-G solvation = -3923.000164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.25951 -48.23863 -39.99925 -39.28800 -37.60130 -36.50250 -32.71303 -31.74433 -31.12318 -30.35063 -28.02726 -25.73413 -23.69179 -23.46515 -22.12282 -21.36342 -18.93891 -18.42688 -17.76454 -17.49146 -17.04469 -16.53326 -15.96320 -15.55333 -15.21833 -14.97976 -14.71707 -14.66306 -14.20526 -14.15956 -14.07818 -13.48420 -13.27162 -12.74706 -12.56649 -12.50030 -11.95793 -11.87485 -11.68555 -11.40560 -11.20849 -10.92903 -10.67558 -9.96927 -9.35443 -9.19315 -8.89026 -8.82116 -8.77192 -7.35358 -6.76555 -4.31484 0.55182 0.91053 1.89503 2.08384 2.96157 2.97235 3.02867 3.28305 3.55450 3.71697 4.07433 4.42433 4.47467 4.49713 4.60741 4.82027 4.84855 4.98490 5.27666 5.39786 5.53948 5.62688 5.73286 5.87993 5.93625 6.04622 6.14123 6.40055 6.56094 6.69867 6.83038 7.03162 7.27376 7.32502 7.65500 8.59103 8.67236 9.29719 10.38968 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003273 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.776447 B = 8552.639174 C = 9266.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.152 6.152 10 C 0.111 3.889 11 C -0.205 4.205 12 C -0.089 4.089 13 C 0.021 3.979 14 C -0.012 4.012 15 C -0.092 4.092 16 C -0.123 4.123 17 C 0.081 3.919 18 O -0.485 6.485 19 C 0.038 3.962 20 F -0.126 7.126 21 C 0.097 3.903 22 F -0.101 7.101 23 N -0.418 5.418 24 C 0.038 3.962 25 H 0.277 0.723 26 H 0.141 0.859 27 H 0.124 0.876 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.391 0.609 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.370 -11.457 -0.785 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.051 6.051 10 C 0.052 3.948 11 C -0.231 4.231 12 C -0.108 4.108 13 C -0.112 4.112 14 C -0.014 4.014 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.035 3.965 18 O -0.295 6.295 19 C 0.017 3.983 20 F -0.105 7.105 21 C 0.076 3.924 22 F -0.079 7.079 23 N -0.128 5.128 24 C -0.127 4.127 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.142 0.858 28 H 0.163 0.837 29 H 0.162 0.838 30 H 0.247 0.753 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.371 -11.916 -0.121 16.471 hybrid contribution 0.564 1.285 -0.557 1.510 sum 11.935 -10.631 -0.678 15.997 Atomic orbital electron populations 1.70032 1.06162 1.28586 1.42897 1.25430 0.95957 0.99252 0.95779 0.85612 0.78996 0.79294 0.79037 1.19514 1.19906 1.18886 1.21477 0.92125 0.80496 1.52806 0.88541 1.83958 1.34549 1.11567 1.74989 1.20585 0.91066 0.89299 0.93816 1.21438 0.93823 0.99004 1.08811 1.21629 0.99781 0.91872 0.97563 1.18729 0.89637 0.90614 1.12255 1.18558 0.92793 0.90472 0.99540 1.21008 0.91847 0.98730 0.99564 1.21179 1.00917 0.90634 1.01414 1.18120 0.87009 0.87198 1.04223 1.84865 1.74772 1.35012 1.34842 1.18013 0.90089 0.81045 1.09175 1.91498 1.80539 1.44771 1.93676 1.17491 0.78559 0.91842 1.04541 1.91612 1.26380 1.96856 1.93090 1.67514 1.06789 1.29825 1.08632 1.21793 0.99854 0.85096 1.06005 0.91335 0.84193 0.85796 0.83678 0.83814 0.75283 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.96 13.67 55.48 0.76 -22.20 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.95 18.72 29.55 -169.99 -5.02 13.69 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.39 -10.03 9.49 30.88 0.29 -9.74 16 8 H 0.10 2.23 5.25 -52.49 -0.28 1.95 16 9 O -0.15 -3.98 9.76 0.19 0.00 -3.98 16 10 C 0.11 2.51 6.67 -38.88 -0.26 2.25 16 11 C -0.21 -4.04 9.25 -39.15 -0.36 -4.40 16 12 C -0.09 -1.50 9.45 -39.14 -0.37 -1.87 16 13 C 0.02 0.38 6.73 -82.93 -0.56 -0.18 16 14 C -0.01 -0.18 5.88 -104.83 -0.62 -0.80 16 15 C -0.09 -1.06 9.41 -39.25 -0.37 -1.43 16 16 C -0.12 -1.23 9.97 -39.49 -0.39 -1.63 16 17 C 0.08 0.95 6.71 -39.10 -0.26 0.68 16 18 O -0.49 -4.84 13.35 -19.45 -0.26 -5.10 16 19 C 0.04 0.54 7.31 -39.30 -0.29 0.25 16 20 F -0.13 -1.92 17.02 2.25 0.04 -1.88 16 21 C 0.10 1.58 7.28 -39.04 -0.28 1.30 16 22 F -0.10 -1.90 15.21 2.25 0.03 -1.86 16 23 N -0.42 -8.61 8.31 -9.62 -0.08 -8.69 16 24 C 0.04 0.81 11.14 -17.36 -0.19 0.61 16 25 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.14 2.63 5.75 -52.49 -0.30 2.32 16 27 H 0.12 1.58 6.17 -52.49 -0.32 1.26 16 28 H 0.15 1.32 6.16 -52.49 -0.32 1.00 16 29 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.39 1.92 9.06 45.56 0.41 2.33 16 31 H 0.16 3.08 8.06 -52.49 -0.42 2.66 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -30.61 289.81 -4.71 -35.32 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -0.79 Total: 4.27 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -3.76 Total: -13.95 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.68 Total: -30.88 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.26 Total: -9.08 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.07 Total: -3.74 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.61 -4.71 -35.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243339867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.675 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds