Wall clock time and date at job start Tue Mar 31 2020 07:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86805 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46877 * 299.99849 * 3 2 1 6 6 H 1.48495 * 109.47098 * 59.99744 * 3 2 1 7 7 C 1.38641 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.35718 * 117.00078 * 185.05223 * 9 7 2 11 11 C 1.39444 * 120.38432 * 354.51468 * 10 9 7 12 12 C 1.38192 * 118.46272 * 179.69716 * 11 10 9 13 13 C 1.39473 * 119.14380 * 0.28349 * 12 11 10 14 14 C 1.48195 * 119.66047 * 179.97438 * 13 12 11 15 15 C 1.39448 * 120.13067 * 359.97438 * 14 13 12 16 16 C 1.38131 * 119.94275 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.89150 * 179.97438 * 16 15 14 18 18 C 1.38608 * 120.21409 * 359.97438 * 16 15 14 19 19 C 1.38334 * 120.27002 * 0.02562 * 18 16 15 20 20 F 1.35103 * 119.97084 * 180.02562 * 19 18 16 21 21 C 1.38777 * 120.05389 * 359.74386 * 19 18 16 22 22 O 1.35917 * 120.10502 * 180.25764 * 21 19 18 23 23 N 1.32722 * 120.68686 * 359.97267 * 13 12 11 24 24 C 1.31677 * 121.67454 * 0.02562 * 23 13 12 25 25 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.76471 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.42728 * 180.29666 * 12 11 10 28 28 H 1.08002 * 120.02951 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.86853 * 180.02562 * 18 16 15 30 30 H 0.96700 * 113.99927 * 270.25208 * 22 21 19 31 31 H 1.08006 * 119.59995 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3349 -2.3682 0.0005 10 6 2.0700 -3.5040 0.1076 11 6 3.4632 -3.4461 0.0968 12 6 4.1724 -4.6262 0.2146 13 6 3.4755 -5.8285 0.3336 14 6 4.2245 -7.1009 0.4601 15 6 5.6190 -7.0954 0.4595 16 6 6.3133 -8.2836 0.5782 17 9 7.6643 -8.2771 0.5770 18 6 5.6283 -9.4827 0.6985 19 6 4.2451 -9.4984 0.7001 20 9 3.5836 -10.6705 0.8182 21 6 3.5364 -8.3107 0.5864 22 8 2.1773 -8.3245 0.5931 23 7 2.1484 -5.8449 0.3348 24 6 1.4432 -4.7384 0.2243 25 1 -0.4850 0.8400 0.0004 26 1 3.9761 -2.5002 0.0030 27 1 5.2524 -4.6177 0.2148 28 1 6.1557 -6.1628 0.3664 29 1 6.1768 -10.4084 0.7914 30 1 1.7806 -8.4186 -0.2838 31 1 0.3644 -4.7905 0.2296 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243504595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:08 Heat of formation + Delta-G solvation = -91.954724 kcal Electronic energy + Delta-G solvation = -21898.480896 eV Core-core repulsion = 17975.439201 eV Total energy + Delta-G solvation = -3923.041694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.065 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.06099 -48.99358 -40.12167 -39.01805 -37.20870 -36.37276 -32.77784 -32.07497 -31.29942 -29.40259 -28.36238 -25.82815 -23.78561 -23.40027 -22.05844 -21.34352 -18.60437 -18.35048 -18.02972 -17.50246 -16.97328 -16.20643 -15.92382 -15.57718 -15.42717 -15.25027 -14.89484 -14.70424 -14.37096 -14.21080 -13.94830 -13.38955 -13.18855 -12.81941 -12.55773 -12.48232 -11.95410 -11.94986 -11.58955 -11.54757 -11.22573 -10.65867 -10.52055 -9.95878 -9.47105 -9.21338 -8.92390 -8.84309 -8.56621 -7.39972 -6.77979 -4.32738 0.60145 0.86991 1.89890 2.10233 2.95525 2.96978 3.03308 3.29310 3.68582 3.72407 4.11858 4.30837 4.43709 4.52656 4.70936 4.82176 4.92585 4.97604 5.26090 5.43163 5.55259 5.61861 5.73388 5.79722 5.88335 6.00644 6.18473 6.40160 6.56599 6.69772 6.82802 7.02927 7.27737 7.64420 7.81289 8.59216 8.66347 9.28292 10.37540 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003468 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.505049 B = 8071.187983 C = 9037.486456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.152 6.152 10 C 0.112 3.888 11 C -0.207 4.207 12 C -0.089 4.089 13 C 0.021 3.979 14 C 0.032 3.968 15 C -0.157 4.157 16 C 0.123 3.877 17 F -0.134 7.134 18 C -0.196 4.196 19 C 0.102 3.898 20 F -0.128 7.128 21 C 0.082 3.918 22 O -0.456 6.456 23 N -0.404 5.404 24 C 0.034 3.966 25 H 0.276 0.724 26 H 0.140 0.860 27 H 0.123 0.877 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.388 0.612 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -11.610 -0.750 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.051 6.051 10 C 0.053 3.947 11 C -0.232 4.232 12 C -0.109 4.109 13 C -0.112 4.112 14 C 0.030 3.970 15 C -0.177 4.177 16 C 0.104 3.896 17 F -0.112 7.112 18 C -0.216 4.216 19 C 0.082 3.918 20 F -0.107 7.107 21 C 0.034 3.966 22 O -0.265 6.265 23 N -0.113 5.113 24 C -0.132 4.132 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.245 0.755 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.702 -12.118 -0.090 14.919 hybrid contribution 1.042 1.406 -0.527 1.828 sum 9.743 -10.712 -0.616 14.493 Atomic orbital electron populations 1.70037 1.06158 1.28493 1.42938 1.25427 0.95958 0.99257 0.95758 0.85552 0.79197 0.79574 0.78628 1.18811 1.19769 1.19748 1.21532 0.92165 0.80480 1.52689 0.88486 1.83954 1.34601 1.11606 1.74893 1.20618 0.91043 0.89356 0.93693 1.21439 0.93856 0.99002 1.08929 1.21692 0.99837 0.92084 0.97297 1.18672 0.89689 0.90343 1.12464 1.18517 0.91243 0.91763 0.95479 1.21083 0.93320 0.97865 1.05386 1.16989 0.76913 0.93388 1.02358 1.91516 1.28483 1.97314 1.93925 1.20817 0.92701 0.98894 1.09217 1.17635 0.89464 0.81064 1.03679 1.91507 1.80762 1.45121 1.93281 1.18372 0.85061 0.89587 1.03577 1.84899 1.13006 1.95073 1.33517 1.67494 1.06565 1.29365 1.07910 1.21840 0.99873 0.85181 1.06307 0.91377 0.84271 0.85962 0.83567 0.83555 0.75473 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.77 13.67 55.48 0.76 -22.01 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 18.70 29.55 -169.99 -5.02 13.67 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.39 -9.97 9.50 30.88 0.29 -9.68 16 8 H 0.10 2.25 5.25 -52.49 -0.28 1.97 16 9 O -0.15 -3.93 9.76 0.20 0.00 -3.93 16 10 C 0.11 2.47 6.67 -38.88 -0.26 2.21 16 11 C -0.21 -4.06 9.25 -39.15 -0.36 -4.42 16 12 C -0.09 -1.51 9.45 -39.14 -0.37 -1.88 16 13 C 0.02 0.37 6.73 -82.93 -0.56 -0.18 16 14 C 0.03 0.48 5.89 -104.79 -0.62 -0.14 16 15 C -0.16 -2.01 9.39 -39.17 -0.37 -2.37 16 16 C 0.12 1.48 7.29 -39.48 -0.29 1.19 16 17 F -0.13 -1.58 17.26 2.25 0.04 -1.54 16 18 C -0.20 -2.27 9.99 -39.41 -0.39 -2.67 16 19 C 0.10 1.34 7.30 -39.35 -0.29 1.05 16 20 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 21 C 0.08 1.20 6.71 -38.82 -0.26 0.94 16 22 O -0.46 -6.87 11.19 -19.48 -0.22 -7.08 16 23 N -0.40 -7.66 8.12 -9.62 -0.08 -7.74 16 24 C 0.03 0.68 11.14 -17.36 -0.19 0.49 16 25 H 0.28 6.77 8.31 -40.82 -0.34 6.44 16 26 H 0.14 2.64 5.75 -52.49 -0.30 2.33 16 27 H 0.12 1.65 6.18 -52.48 -0.32 1.33 16 28 H 0.15 1.63 6.17 -52.49 -0.32 1.30 16 29 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 30 H 0.39 4.49 9.06 45.56 0.41 4.90 16 31 H 0.16 2.91 8.06 -52.48 -0.42 2.49 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -28.39 289.63 -4.67 -33.06 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -0.79 Total: 7.34 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -3.76 Total: -14.46 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.68 Total: -29.75 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.22 Total: -11.01 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.39 -4.67 -33.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243504595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.894 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds