Wall clock time and date at job start Tue Mar 31 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47074 * 299.99861 * 3 2 1 6 6 H 1.48496 * 109.47247 * 59.99542 * 3 2 1 7 7 C 1.40061 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.40927 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.40912 * 119.67514 * 179.97438 * 9 7 2 11 11 C 1.36627 * 119.26285 * 180.02562 * 10 9 7 12 12 C 1.40338 * 118.60355 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.35093 * 179.97438 * 12 11 10 14 14 C 1.39745 * 120.07722 * 180.02562 * 13 12 11 15 15 C 1.37927 * 119.90742 * 179.97438 * 14 13 12 16 16 F 1.35109 * 119.96766 * 179.97438 * 15 14 13 17 17 C 1.39164 * 120.06323 * 359.97438 * 15 14 13 18 18 O 1.35865 * 119.92350 * 180.02562 * 17 15 14 19 19 C 1.38987 * 120.15112 * 0.29056 * 17 15 14 20 20 Cl 1.73605 * 119.95013 * 179.70525 * 19 17 15 21 21 C 1.37909 * 120.09303 * 359.45576 * 19 17 15 22 22 C 1.40165 * 119.29877 * 0.25296 * 12 11 10 23 23 N 1.31170 * 120.67705 * 359.46893 * 22 12 11 24 24 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.37044 * 0.04491 * 10 9 7 26 26 H 1.08003 * 120.69720 * 179.97438 * 11 10 9 27 27 H 1.07999 * 120.04965 * 359.95590 * 14 13 12 28 28 H 0.96700 * 114.00317 * 89.99762 * 18 17 15 29 29 H 1.08001 * 120.03284 * 180.28935 * 21 19 17 30 30 H 1.08001 * 119.65905 * 179.72069 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0077 -1.2129 0.0005 8 1 3.0877 -1.2130 0.0010 9 6 1.3031 -2.4334 0.0005 10 6 2.0146 -3.6497 0.0005 11 6 1.3230 -4.8280 0.0000 12 6 -0.0797 -4.7837 -0.0011 13 6 -0.8666 -6.0354 -0.0023 14 6 -2.2632 -5.9846 -0.0039 15 6 -2.9938 -7.1545 -0.0055 16 9 -4.3441 -7.1068 -0.0065 17 6 -2.3416 -8.3838 -0.0061 18 8 -3.0642 -9.5344 -0.0082 19 6 -0.9528 -8.4372 0.0011 20 17 -0.1446 -9.9737 0.0081 21 6 -0.2159 -7.2715 -0.0025 22 6 -0.7267 -3.5404 -0.0070 23 7 -0.0349 -2.4260 -0.0010 24 1 -0.4851 0.8401 -0.0004 25 1 3.0945 -3.6506 0.0013 26 1 1.8448 -5.7736 -0.0004 27 1 -2.7697 -5.0308 -0.0035 28 1 -3.2724 -9.8665 -0.8922 29 1 0.8632 -7.3142 -0.0017 30 1 -1.8060 -3.4995 -0.0124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244500176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:15 Heat of formation + Delta-G solvation = -42.918081 kcal Electronic energy + Delta-G solvation = -19601.521274 eV Core-core repulsion = 16108.942343 eV Total energy + Delta-G solvation = -3492.578931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.73150 -39.50480 -38.35058 -36.61611 -36.32788 -33.99870 -31.48477 -31.03702 -30.07384 -28.50490 -25.69747 -23.34261 -22.78261 -21.36676 -20.71134 -18.58190 -17.83854 -17.07619 -16.66431 -15.96079 -15.73110 -15.19228 -14.79842 -14.54991 -14.18188 -13.90073 -13.63972 -13.02361 -12.91389 -12.59826 -12.45683 -12.23357 -11.85303 -11.53586 -11.21733 -11.12202 -11.10390 -10.96479 -10.69066 -10.45178 -10.22360 -9.75231 -8.93406 -8.58466 -8.44671 -7.87853 -7.42712 -6.77203 -4.83000 0.99216 1.24925 2.13185 2.46910 2.86042 2.90269 2.93188 2.94847 3.67354 3.76925 4.08525 4.47821 4.51905 5.10047 5.14782 5.38642 5.62563 5.64706 5.77618 5.84268 6.04469 6.18744 6.27645 6.36579 6.48791 6.71496 6.74639 6.85293 7.08278 7.31123 7.47414 7.62228 7.70403 7.86397 8.25551 8.55204 9.76131 9.91775 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003552 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.278169 B = 7880.826552 C = 8799.646554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.059 3.941 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.092 0.908 9 C 0.248 3.752 10 C -0.268 4.268 11 C -0.030 4.030 12 C -0.290 4.290 13 C 0.076 3.924 14 C -0.173 4.173 15 C 0.106 3.894 16 F -0.134 7.134 17 C 0.021 3.979 18 O -0.479 6.479 19 C -0.014 4.014 20 Cl -0.064 7.064 21 C -0.144 4.144 22 C 0.169 3.831 23 N -0.488 5.488 24 H 0.280 0.720 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.381 0.619 29 H 0.138 0.862 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.524 -8.869 -1.643 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.419 4.419 8 H 0.110 0.890 9 C 0.126 3.874 10 C -0.290 4.290 11 C -0.052 4.052 12 C -0.296 4.296 13 C 0.074 3.926 14 C -0.192 4.192 15 C 0.086 3.914 16 F -0.113 7.113 17 C -0.025 4.025 18 O -0.287 6.287 19 C -0.041 4.041 20 Cl -0.035 7.035 21 C -0.163 4.163 22 C -0.003 4.003 23 N -0.199 5.199 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.236 0.764 29 H 0.156 0.844 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.992 -7.914 -1.022 8.225 hybrid contribution 0.532 -0.426 -0.511 0.852 sum -1.460 -8.340 -1.533 8.605 Atomic orbital electron populations 1.70121 1.07491 1.28773 1.24455 1.26264 0.95110 1.01811 0.93785 0.86132 0.80844 0.80233 0.79011 1.18032 1.19404 1.19394 1.19961 0.94974 0.89601 1.37392 0.88985 1.18716 0.88621 0.92044 0.87996 1.21448 0.99092 0.93414 1.15066 1.20657 0.92807 0.96972 0.94784 1.18854 0.93142 0.91665 1.25892 1.18569 0.91156 0.92522 0.90360 1.21179 0.94030 0.97185 1.06853 1.17689 0.76951 0.93246 1.03551 1.91479 1.28648 1.97224 1.93903 1.17820 0.88115 0.85092 1.11519 1.84900 1.73142 1.37700 1.32961 1.20908 0.90928 0.87396 1.04867 1.98347 1.78988 1.29272 1.96852 1.21031 1.00569 0.89537 1.05192 1.22814 0.98772 0.87732 0.90964 1.68827 1.07055 1.26222 1.17820 0.90835 0.87801 0.88018 0.83914 0.76446 0.84397 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.64 11.44 55.55 0.64 -16.00 16 2 C 0.06 1.35 5.50 -17.34 -0.10 1.25 16 3 Si 0.91 16.60 29.56 -169.99 -5.02 11.58 16 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.39 -9.39 9.11 -37.88 -0.35 -9.73 16 8 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.25 6.17 6.55 -84.98 -0.56 5.61 16 10 C -0.27 -5.93 9.76 -39.15 -0.38 -6.31 16 11 C -0.03 -0.60 9.46 -39.37 -0.37 -0.97 16 12 C -0.29 -5.91 5.92 -104.45 -0.62 -6.53 16 13 C 0.08 1.34 5.88 -104.86 -0.62 0.72 16 14 C -0.17 -2.88 9.41 -39.13 -0.37 -3.24 16 15 C 0.11 1.69 7.30 -39.35 -0.29 1.41 16 16 F -0.13 -2.14 17.10 2.25 0.04 -2.10 16 17 C 0.02 0.33 6.71 -38.96 -0.26 0.06 16 18 O -0.48 -6.53 12.80 -19.32 -0.25 -6.77 16 19 C -0.01 -0.21 6.32 -39.42 -0.25 -0.46 16 20 Cl -0.06 -0.85 28.49 -51.86 -1.48 -2.33 16 21 C -0.14 -2.32 9.21 -39.16 -0.36 -2.68 16 22 C 0.17 3.73 10.60 -17.11 -0.18 3.55 16 23 N -0.49 -12.32 7.83 -10.83 -0.08 -12.41 16 24 H 0.28 6.04 8.29 -40.82 -0.34 5.70 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.10 1.75 6.29 -52.48 -0.33 1.42 16 27 H 0.14 2.24 6.21 -52.49 -0.33 1.91 16 28 H 0.38 3.47 9.06 45.56 0.41 3.88 16 29 H 0.14 2.07 6.24 -52.49 -0.33 1.74 16 30 H 0.13 2.45 6.21 -52.49 -0.33 2.12 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -26.60 288.49 -7.37 -33.97 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -0.86 Total: 7.03 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -4.69 Total: -17.32 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.55 Total: -28.41 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.25 Total: -6.77 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.02 Total: 11.58 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.60 -7.37 -33.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244500176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.946 kcal (2) G-P(sol) polarization free energy of solvation -26.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds