Wall clock time and date at job start Tue Mar 31 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86799 * 119.99839 * 2 1 4 4 H 1.48504 * 109.47221 * 269.99905 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99868 * 3 2 1 6 6 H 1.48493 * 109.47097 * 149.99616 * 3 2 1 7 7 C 1.38642 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99629 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.35723 * 116.99915 * 185.05327 * 9 7 2 11 11 C 1.39452 * 120.38270 * 354.52016 * 10 9 7 12 12 C 1.38178 * 118.46618 * 179.72610 * 11 10 9 13 13 C 1.39493 * 119.14278 * 0.27433 * 12 11 10 14 14 C 1.48190 * 119.65753 * 180.02562 * 13 12 11 15 15 C 1.39463 * 120.07574 * 359.72513 * 14 13 12 16 16 C 1.37884 * 119.97931 * 179.68046 * 15 14 13 17 17 C 1.38846 * 120.14517 * 0.61231 * 16 15 14 18 18 O 1.35908 * 119.91687 * 179.69829 * 17 16 15 19 19 C 1.38932 * 120.16092 * 359.68491 * 17 16 15 20 20 F 1.35101 * 119.99602 * 180.02562 * 19 17 16 21 21 C 1.38295 * 120.01136 * 359.97438 * 19 17 16 22 22 F 1.35099 * 120.07459 * 180.02562 * 21 19 17 23 23 N 1.32717 * 120.68271 * 359.97438 * 13 12 11 24 24 C 1.31691 * 121.67675 * 0.02562 * 23 13 12 25 25 H 0.96995 * 120.00383 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.76264 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.43317 * 180.25527 * 12 11 10 28 28 H 1.07998 * 120.00688 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.92116 * 180.31934 * 16 15 14 30 30 H 0.96701 * 114.00363 * 269.98013 * 18 17 16 31 31 H 1.08001 * 119.60303 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3682 0.0005 10 6 2.0701 -3.5040 0.1076 11 6 3.4634 -3.4460 0.0969 12 6 4.1726 -4.6261 0.2142 13 6 3.4756 -5.8286 0.3327 14 6 4.2247 -7.1009 0.4597 15 6 5.6193 -7.0943 0.4547 16 6 6.3144 -8.2786 0.5796 17 6 5.6289 -9.4803 0.6977 18 8 6.3187 -10.6455 0.8144 19 6 4.2396 -9.4944 0.6971 20 9 3.5760 -10.6655 0.8127 21 6 3.5359 -8.3098 0.5793 22 9 2.1850 -8.3220 0.5791 23 7 2.1485 -5.8450 0.3339 24 6 1.4432 -4.7383 0.2239 25 1 -0.4850 0.8400 -0.0004 26 1 3.9762 -2.5002 0.0033 27 1 5.2525 -4.6177 0.2138 28 1 6.1547 -6.1614 0.3578 29 1 7.3944 -8.2719 0.5808 30 1 6.5195 -11.0701 -0.0309 31 1 0.3645 -4.7904 0.2292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243339867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:56 Heat of formation + Delta-G solvation = -112.582607 kcal Electronic energy + Delta-G solvation = -21914.923712 eV Core-core repulsion = 17990.987526 eV Total energy + Delta-G solvation = -3923.936186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.44444 -49.49889 -41.47083 -40.42459 -39.10343 -37.58127 -34.46639 -33.22669 -32.49743 -31.40567 -29.40705 -27.44176 -25.01042 -24.78531 -23.38136 -22.74072 -20.12630 -19.87655 -19.14775 -18.79540 -18.31860 -17.69737 -17.24774 -17.00661 -16.55234 -16.28432 -16.06842 -15.89479 -15.80608 -15.40725 -15.28517 -14.99212 -14.39736 -14.30217 -14.15979 -13.67098 -13.59868 -13.09261 -12.90917 -12.73039 -12.61223 -12.13897 -11.85820 -11.69968 -10.99141 -10.65388 -10.43566 -10.19552 -9.83769 -8.87539 -8.54975 -6.22384 -0.57139 -0.12391 0.34457 0.66158 1.37618 1.46827 1.55549 2.13044 2.21198 2.54092 2.84487 3.03499 3.13988 3.15860 3.38825 3.42029 3.58178 3.82912 3.94560 4.05679 4.22042 4.34902 4.56506 4.67006 4.85665 4.89250 5.00181 5.02355 5.13305 5.27118 5.40249 5.57685 5.74500 5.89139 6.67601 6.87281 7.02674 7.59463 8.66293 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003273 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.776447 B = 8552.639174 C = 9266.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.022 2.978 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.246 1.246 7 C -0.418 4.418 8 H 0.114 0.886 9 O -0.208 6.208 10 C 0.084 3.916 11 C -0.197 4.197 12 C -0.080 4.080 13 C 0.041 3.959 14 C -0.047 4.047 15 C -0.064 4.064 16 C -0.104 4.104 17 C 0.109 3.891 18 O -0.490 6.490 19 C 0.014 3.986 20 F -0.138 7.138 21 C 0.073 3.927 22 F -0.128 7.128 23 N -0.443 5.443 24 C 0.020 3.980 25 H 0.276 0.724 26 H 0.152 0.848 27 H 0.183 0.817 28 H 0.183 0.817 29 H 0.192 0.808 30 H 0.418 0.582 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.047 -12.861 -0.715 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.217 4.217 3 Si 0.841 3.159 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.169 1.169 7 C -0.494 4.494 8 H 0.131 0.869 9 O -0.111 6.111 10 C 0.029 3.971 11 C -0.223 4.223 12 C -0.099 4.099 13 C -0.095 4.095 14 C -0.049 4.049 15 C -0.083 4.083 16 C -0.122 4.122 17 C 0.062 3.938 18 O -0.304 6.304 19 C -0.007 4.007 20 F -0.117 7.117 21 C 0.052 3.948 22 F -0.107 7.107 23 N -0.152 5.152 24 C -0.142 4.142 25 H 0.085 0.915 26 H 0.170 0.830 27 H 0.200 0.800 28 H 0.200 0.800 29 H 0.209 0.791 30 H 0.279 0.721 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.064 -13.394 -0.068 21.693 hybrid contribution -0.835 1.031 -0.538 1.432 sum 16.228 -12.363 -0.606 20.410 Atomic orbital electron populations 1.70184 1.08274 1.29360 1.46970 1.26701 0.96815 1.03011 0.95177 0.84528 0.78002 0.74000 0.79378 1.18688 1.19990 1.16912 1.21992 0.93044 0.80810 1.53506 0.86865 1.83959 1.35897 1.12492 1.78788 1.20954 0.92702 0.88805 0.94609 1.21743 0.92623 1.00788 1.07125 1.22116 1.02427 0.89753 0.95567 1.19509 0.89095 0.92860 1.08020 1.18636 0.94466 0.88576 1.03200 1.21446 0.89718 1.00965 0.96152 1.21642 1.02951 0.88817 0.98779 1.18327 0.85797 0.88724 1.00942 1.84805 1.73965 1.34556 1.37041 1.18298 0.91335 0.80138 1.10938 1.91465 1.81070 1.45165 1.93972 1.17925 0.77719 0.93331 1.05856 1.91540 1.28504 1.97073 1.93550 1.67594 1.08533 1.29373 1.09683 1.21791 1.00059 0.85432 1.06925 0.91460 0.83029 0.80016 0.79986 0.79119 0.72112 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.05 13.67 21.61 0.30 -52.76 16 2 C -0.02 -0.93 5.49 84.83 0.47 -0.47 16 3 Si 1.02 39.18 29.55 68.60 2.03 41.20 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 6 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 7 C -0.42 -22.27 9.49 67.92 0.64 -21.62 16 8 H 0.11 5.28 5.25 -2.91 -0.02 5.27 16 9 O -0.21 -11.70 9.76 -22.22 -0.22 -11.92 16 10 C 0.08 3.97 6.67 22.73 0.15 4.12 16 11 C -0.20 -7.51 9.25 22.55 0.21 -7.30 16 12 C -0.08 -2.40 9.45 22.56 0.21 -2.19 16 13 C 0.04 1.42 6.73 41.96 0.28 1.70 16 14 C -0.05 -1.31 5.88 -20.00 -0.12 -1.42 16 15 C -0.06 -1.06 9.41 22.48 0.21 -0.85 16 16 C -0.10 -1.34 9.97 22.33 0.22 -1.12 16 17 C 0.11 2.01 6.71 22.58 0.15 2.16 16 18 O -0.49 -7.16 13.35 -92.51 -1.24 -8.40 16 19 C 0.01 0.36 7.31 22.45 0.16 0.52 16 20 F -0.14 -4.06 17.02 44.97 0.77 -3.29 16 21 C 0.07 2.29 7.28 22.62 0.16 2.45 16 22 F -0.13 -4.95 15.21 44.97 0.68 -4.26 16 23 N -0.44 -18.58 8.31 -184.35 -1.53 -20.11 16 24 C 0.02 0.89 11.14 84.88 0.95 1.83 16 25 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.15 5.40 5.75 -2.91 -0.02 5.38 16 27 H 0.18 3.31 6.17 -2.91 -0.02 3.29 16 28 H 0.18 1.69 6.16 -2.91 -0.02 1.68 16 29 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.42 1.78 9.06 -74.06 -0.67 1.11 16 31 H 0.15 6.56 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -75.00 289.81 5.06 -69.94 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.56 Total: 11.77 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.71 Total: -22.18 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -1.24 Total: -72.87 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -1.45 Total: -20.31 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.45 Total: -7.55 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Total: -75.00 5.06 -69.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243339867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.638 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds