Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86805 * 119.99641 * 2 1 4 4 H 1.48500 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46877 * 299.99849 * 3 2 1 6 6 H 1.48495 * 109.47098 * 59.99744 * 3 2 1 7 7 C 1.38641 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.35718 * 117.00078 * 185.05223 * 9 7 2 11 11 C 1.39444 * 120.38432 * 354.51468 * 10 9 7 12 12 C 1.38192 * 118.46272 * 179.69716 * 11 10 9 13 13 C 1.39473 * 119.14380 * 0.28349 * 12 11 10 14 14 C 1.48195 * 119.66047 * 179.97438 * 13 12 11 15 15 C 1.39448 * 120.13067 * 359.97438 * 14 13 12 16 16 C 1.38131 * 119.94275 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.89150 * 179.97438 * 16 15 14 18 18 C 1.38608 * 120.21409 * 359.97438 * 16 15 14 19 19 C 1.38334 * 120.27002 * 0.02562 * 18 16 15 20 20 F 1.35103 * 119.97084 * 180.02562 * 19 18 16 21 21 C 1.38777 * 120.05389 * 359.74386 * 19 18 16 22 22 O 1.35917 * 120.10502 * 180.25764 * 21 19 18 23 23 N 1.32722 * 120.68686 * 359.97267 * 13 12 11 24 24 C 1.31677 * 121.67454 * 0.02562 * 23 13 12 25 25 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.76471 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.42728 * 180.29666 * 12 11 10 28 28 H 1.08002 * 120.02951 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.86853 * 180.02562 * 18 16 15 30 30 H 0.96700 * 113.99927 * 270.25208 * 22 21 19 31 31 H 1.08006 * 119.59995 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3349 -2.3682 0.0005 10 6 2.0700 -3.5040 0.1076 11 6 3.4632 -3.4461 0.0968 12 6 4.1724 -4.6262 0.2146 13 6 3.4755 -5.8285 0.3336 14 6 4.2245 -7.1009 0.4601 15 6 5.6190 -7.0954 0.4595 16 6 6.3133 -8.2836 0.5782 17 9 7.6643 -8.2771 0.5770 18 6 5.6283 -9.4827 0.6985 19 6 4.2451 -9.4984 0.7001 20 9 3.5836 -10.6705 0.8182 21 6 3.5364 -8.3107 0.5864 22 8 2.1773 -8.3245 0.5931 23 7 2.1484 -5.8449 0.3348 24 6 1.4432 -4.7384 0.2243 25 1 -0.4850 0.8400 0.0004 26 1 3.9761 -2.5002 0.0030 27 1 5.2524 -4.6177 0.2148 28 1 6.1557 -6.1628 0.3664 29 1 6.1768 -10.4084 0.7914 30 1 1.7806 -8.4186 -0.2838 31 1 0.3644 -4.7905 0.2296 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243504595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = -110.175823 kcal Electronic energy + Delta-G solvation = -21899.271022 eV Core-core repulsion = 17975.439201 eV Total energy + Delta-G solvation = -3923.831821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.065 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.04046 -50.00213 -41.56308 -40.35303 -38.77951 -37.49702 -34.49394 -33.43991 -32.78047 -30.53896 -29.72188 -27.53803 -25.06731 -24.82486 -23.28132 -22.72563 -20.14205 -19.62580 -19.23528 -18.86689 -18.29113 -17.25692 -17.16436 -16.80944 -16.67344 -16.40929 -16.26560 -16.03594 -15.88049 -15.42190 -15.30424 -14.83853 -14.46535 -14.26068 -14.06024 -13.73115 -13.60913 -13.05084 -12.94765 -12.85497 -12.61628 -12.10883 -11.79610 -11.58602 -11.01669 -10.66060 -10.37601 -10.33095 -9.63298 -8.92866 -8.55540 -6.22449 -0.56329 -0.17197 0.36476 0.67931 1.37201 1.44871 1.55194 2.12136 2.16280 2.63047 2.84070 3.00120 3.13457 3.15671 3.35542 3.38650 3.68416 3.89106 3.94832 4.02793 4.19713 4.30467 4.52713 4.60216 4.77353 4.81577 4.91876 4.95169 5.09906 5.25854 5.41425 5.57302 5.74199 5.89359 6.77562 6.87244 7.05102 7.59192 8.65641 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003468 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.505049 B = 8071.187983 C = 9037.486456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.020 2.980 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.417 4.417 8 H 0.111 0.889 9 O -0.206 6.206 10 C 0.085 3.915 11 C -0.201 4.201 12 C -0.087 4.087 13 C 0.044 3.956 14 C 0.001 3.999 15 C -0.137 4.137 16 C 0.125 3.875 17 F -0.128 7.128 18 C -0.169 4.169 19 C 0.094 3.906 20 F -0.130 7.130 21 C 0.080 3.920 22 O -0.474 6.474 23 N -0.412 5.412 24 C 0.024 3.976 25 H 0.276 0.724 26 H 0.146 0.854 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.401 0.599 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -13.602 -0.582 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.493 4.493 8 H 0.128 0.872 9 O -0.109 6.109 10 C 0.030 3.970 11 C -0.227 4.227 12 C -0.106 4.106 13 C -0.091 4.091 14 C -0.001 4.001 15 C -0.157 4.157 16 C 0.105 3.895 17 F -0.106 7.106 18 C -0.189 4.189 19 C 0.074 3.926 20 F -0.109 7.109 21 C 0.032 3.968 22 O -0.286 6.286 23 N -0.121 5.121 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.193 0.807 30 H 0.260 0.740 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.539 -14.170 0.072 18.922 hybrid contribution 0.144 1.384 -0.537 1.491 sum 12.683 -12.787 -0.465 18.016 Atomic orbital electron populations 1.70173 1.08130 1.29281 1.46921 1.26631 0.96809 1.02842 0.95223 0.84507 0.78523 0.74569 0.78531 1.16953 1.19401 1.19518 1.21981 0.92918 0.80929 1.53482 0.87200 1.83953 1.35791 1.12460 1.78742 1.21033 0.92421 0.89115 0.94468 1.21679 0.92970 1.00457 1.07610 1.22090 1.02009 0.90534 0.96015 1.19320 0.89426 0.92047 1.08311 1.18414 0.92137 0.90557 0.98960 1.21257 0.92224 0.99245 1.02954 1.16914 0.77153 0.93173 1.02254 1.91549 1.27957 1.97257 1.93834 1.21123 0.91984 1.00058 1.05712 1.17615 0.90000 0.80546 1.04461 1.91511 1.80950 1.45024 1.93373 1.18582 0.84945 0.90243 1.03040 1.84850 1.13660 1.95198 1.34866 1.67602 1.07541 1.28518 1.08429 1.21946 1.00333 0.85205 1.06409 0.91429 0.83678 0.81471 0.81444 0.80721 0.73989 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.25 13.67 21.61 0.30 -51.96 16 2 C -0.02 -0.81 5.49 84.83 0.47 -0.34 16 3 Si 1.02 39.31 29.55 68.60 2.03 41.34 16 4 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.42 -22.16 9.50 67.92 0.64 -21.51 16 8 H 0.11 5.20 5.25 -2.91 -0.02 5.19 16 9 O -0.21 -11.37 9.76 -22.21 -0.22 -11.59 16 10 C 0.08 3.87 6.67 22.73 0.15 4.02 16 11 C -0.20 -7.74 9.25 22.55 0.21 -7.53 16 12 C -0.09 -2.71 9.45 22.56 0.21 -2.50 16 13 C 0.04 1.46 6.73 41.96 0.28 1.74 16 14 C 0.00 0.03 5.89 -19.97 -0.12 -0.09 16 15 C -0.14 -2.85 9.39 22.54 0.21 -2.64 16 16 C 0.12 2.37 7.29 22.33 0.16 2.53 16 17 F -0.13 -2.36 17.26 44.97 0.78 -1.58 16 18 C -0.17 -3.10 9.99 22.38 0.22 -2.88 16 19 C 0.09 2.14 7.30 22.42 0.16 2.31 16 20 F -0.13 -3.11 17.11 44.97 0.77 -2.34 16 21 C 0.08 2.13 6.71 22.77 0.15 2.28 16 22 O -0.47 -13.62 11.19 -92.62 -1.04 -14.66 16 23 N -0.41 -15.39 8.12 -184.36 -1.50 -16.89 16 24 C 0.02 0.98 11.14 84.88 0.95 1.92 16 25 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.15 5.37 5.75 -2.91 -0.02 5.35 16 27 H 0.17 3.65 6.18 -2.91 -0.02 3.63 16 28 H 0.17 2.74 6.17 -2.91 -0.02 2.72 16 29 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.40 8.88 9.06 -74.06 -0.67 8.21 16 31 H 0.16 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -65.12 289.63 5.39 -59.73 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.56 Total: 20.63 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.71 Total: -22.69 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -1.20 Total: -68.84 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.25 Total: -26.25 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 1.55 Total: -3.92 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -65.12 5.39 -59.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243504595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.449 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds