Wall clock time and date at job start Tue Mar 31 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86802 * 119.99856 * 2 1 4 4 H 1.48498 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47074 * 299.99861 * 3 2 1 6 6 H 1.48496 * 109.47247 * 59.99542 * 3 2 1 7 7 C 1.40061 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.40927 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.40912 * 119.67514 * 179.97438 * 9 7 2 11 11 C 1.36627 * 119.26285 * 180.02562 * 10 9 7 12 12 C 1.40338 * 118.60355 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.35093 * 179.97438 * 12 11 10 14 14 C 1.39745 * 120.07722 * 180.02562 * 13 12 11 15 15 C 1.37927 * 119.90742 * 179.97438 * 14 13 12 16 16 F 1.35109 * 119.96766 * 179.97438 * 15 14 13 17 17 C 1.39164 * 120.06323 * 359.97438 * 15 14 13 18 18 O 1.35865 * 119.92350 * 180.02562 * 17 15 14 19 19 C 1.38987 * 120.15112 * 0.29056 * 17 15 14 20 20 Cl 1.73605 * 119.95013 * 179.70525 * 19 17 15 21 21 C 1.37909 * 120.09303 * 359.45576 * 19 17 15 22 22 C 1.40165 * 119.29877 * 0.25296 * 12 11 10 23 23 N 1.31170 * 120.67705 * 359.46893 * 22 12 11 24 24 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.37044 * 0.04491 * 10 9 7 26 26 H 1.08003 * 120.69720 * 179.97438 * 11 10 9 27 27 H 1.07999 * 120.04965 * 359.95590 * 14 13 12 28 28 H 0.96700 * 114.00317 * 89.99762 * 18 17 15 29 29 H 1.08001 * 120.03284 * 180.28935 * 21 19 17 30 30 H 1.08001 * 119.65905 * 179.72069 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 -0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0077 -1.2129 0.0005 8 1 3.0877 -1.2130 0.0010 9 6 1.3031 -2.4334 0.0005 10 6 2.0146 -3.6497 0.0005 11 6 1.3230 -4.8280 0.0000 12 6 -0.0797 -4.7837 -0.0011 13 6 -0.8666 -6.0354 -0.0023 14 6 -2.2632 -5.9846 -0.0039 15 6 -2.9938 -7.1545 -0.0055 16 9 -4.3441 -7.1068 -0.0065 17 6 -2.3416 -8.3838 -0.0061 18 8 -3.0642 -9.5344 -0.0082 19 6 -0.9528 -8.4372 0.0011 20 17 -0.1446 -9.9737 0.0081 21 6 -0.2159 -7.2715 -0.0025 22 6 -0.7267 -3.5404 -0.0070 23 7 -0.0349 -2.4260 -0.0010 24 1 -0.4851 0.8401 -0.0004 25 1 3.0945 -3.6506 0.0013 26 1 1.8448 -5.7736 -0.0004 27 1 -2.7697 -5.0308 -0.0035 28 1 -3.2724 -9.8665 -0.8922 29 1 0.8632 -7.3142 -0.0017 30 1 -1.8060 -3.4995 -0.0124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244500176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:14 Heat of formation + Delta-G solvation = -57.741196 kcal Electronic energy + Delta-G solvation = -19602.164053 eV Core-core repulsion = 16108.942343 eV Total energy + Delta-G solvation = -3493.221709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.00209 -40.88368 -39.87682 -37.86982 -37.51270 -35.61949 -33.06034 -32.60557 -31.45707 -30.00491 -27.28250 -24.77875 -24.26144 -22.89359 -22.22729 -19.81424 -19.45762 -18.41435 -18.04060 -17.40578 -17.10998 -16.55311 -16.19885 -15.89963 -15.76143 -15.29510 -14.97859 -14.47410 -14.42978 -14.07401 -13.90329 -13.61365 -13.19618 -12.97314 -12.75191 -12.70700 -12.42994 -12.25565 -12.10053 -11.77945 -11.65991 -11.31404 -10.46073 -10.08072 -9.83241 -9.58131 -8.98243 -8.41899 -6.56373 -0.35272 -0.04194 0.89126 0.95537 1.19001 1.41464 1.51248 1.57132 2.18067 2.37436 2.84398 2.87832 3.27293 3.72023 3.84658 3.89271 4.03186 4.20830 4.33684 4.34599 4.73802 4.75721 4.83778 4.87178 4.96554 5.09577 5.22801 5.42170 5.55243 5.69775 5.86447 6.03912 6.17485 6.58965 6.63269 6.83818 8.07674 8.30102 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003552 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.278169 B = 7880.826552 C = 8799.646554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.435 4.435 8 H 0.099 0.901 9 C 0.218 3.782 10 C -0.284 4.284 11 C -0.030 4.030 12 C -0.277 4.277 13 C 0.053 3.947 14 C -0.166 4.166 15 C 0.094 3.906 16 F -0.134 7.134 17 C 0.046 3.954 18 O -0.483 6.483 19 C -0.021 4.021 20 Cl -0.042 7.042 21 C -0.130 4.130 22 C 0.143 3.857 23 N -0.523 5.523 24 H 0.285 0.715 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.406 0.594 29 H 0.152 0.848 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 -11.074 -1.754 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.204 4.204 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.464 4.464 8 H 0.117 0.883 9 C 0.096 3.904 10 C -0.307 4.307 11 C -0.053 4.053 12 C -0.282 4.282 13 C 0.051 3.949 14 C -0.185 4.185 15 C 0.074 3.926 16 F -0.112 7.112 17 C -0.001 4.001 18 O -0.295 6.295 19 C -0.049 4.049 20 Cl -0.012 7.012 21 C -0.149 4.149 22 C -0.025 4.025 23 N -0.236 5.236 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.163 0.837 28 H 0.265 0.735 29 H 0.169 0.831 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.888 -10.177 -1.150 10.414 hybrid contribution 0.289 -0.240 -0.487 0.615 sum -1.598 -10.417 -1.637 10.665 Atomic orbital electron populations 1.70208 1.09115 1.29823 1.26613 1.27132 0.95772 1.04943 0.92590 0.85016 0.79543 0.75477 0.78914 1.17324 1.19026 1.19065 1.20256 0.95491 0.90442 1.40227 0.88311 1.19161 0.88981 0.93543 0.88738 1.21638 0.99923 0.93366 1.15727 1.21016 0.92886 0.97790 0.93632 1.19076 0.93638 0.92174 1.23361 1.18427 0.91398 0.92090 0.92963 1.21248 0.93846 0.97807 1.05581 1.17699 0.77038 0.93371 1.04452 1.91484 1.28538 1.97224 1.93977 1.17898 0.88321 0.85348 1.08491 1.84832 1.72777 1.36782 1.35147 1.20909 0.90979 0.88185 1.04816 1.98362 1.78556 1.27608 1.96721 1.21147 1.01300 0.89095 1.03322 1.23147 0.99560 0.88129 0.91705 1.68763 1.07755 1.27869 1.19175 0.90437 0.86444 0.84615 0.83678 0.73512 0.83085 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.31 11.44 21.84 0.25 -37.06 16 2 C 0.02 0.93 5.50 85.30 0.47 1.40 16 3 Si 0.99 34.97 29.56 68.60 2.03 37.00 16 4 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.27 -9.11 7.11 99.48 0.71 -8.41 16 7 C -0.43 -21.81 9.11 23.37 0.21 -21.60 16 8 H 0.10 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.22 11.29 6.55 40.16 0.26 11.56 16 10 C -0.28 -12.74 9.76 22.55 0.22 -12.52 16 11 C -0.03 -1.21 9.46 22.40 0.21 -0.99 16 12 C -0.28 -11.15 5.92 -19.76 -0.12 -11.27 16 13 C 0.05 1.78 5.88 -20.02 -0.12 1.66 16 14 C -0.17 -5.24 9.41 22.56 0.21 -5.03 16 15 C 0.09 2.79 7.30 22.42 0.16 2.96 16 16 F -0.13 -3.96 17.10 44.97 0.77 -3.19 16 17 C 0.05 1.27 6.71 22.67 0.15 1.42 16 18 O -0.48 -11.28 12.80 -92.03 -1.18 -12.46 16 19 C -0.02 -0.58 6.32 22.37 0.14 -0.43 16 20 Cl -0.04 -0.96 28.49 -2.72 -0.08 -1.04 16 21 C -0.13 -3.77 9.21 22.54 0.21 -3.57 16 22 C 0.14 6.49 10.60 85.26 0.90 7.40 16 23 N -0.52 -27.57 7.83 -188.18 -1.47 -29.04 16 24 H 0.28 12.89 8.29 -92.71 -0.77 12.12 16 25 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 26 H 0.14 4.31 6.29 -2.91 -0.02 4.30 16 27 H 0.15 4.46 6.21 -2.91 -0.02 4.44 16 28 H 0.41 5.65 9.06 -74.06 -0.67 4.98 16 29 H 0.15 3.97 6.24 -2.91 -0.02 3.95 16 30 H 0.14 5.58 6.21 -2.91 -0.02 5.56 16 Total: -1.00 -58.51 288.49 3.80 -54.70 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.56 Total: 20.12 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 2.92 Total: -29.03 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -1.22 Total: -66.10 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.18 Total: -12.46 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.77 Total: -3.19 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -58.51 3.80 -54.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244500176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -58.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds